RNA–Protein interactions for RNA: ENST00000397397.6

TSPAN4-203, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN4, Length 1,423 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-203ENST00000397397 NEXMIFQ5QGS0 1516 aa34.05■■■■□ 3.04
TSPAN4-203ENST00000397397 SLIT1O75093 1534 aa34.04■■■■□ 3.04
TSPAN4-203ENST00000397397 PPLO60437 1756 aa34.04■■■■□ 3.04
TSPAN4-203ENST00000397397 IFT172Q9UG01 1749 aa34.04■■■■□ 3.04
TSPAN4-203ENST00000397397 ARHGAP23Q9P227 1491 aa34.03■■■■□ 3.04
TSPAN4-203ENST00000397397 DCAF11Q8TEB1 546 aa34.03■■■■□ 3.04
TSPAN4-203ENST00000397397 ZFYVE9O95405 1425 aa34.02■■■■□ 3.04
TSPAN4-203ENST00000397397 HDGFP51858 240 aaKnown RBP34.01■■■■□ 3.03
TSPAN4-203ENST00000397397 NUTM2DQ5VT03 806 aaPredicted RBP34.01■■■■□ 3.03
TSPAN4-203ENST00000397397 TIMELESSQ9UNS1 1208 aa34■■■■□ 3.03
TSPAN4-203ENST00000397397 KDM2AQ9Y2K7 1162 aa34■■■■□ 3.03
TSPAN4-203ENST00000397397 NCKAP5LQ9HCH0 1330 aa34■■■■□ 3.03
TSPAN4-203ENST00000397397 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.99■■■■□ 3.03
TSPAN4-203ENST00000397397 DMRT2Q9Y5R5 561 aa33.99■■■■□ 3.03
TSPAN4-203ENST00000397397 EID1Q9Y6B2 187 aa33.98■■■■□ 3.03
TSPAN4-203ENST00000397397 TXNDC2Q86VQ3 553 aa33.97■■■■□ 3.03
TSPAN4-203ENST00000397397 PPP1R15AO75807 674 aaPredicted RBP33.96■■■■□ 3.03
TSPAN4-203ENST00000397397 VGFO15240 615 aaPredicted RBP33.95■■■■□ 3.02
TSPAN4-203ENST00000397397 LTKP29376 864 aa33.95■■■■□ 3.02
TSPAN4-203ENST00000397397 ANKLE2Q86XL3 938 aa33.95■■■■□ 3.02
TSPAN4-203ENST00000397397 MYOM2P54296 1465 aa33.93■■■■□ 3.02
TSPAN4-203ENST00000397397 SCAF11Q99590 1463 aaKnown RBP33.93■■■■□ 3.02
TSPAN4-203ENST00000397397 STAC3Q96MF2 364 aa33.93■■■■□ 3.02
TSPAN4-203ENST00000397397 ADGRF5Q8IZF2 1346 aa33.91■■■■□ 3.02
TSPAN4-203ENST00000397397 POLR1AO95602 1720 aaPredicted RBP33.9■■■■□ 3.02
TSPAN4-203ENST00000397397 SENP3Q9H4L4 574 aaPredicted RBP33.87■■■■□ 3.01
TSPAN4-203ENST00000397397 NRXN1Q9ULB1 1477 aa33.84■■■■□ 3.01
TSPAN4-203ENST00000397397 PLEKHG1Q9ULL1 1385 aa33.83■■■■□ 3.01
TSPAN4-203ENST00000397397 BCANQ96GW7 911 aa33.83■■■■□ 3.01
TSPAN4-203ENST00000397397 PRAG1Q86YV5 1406 aa33.82■■■■□ 3
TSPAN4-203ENST00000397397 ILDR1Q86SU0 546 aaPredicted RBP33.81■■■■□ 3
TSPAN4-203ENST00000397397 PIK3C2GO75747 1445 aa33.8■■■■□ 3
TSPAN4-203ENST00000397397 ZEB1P37275 1124 aaPredicted RBP33.79■■■■□ 3
TSPAN4-203ENST00000397397 NPHP4O75161 1426 aaPredicted RBP33.78■■■■□ 3
TSPAN4-203ENST00000397397 MED14O60244 1454 aa33.78■■■■□ 3
TSPAN4-203ENST00000397397 IQGAP1P46940 1657 aa33.77■■■■□ 3
TSPAN4-203ENST00000397397 NBPF8Q3BBV2 869 aa33.77■■■■□ 3
TSPAN4-203ENST00000397397 SETBP1Q9Y6X0 1596 aa33.77■■■■□ 3
TSPAN4-203ENST00000397397 NRXN3Q9Y4C0 1643 aa33.76■■■■□ 3
TSPAN4-203ENST00000397397 CERKQ8TCT0 537 aa33.76■■■□□ 2.99
TSPAN4-203ENST00000397397 LTBP4Q8N2S1 1624 aa33.73■■■□□ 2.99
TSPAN4-203ENST00000397397 ALKQ9UM73 1620 aa33.71■■■□□ 2.99
TSPAN4-203ENST00000397397 CFAP70Q5T0N1 1121 aa33.7■■■□□ 2.99
TSPAN4-203ENST00000397397 C14orf93Q9H972 538 aaKnown RBP33.7■■■□□ 2.99
TSPAN4-203ENST00000397397 ADAMTS13Q76LX8 1427 aa33.7■■■□□ 2.99
TSPAN4-203ENST00000397397 LAMC1P11047 1609 aa33.7■■■□□ 2.98
TSPAN4-203ENST00000397397 SLC26A8Q96RN1 970 aa33.7■■■□□ 2.98
TSPAN4-203ENST00000397397 ZNF335Q9H4Z2 1342 aaPredicted RBP33.69■■■□□ 2.98
TSPAN4-203ENST00000397397 KIAA1210Q9ULL0 1709 aa33.69■■■□□ 2.98
TSPAN4-203ENST00000397397 TRPM1Q7Z4N2 1603 aa33.68■■■□□ 2.98
TSPAN4-203ENST00000397397 DIP2AQ14689 1571 aa33.66■■■□□ 2.98
TSPAN4-203ENST00000397397 SETD1AO15047 1707 aaKnown RBP33.65■■■□□ 2.98
TSPAN4-203ENST00000397397 FBXO41Q8TF61 875 aa33.65■■■□□ 2.98
TSPAN4-203ENST00000397397 TBX22Q9Y458 520 aa33.64■■■□□ 2.98
TSPAN4-203ENST00000397397 RALGAPBQ86X10 1494 aa33.62■■■□□ 2.97
TSPAN4-203ENST00000397397 NBPF1Q3BBV0 1214 aa33.62■■■□□ 2.97
TSPAN4-203ENST00000397397 TMEM132EQ6IEE7 984 aa33.59■■■□□ 2.97
TSPAN4-203ENST00000397397 ROCK2O75116 1388 aaKnown RBP33.58■■■□□ 2.97
TSPAN4-203ENST00000397397 METP08581 1390 aa33.58■■■□□ 2.97
TSPAN4-203ENST00000397397 ASXL1Q8IXJ9 1541 aa33.57■■■□□ 2.97
TSPAN4-203ENST00000397397 ADGRB1O14514 1584 aa33.55■■■□□ 2.96
TSPAN4-203ENST00000397397 GPRASP1Q5JY77 1395 aa33.51■■■□□ 2.95
TSPAN4-203ENST00000397397 PIK3R4Q99570 1358 aa33.51■■■□□ 2.95
TSPAN4-203ENST00000397397 CARD11Q9BXL7 1154 aa33.5■■■□□ 2.95
TSPAN4-203ENST00000397397 YTHDC2Q9H6S0 1430 aaKnown RBP33.49■■■□□ 2.95
TSPAN4-203ENST00000397397 STK26Q9P289 416 aa33.48■■■□□ 2.95
TSPAN4-203ENST00000397397 CHD2O14647 1828 aaKnown RBP33.48■■■□□ 2.95
TSPAN4-203ENST00000397397 PTPRUQ92729 1446 aa33.48■■■□□ 2.95
TSPAN4-203ENST00000397397 LRPPRCP42704 1394 aaKnown RBP33.46■■■□□ 2.95
TSPAN4-203ENST00000397397 AMOTL2Q9Y2J4 779 aa33.45■■■□□ 2.94
TSPAN4-203ENST00000397397 IQSEC2Q5JU85 1478 aa33.44■■■□□ 2.94
TSPAN4-203ENST00000397397 KCNA6P17658 529 aa33.43■■■□□ 2.94
TSPAN4-203ENST00000397397 TRAK1Q9UPV9 953 aa33.43■■■□□ 2.94
TSPAN4-203ENST00000397397 STRCP1A6NGW2 1772 aa33.42■■■□□ 2.94
TSPAN4-203ENST00000397397 XRN1Q8IZH2 1706 aaKnown RBP33.42■■■□□ 2.94
TSPAN4-203ENST00000397397 ABCC11Q96J66 1382 aa33.41■■■□□ 2.94
TSPAN4-203ENST00000397397 CPS1P31327 1500 aa33.41■■■□□ 2.94
TSPAN4-203ENST00000397397 KNDC1Q76NI1 1749 aa33.4■■■□□ 2.94
TSPAN4-203ENST00000397397 NWD1Q149M9 1564 aa33.4■■■□□ 2.94
TSPAN4-203ENST00000397397 TECPR2O15040 1411 aa33.36■■■□□ 2.93
TSPAN4-203ENST00000397397 ARHGEF28Q8N1W1 1705 aaKnown RBP33.35■■■□□ 2.93
TSPAN4-203ENST00000397397 DLC1Q96QB1 1528 aa33.35■■■□□ 2.93
TSPAN4-203ENST00000397397 USP47Q96K76 1375 aa33.34■■■□□ 2.93
TSPAN4-203ENST00000397397 EIF3AQ14152 1382 aaKnown RBP33.32■■■□□ 2.92
TSPAN4-203ENST00000397397 ROBO2Q9HCK4 1378 aa33.32■■■□□ 2.92
TSPAN4-203ENST00000397397 PTCH1Q13635 1447 aa33.31■■■□□ 2.92
TSPAN4-203ENST00000397397 NKTRP30414 1462 aaKnown RBP33.3■■■□□ 2.92
TSPAN4-203ENST00000397397 SIRT1Q96EB6 747 aa33.29■■■□□ 2.92
TSPAN4-203ENST00000397397 EIF4G2P78344 907 aaKnown RBP eCLIP33.28■■■□□ 2.92
TSPAN4-203ENST00000397397 PRAM1Q96QH2 718 aa33.28■■■□□ 2.92
TSPAN4-203ENST00000397397 POGKQ9P215 609 aa33.28■■■□□ 2.92
TSPAN4-203ENST00000397397 FAM135BQ49AJ0 1406 aa33.28■■■□□ 2.92
TSPAN4-203ENST00000397397 WAPLQ7Z5K2 1190 aa33.28■■■□□ 2.92
TSPAN4-203ENST00000397397 LRRC7Q96NW7 1537 aa33.27■■■□□ 2.92
TSPAN4-203ENST00000397397 PROSER2Q86WR7 435 aaPredicted RBP33.26■■■□□ 2.91
TSPAN4-203ENST00000397397 PLEKHH1Q9ULM0 1364 aa33.25■■■□□ 2.91
TSPAN4-203ENST00000397397 CENPJQ9HC77 1338 aaPredicted RBP33.24■■■□□ 2.91
TSPAN4-203ENST00000397397 HSPA5P11021 654 aaKnown RBP33.24■■■□□ 2.91
TSPAN4-203ENST00000397397 SAFB2Q14151 953 aaKnown RBP eCLIP33.24■■■□□ 2.91
TSPAN4-203ENST00000397397 ST20-MTHFSA0A0A6YYL1 179 aa33.23■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms