RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 NUDCQ9Y266 331 aa13.63□□□□□ -0.23
COL6A3-205ENST00000392004 ZNF330Q9Y3S2 320 aaPredicted RBP13.63□□□□□ -0.23
COL6A3-205ENST00000392004 EVA1CP58658 441 aa13.62□□□□□ -0.23
COL6A3-205ENST00000392004 CDK19Q9BWU1 502 aa13.62□□□□□ -0.23
COL6A3-205ENST00000392004 MAPK8IP3Q9UPT6 1336 aa13.62□□□□□ -0.23
COL6A3-205ENST00000392004 CCDC146Q8IYE0 955 aa13.62□□□□□ -0.23
COL6A3-205ENST00000392004 ABTB2Q8N961 1025 aa13.62□□□□□ -0.23
COL6A3-205ENST00000392004 MAP3K1Q13233 1512 aa13.61□□□□□ -0.23
COL6A3-205ENST00000392004 UBAP1LF5GYI3 381 aa13.6□□□□□ -0.23
COL6A3-205ENST00000392004 STRN4Q9NRL3 753 aa13.6□□□□□ -0.23
COL6A3-205ENST00000392004 ZC3H6P61129 1189 aaKnown RBP13.59□□□□□ -0.23
COL6A3-205ENST00000392004 COG3Q96JB2 828 aa13.59□□□□□ -0.23
COL6A3-205ENST00000392004 RRP7AQ9Y3A4 280 aaKnown RBP13.59□□□□□ -0.23
COL6A3-205ENST00000392004 CLASP1Q7Z460 1538 aa13.59□□□□□ -0.23
COL6A3-205ENST00000392004 ADAMTS2O95450 1211 aa13.59□□□□□ -0.23
COL6A3-205ENST00000392004 NOS1P29475 1434 aa13.58□□□□□ -0.23
COL6A3-205ENST00000392004 ANKRD30BQ9BXX2 1392 aa13.58□□□□□ -0.24
COL6A3-205ENST00000392004 ZCCHC11Q5TAX3 1644 aaKnown RBP13.58□□□□□ -0.24
COL6A3-205ENST00000392004 UHRF1BP1LA0JNW5 1464 aa13.57□□□□□ -0.24
COL6A3-205ENST00000392004 PHF23Q9BUL5 403 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-205ENST00000392004 TTC37Q6PGP7 1564 aa13.57□□□□□ -0.24
COL6A3-205ENST00000392004 ATP10AO60312 1499 aa13.57□□□□□ -0.24
COL6A3-205ENST00000392004 KCNA6P17658 529 aa13.56□□□□□ -0.24
COL6A3-205ENST00000392004 SYTL4Q96C24 671 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-205ENST00000392004 FBLN1P23142 703 aa13.55□□□□□ -0.24
COL6A3-205ENST00000392004 CCER2I3L3R5 266 aa13.55□□□□□ -0.24
COL6A3-205ENST00000392004 LTKP29376 864 aa13.55□□□□□ -0.24
COL6A3-205ENST00000392004 KIF7Q2M1P5 1343 aa13.55□□□□□ -0.24
COL6A3-205ENST00000392004 ADCY10Q96PN6 1610 aa13.54□□□□□ -0.24
COL6A3-205ENST00000392004 NLRP2Q9NX02 1062 aa13.54□□□□□ -0.24
COL6A3-205ENST00000392004 KTN1Q86UP2 1357 aaKnown RBP13.53□□□□□ -0.24
COL6A3-205ENST00000392004 ARHGEF12Q9NZN5 1544 aa13.53□□□□□ -0.24
COL6A3-205ENST00000392004 HMOX1P09601 288 aa13.53□□□□□ -0.24
COL6A3-205ENST00000392004 NUDT16Q96DE0 195 aaKnown RBP13.53□□□□□ -0.24
COL6A3-205ENST00000392004 DDX17Q92841 729 aaKnown RBP13.52□□□□□ -0.25
COL6A3-205ENST00000392004 NEO1Q92859 1461 aa13.51□□□□□ -0.25
COL6A3-205ENST00000392004 MBD5Q9P267 1494 aa13.5□□□□□ -0.25
COL6A3-205ENST00000392004 ATP7AQ04656 1500 aa13.5□□□□□ -0.25
COL6A3-205ENST00000392004 C11orf95C9JLR9 678 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-205ENST00000392004 ELL2O00472 640 aaPredicted RBP13.5□□□□□ -0.25
COL6A3-205ENST00000392004 RRS1Q15050 365 aaKnown RBP13.5□□□□□ -0.25
COL6A3-205ENST00000392004 WASHC2AQ641Q2 1341 aa13.5□□□□□ -0.25
COL6A3-205ENST00000392004 CGNL1Q0VF96 1302 aa13.5□□□□□ -0.25
COL6A3-205ENST00000392004 NPHP1O15259 732 aa13.49□□□□□ -0.25
COL6A3-205ENST00000392004 FRAT1Q92837 279 aaPredicted RBP13.49□□□□□ -0.25
COL6A3-205ENST00000392004 RPGRIP1LQ68CZ1 1315 aa13.49□□□□□ -0.25
COL6A3-205ENST00000392004 RTEL1-TNFRSF6BF6WH68 1400 aa13.49□□□□□ -0.25
COL6A3-205ENST00000392004 CABLES1Q8TDN4 633 aa13.48□□□□□ -0.25
COL6A3-205ENST00000392004 RTF1Q92541 710 aaKnown RBP13.48□□□□□ -0.25
COL6A3-205ENST00000392004 DMRT2Q9Y5R5 561 aa13.48□□□□□ -0.25
COL6A3-205ENST00000392004 DUOX2Q9NRD8 1548 aa13.48□□□□□ -0.25
COL6A3-205ENST00000392004 ZBTB47Q9UFB7 747 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-205ENST00000392004 CCDC61Q9Y6R9 512 aa13.48□□□□□ -0.25
COL6A3-205ENST00000392004 PRDM11Q9NQV5 511 aa13.48□□□□□ -0.25
COL6A3-205ENST00000392004 GPRASP1Q5JY77 1395 aa13.47□□□□□ -0.25
COL6A3-205ENST00000392004 FAM135AQ9P2D6 1515 aa13.46□□□□□ -0.25
COL6A3-205ENST00000392004 ZFYVE16Q7Z3T8 1539 aa13.46□□□□□ -0.25
COL6A3-205ENST00000392004 ITSN2Q9NZM3 1697 aa13.46□□□□□ -0.26
COL6A3-205ENST00000392004 C14orf93Q9H972 538 aaKnown RBP13.46□□□□□ -0.26
COL6A3-205ENST00000392004 RIMS2Q9UQ26 1411 aa13.45□□□□□ -0.26
COL6A3-205ENST00000392004 MTHFSP49914 203 aa13.45□□□□□ -0.26
COL6A3-205ENST00000392004 CHRNA2Q15822 529 aa13.45□□□□□ -0.26
COL6A3-205ENST00000392004 STAC3Q96MF2 364 aa13.45□□□□□ -0.26
COL6A3-205ENST00000392004 PHF8Q9UPP1 1060 aa13.45□□□□□ -0.26
COL6A3-205ENST00000392004 NME9Q86XW9 330 aa13.44□□□□□ -0.26
COL6A3-205ENST00000392004 TCERG1O14776 1098 aaKnown RBP13.44□□□□□ -0.26
COL6A3-205ENST00000392004 COL17A1Q9UMD9 1497 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-205ENST00000392004 UHRF1BP1Q6BDS2 1440 aa13.43□□□□□ -0.26
COL6A3-205ENST00000392004 ORAI2Q96SN7 254 aa13.43□□□□□ -0.26
COL6A3-205ENST00000392004 FANCIQ9NVI1 1328 aa13.43□□□□□ -0.26
COL6A3-205ENST00000392004 SAMD9LQ8IVG5 1584 aa13.43□□□□□ -0.26
COL6A3-205ENST00000392004 CFAP43Q8NDM7 1665 aa13.43□□□□□ -0.26
COL6A3-205ENST00000392004 NECTIN2Q92692 538 aa13.43□□□□□ -0.26
COL6A3-205ENST00000392004 TCOF1Q13428 1488 aaKnown RBP13.43□□□□□ -0.26
COL6A3-205ENST00000392004 NGEFQ8N5V2 710 aa13.42□□□□□ -0.26
COL6A3-205ENST00000392004 WASLO00401 505 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-205ENST00000392004 KDM6BO15054 1643 aa13.42□□□□□ -0.26
COL6A3-205ENST00000392004 NPATQ14207 1427 aa13.42□□□□□ -0.26
COL6A3-205ENST00000392004 DDX54Q8TDD1 881 aaKnown RBP13.42□□□□□ -0.26
COL6A3-205ENST00000392004 ZNF428Q96B54 188 aa13.42□□□□□ -0.26
COL6A3-205ENST00000392004 PRKRIP1Q9H875 184 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-205ENST00000392004 NGLY1Q96IV0 654 aa13.41□□□□□ -0.26
COL6A3-205ENST00000392004 CCDC7Q96M83 1385 aa13.41□□□□□ -0.26
COL6A3-205ENST00000392004 TOM1L2Q6ZVM7 507 aa13.41□□□□□ -0.26
COL6A3-205ENST00000392004 NLRP13Q86W25 1043 aa13.41□□□□□ -0.26
COL6A3-205ENST00000392004 ZRANB1Q9UGI0 708 aa13.41□□□□□ -0.26
COL6A3-205ENST00000392004 ZNF335Q9H4Z2 1342 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-205ENST00000392004 MSH5O43196 834 aa13.4□□□□□ -0.26
COL6A3-205ENST00000392004 CADPS2Q86UW7 1296 aa13.4□□□□□ -0.26
COL6A3-205ENST00000392004 LMTK3Q96Q04 1460 aa13.4□□□□□ -0.26
COL6A3-205ENST00000392004 TOM1O60784 492 aa13.4□□□□□ -0.26
COL6A3-205ENST00000392004 KRT28Q7Z3Y7 464 aa13.4□□□□□ -0.26
COL6A3-205ENST00000392004 USHBP1Q8N6Y0 703 aa13.39□□□□□ -0.27
COL6A3-205ENST00000392004 MYO5CQ9NQX4 1742 aa13.39□□□□□ -0.27
COL6A3-205ENST00000392004 MAPKBP1O60336 1514 aa13.39□□□□□ -0.27
COL6A3-205ENST00000392004 RALBP1Q15311 655 aa13.39□□□□□ -0.27
COL6A3-205ENST00000392004 DAXXQ9UER7 740 aaPredicted RBP13.39□□□□□ -0.27
COL6A3-205ENST00000392004 APAF1O14727 1248 aa13.38□□□□□ -0.27
COL6A3-205ENST00000392004 DIAPH1O60610 1272 aaKnown RBP13.38□□□□□ -0.27
COL6A3-205ENST00000392004 KAT6BQ8WYB5 2073 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms