RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 KIF1BO60333 1816 aa32.11■■■□□ 2.73
CLN3-207ENST00000395653 LTBP4Q8N2S1 1624 aa32.11■■■□□ 2.73
CLN3-207ENST00000395653 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.09■■■□□ 2.73
CLN3-207ENST00000395653 ZNF335Q9H4Z2 1342 aaPredicted RBP32.09■■■□□ 2.73
CLN3-207ENST00000395653 CCDC144AA2RUR9 1427 aa32.09■■■□□ 2.73
CLN3-207ENST00000395653 PLEKHG1Q9ULL1 1385 aa32.05■■■□□ 2.72
CLN3-207ENST00000395653 PPP1R15AO75807 674 aaPredicted RBP32.05■■■□□ 2.72
CLN3-207ENST00000395653 ZNF326Q5BKZ1 582 aaKnown RBP32.03■■■□□ 2.72
CLN3-207ENST00000395653 CERKQ8TCT0 537 aa32.02■■■□□ 2.72
CLN3-207ENST00000395653 NEXMIFQ5QGS0 1516 aa31.99■■■□□ 2.71
CLN3-207ENST00000395653 CPS1P31327 1500 aa31.97■■■□□ 2.71
CLN3-207ENST00000395653 NUTM2DQ5VT03 806 aaPredicted RBP31.97■■■□□ 2.71
CLN3-207ENST00000395653 ANKRD30BQ9BXX2 1392 aa31.96■■■□□ 2.71
CLN3-207ENST00000395653 BCANQ96GW7 911 aa31.95■■■□□ 2.71
CLN3-207ENST00000395653 SPATA31E1Q6ZUB1 1445 aa31.95■■■□□ 2.71
CLN3-207ENST00000395653 RPGRIP1LQ68CZ1 1315 aa31.94■■■□□ 2.7
CLN3-207ENST00000395653 SLC26A8Q96RN1 970 aa31.94■■■□□ 2.7
CLN3-207ENST00000395653 IQSEC2Q5JU85 1478 aa31.93■■■□□ 2.7
CLN3-207ENST00000395653 DIP2AQ14689 1571 aa31.91■■■□□ 2.7
CLN3-207ENST00000395653 ADAMTS13Q76LX8 1427 aa31.9■■■□□ 2.7
CLN3-207ENST00000395653 SETBP1Q9Y6X0 1596 aa31.89■■■□□ 2.7
CLN3-207ENST00000395653 STRCP1A6NGW2 1772 aa31.89■■■□□ 2.7
CLN3-207ENST00000395653 TBX22Q9Y458 520 aa31.88■■■□□ 2.69
CLN3-207ENST00000395653 PPLO60437 1756 aa31.87■■■□□ 2.69
CLN3-207ENST00000395653 SENP3Q9H4L4 574 aaPredicted RBP31.87■■■□□ 2.69
CLN3-207ENST00000395653 VGFO15240 615 aaPredicted RBP31.86■■■□□ 2.69
CLN3-207ENST00000395653 NRXN3Q9Y4C0 1643 aa31.86■■■□□ 2.69
CLN3-207ENST00000395653 RGL3Q3MIN7 710 aa31.83■■■□□ 2.69
CLN3-207ENST00000395653 NWD1Q149M9 1564 aa31.83■■■□□ 2.69
CLN3-207ENST00000395653 KCNA6P17658 529 aa31.83■■■□□ 2.69
CLN3-207ENST00000395653 PIK3R4Q99570 1358 aa31.82■■■□□ 2.68
CLN3-207ENST00000395653 FBXO41Q8TF61 875 aa31.82■■■□□ 2.68
CLN3-207ENST00000395653 IFT172Q9UG01 1749 aa31.81■■■□□ 2.68
CLN3-207ENST00000395653 LRRC7Q96NW7 1537 aa31.8■■■□□ 2.68
CLN3-207ENST00000395653 NKTRP30414 1462 aaKnown RBP31.78■■■□□ 2.68
CLN3-207ENST00000395653 CHD2O14647 1828 aaKnown RBP31.78■■■□□ 2.68
CLN3-207ENST00000395653 DHX57Q6P158 1386 aaKnown RBP31.71■■■□□ 2.67
CLN3-207ENST00000395653 ADGRF5Q8IZF2 1346 aa31.71■■■□□ 2.67
CLN3-207ENST00000395653 ILDR1Q86SU0 546 aaPredicted RBP31.71■■■□□ 2.67
CLN3-207ENST00000395653 MYOM2P54296 1465 aa31.7■■■□□ 2.67
CLN3-207ENST00000395653 SETD1AO15047 1707 aaKnown RBP31.69■■■□□ 2.66
CLN3-207ENST00000395653 ALKQ9UM73 1620 aa31.69■■■□□ 2.66
CLN3-207ENST00000395653 PTPRUQ92729 1446 aa31.68■■■□□ 2.66
CLN3-207ENST00000395653 METP08581 1390 aa31.68■■■□□ 2.66
CLN3-207ENST00000395653 PIK3C2GO75747 1445 aa31.66■■■□□ 2.66
CLN3-207ENST00000395653 TMEM94Q12767 1356 aa31.66■■■□□ 2.66
CLN3-207ENST00000395653 NRXN1Q9ULB1 1477 aa31.66■■■□□ 2.66
CLN3-207ENST00000395653 PROSER2Q86WR7 435 aaPredicted RBP31.66■■■□□ 2.66
CLN3-207ENST00000395653 XIRP1Q702N8 1843 aaKnown RBP31.65■■■□□ 2.66
CLN3-207ENST00000395653 AMOTL2Q9Y2J4 779 aa31.65■■■□□ 2.66
CLN3-207ENST00000395653 XRN1Q8IZH2 1706 aaKnown RBP31.64■■■□□ 2.66
CLN3-207ENST00000395653 UBAP1LF5GYI3 381 aa31.61■■■□□ 2.65
CLN3-207ENST00000395653 STAC3Q96MF2 364 aa31.6■■■□□ 2.65
CLN3-207ENST00000395653 PCGF6Q9BYE7 350 aa31.58■■■□□ 2.65
CLN3-207ENST00000395653 NCOA3Q9Y6Q9 1424 aa31.58■■■□□ 2.65
CLN3-207ENST00000395653 TOM1O60784 492 aa31.57■■■□□ 2.64
CLN3-207ENST00000395653 DCAF11Q8TEB1 546 aa31.57■■■□□ 2.64
CLN3-207ENST00000395653 PRAG1Q86YV5 1406 aa31.55■■■□□ 2.64
CLN3-207ENST00000395653 LAMC1P11047 1609 aa31.55■■■□□ 2.64
CLN3-207ENST00000395653 RBM33Q96EV2 1170 aaKnown RBP31.55■■■□□ 2.64
CLN3-207ENST00000395653 C14orf93Q9H972 538 aaKnown RBP31.52■■■□□ 2.64
CLN3-207ENST00000395653 PTCH1Q13635 1447 aa31.52■■■□□ 2.64
CLN3-207ENST00000395653 ASXL1Q8IXJ9 1541 aa31.51■■■□□ 2.63
CLN3-207ENST00000395653 SIN3AQ96ST3 1273 aa31.5■■■□□ 2.63
CLN3-207ENST00000395653 KDM2AQ9Y2K7 1162 aa31.5■■■□□ 2.63
CLN3-207ENST00000395653 MSH6P52701 1360 aa31.5■■■□□ 2.63
CLN3-207ENST00000395653 CFAP70Q5T0N1 1121 aa31.47■■■□□ 2.63
CLN3-207ENST00000395653 LRPPRCP42704 1394 aaKnown RBP31.45■■■□□ 2.63
CLN3-207ENST00000395653 TECPR2O15040 1411 aa31.45■■■□□ 2.62
CLN3-207ENST00000395653 TMEM132EQ6IEE7 984 aa31.44■■■□□ 2.62
CLN3-207ENST00000395653 C14orf37Q86TY3 774 aa31.44■■■□□ 2.62
CLN3-207ENST00000395653 ROBO2Q9HCK4 1378 aa31.44■■■□□ 2.62
CLN3-207ENST00000395653 NEUROD1Q13562 356 aa31.42■■■□□ 2.62
CLN3-207ENST00000395653 YTHDC2Q9H6S0 1430 aaKnown RBP31.42■■■□□ 2.62
CLN3-207ENST00000395653 KNDC1Q76NI1 1749 aa31.42■■■□□ 2.62
CLN3-207ENST00000395653 ABCC11Q96J66 1382 aa31.42■■■□□ 2.62
CLN3-207ENST00000395653 C19orf44Q9H6X5 657 aa31.41■■■□□ 2.62
CLN3-207ENST00000395653 PIP4K2BP78356 416 aa31.41■■■□□ 2.62
CLN3-207ENST00000395653 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.39■■■□□ 2.62
CLN3-207ENST00000395653 SCAF1Q9H7N4 1312 aaKnown RBP31.39■■■□□ 2.62
CLN3-207ENST00000395653 L3MBTL2Q969R5 705 aa31.39■■■□□ 2.62
CLN3-207ENST00000395653 ADGRB1O14514 1584 aa31.38■■■□□ 2.61
CLN3-207ENST00000395653 DCCP43146 1447 aa31.38■■■□□ 2.61
CLN3-207ENST00000395653 ADGRL3Q9HAR2 1447 aa31.38■■■□□ 2.61
CLN3-207ENST00000395653 STK26Q9P289 416 aa31.37■■■□□ 2.61
CLN3-207ENST00000395653 NALCNQ8IZF0 1738 aa31.35■■■□□ 2.61
CLN3-207ENST00000395653 CADPS2Q86UW7 1296 aa31.35■■■□□ 2.61
CLN3-207ENST00000395653 KIAA1210Q9ULL0 1709 aa31.33■■■□□ 2.61
CLN3-207ENST00000395653 ATF3P18847 181 aa31.32■■■□□ 2.61
CLN3-207ENST00000395653 FAM135BQ49AJ0 1406 aa31.32■■■□□ 2.6
CLN3-207ENST00000395653 SIRT1Q96EB6 747 aa31.32■■■□□ 2.6
CLN3-207ENST00000395653 SLAIN2Q9P270 581 aa31.31■■■□□ 2.6
CLN3-207ENST00000395653 DLC1Q96QB1 1528 aa31.29■■■□□ 2.6
CLN3-207ENST00000395653 WAPLQ7Z5K2 1190 aa31.26■■■□□ 2.6
CLN3-207ENST00000395653 TONSLQ96HA7 1378 aa31.26■■■□□ 2.6
CLN3-207ENST00000395653 ROBO1Q9Y6N7 1651 aa31.25■■■□□ 2.59
CLN3-207ENST00000395653 PLEKHH1Q9ULM0 1364 aa31.25■■■□□ 2.59
CLN3-207ENST00000395653 CLSPNQ9HAW4 1339 aa31.24■■■□□ 2.59
CLN3-207ENST00000395653 MST1RQ04912 1400 aa31.22■■■□□ 2.59
CLN3-207ENST00000395653 CDC42BPGQ6DT37 1551 aa31.22■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms