RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PATL2C9JE40 543 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-204ENST00000389857 CPLX1O14810 134 aa15.61■□□□□ 0.09
CCDC88C-204ENST00000389857 MSH5O43196 834 aa15.61■□□□□ 0.09
CCDC88C-204ENST00000389857 CCDC43Q96MW1 224 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-204ENST00000389857 CCDC144AA2RUR9 1427 aa15.6■□□□□ 0.09
CCDC88C-204ENST00000389857 APPP05067 770 aa15.6■□□□□ 0.09
CCDC88C-204ENST00000389857 ZNF592Q92610 1267 aa15.6■□□□□ 0.09
CCDC88C-204ENST00000389857 IFIT2P09913 472 aaKnown RBP15.6■□□□□ 0.09
CCDC88C-204ENST00000389857 RRP12Q5JTH9 1297 aaKnown RBP15.6■□□□□ 0.09
CCDC88C-204ENST00000389857 TRAK1Q9UPV9 953 aa15.6■□□□□ 0.09
CCDC88C-204ENST00000389857 CDR1P51861 262 aa15.6■□□□□ 0.09
CCDC88C-204ENST00000389857 RRP7AQ9Y3A4 280 aaKnown RBP15.6■□□□□ 0.09
CCDC88C-204ENST00000389857 DDX58O95786 925 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-204ENST00000389857 DHX16O60231 1041 aaKnown RBP15.59■□□□□ 0.09
CCDC88C-204ENST00000389857 ZNF771Q7L3S4 317 aaPredicted RBP15.59■□□□□ 0.09
CCDC88C-204ENST00000389857 CWC22Q9HCG8 908 aaKnown RBP15.58■□□□□ 0.09
CCDC88C-204ENST00000389857 AK7Q96M32 723 aa15.58■□□□□ 0.08
CCDC88C-204ENST00000389857 NUTM2FA1L443 756 aa15.58■□□□□ 0.08
CCDC88C-204ENST00000389857 FOXD4L6Q3SYB3 417 aaPredicted RBP15.58■□□□□ 0.08
CCDC88C-204ENST00000389857 FOXD4L3Q6VB84 417 aaPredicted RBP15.58■□□□□ 0.08
CCDC88C-204ENST00000389857 NFXL1Q6ZNB6 911 aa15.58■□□□□ 0.08
CCDC88C-204ENST00000389857 KANK4Q5T7N3 995 aaPredicted RBP15.57■□□□□ 0.08
CCDC88C-204ENST00000389857 L3MBTL2Q969R5 705 aa15.57■□□□□ 0.08
CCDC88C-204ENST00000389857 HOMER1Q86YM7 354 aa15.57■□□□□ 0.08
CCDC88C-204ENST00000389857 RUFY1Q96T51 708 aa15.57■□□□□ 0.08
CCDC88C-204ENST00000389857 ABCC8Q09428 1581 aa15.57■□□□□ 0.08
CCDC88C-204ENST00000389857 DDX19BQ9UMR2 479 aa15.56■□□□□ 0.08
CCDC88C-204ENST00000389857 PANK3Q9H999 370 aa15.56■□□□□ 0.08
CCDC88C-204ENST00000389857 BICD2Q8TD16 824 aa15.56■□□□□ 0.08
CCDC88C-204ENST00000389857 FBXW7Q969H0 707 aa15.55■□□□□ 0.08
CCDC88C-204ENST00000389857 ACBD3Q9H3P7 528 aa15.55■□□□□ 0.08
CCDC88C-204ENST00000389857 ODF2Q5BJF6 829 aa15.55■□□□□ 0.08
CCDC88C-204ENST00000389857 GSE1Q14687 1217 aa15.55■□□□□ 0.08
CCDC88C-204ENST00000389857 NGEFQ8N5V2 710 aa15.55■□□□□ 0.08
CCDC88C-204ENST00000389857 SASS6Q6UVJ0 657 aa15.54■□□□□ 0.08
CCDC88C-204ENST00000389857 VGFO15240 615 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-204ENST00000389857 SAFBQ15424 915 aaKnown RBP eCLIP15.54■□□□□ 0.08
CCDC88C-204ENST00000389857 G3BP1Q13283 466 aaKnown RBP eCLIP15.54■□□□□ 0.08
CCDC88C-204ENST00000389857 CT47A1Q5JQC4 288 aaPredicted RBP15.54■□□□□ 0.08
CCDC88C-204ENST00000389857 EIF2S2P20042 333 aaKnown RBP15.54■□□□□ 0.08
CCDC88C-204ENST00000389857 CALRP27797 417 aaKnown RBP15.54■□□□□ 0.08
CCDC88C-204ENST00000389857 ELL2O00472 640 aaPredicted RBP15.53■□□□□ 0.08
CCDC88C-204ENST00000389857 TSHZ2Q9NRE2 1034 aa15.53■□□□□ 0.08
CCDC88C-204ENST00000389857 FBXO3Q9UK99 471 aa15.53■□□□□ 0.08
CCDC88C-204ENST00000389857 PDE4AP27815 886 aa15.53■□□□□ 0.08
CCDC88C-204ENST00000389857 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.53■□□□□ 0.082e-7■■■■■ 216.9
CCDC88C-204ENST00000389857 RRP1P56182 461 aaKnown RBP15.53■□□□□ 0.08
CCDC88C-204ENST00000389857 MEX3CQ5U5Q3 659 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-204ENST00000389857 NAP1L1P55209 391 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-204ENST00000389857 API5Q9BZZ5 524 aaKnown RBP15.52■□□□□ 0.08
CCDC88C-204ENST00000389857 BCL2L13Q9BXK5 485 aa15.52■□□□□ 0.07
CCDC88C-204ENST00000389857 BRMS1Q9HCU9 246 aa15.52■□□□□ 0.07
CCDC88C-204ENST00000389857 ARGLU1Q9NWB6 273 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-204ENST00000389857 EPS15P42566 896 aa15.51■□□□□ 0.07
CCDC88C-204ENST00000389857 HSP90AB4PQ58FF6 505 aa15.51■□□□□ 0.07
CCDC88C-204ENST00000389857 ERC2O15083 957 aa15.51■□□□□ 0.07
CCDC88C-204ENST00000389857 INTS3Q68E01 1043 aaKnown RBP15.51■□□□□ 0.07
CCDC88C-204ENST00000389857 AEBP2Q6ZN18 517 aaPredicted RBP15.51■□□□□ 0.07
CCDC88C-204ENST00000389857 SMC3Q9UQE7 1217 aa15.5■□□□□ 0.07
CCDC88C-204ENST00000389857 NOM1Q5C9Z4 860 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-204ENST00000389857 CRBNQ96SW2 442 aa15.5■□□□□ 0.07
CCDC88C-204ENST00000389857 CCDC88BA6NC98 1476 aa15.5■□□□□ 0.07
CCDC88C-204ENST00000389857 RDXP35241 583 aaKnown RBP15.5■□□□□ 0.07
CCDC88C-204ENST00000389857 RBM33Q96EV2 1170 aaKnown RBP15.49■□□□□ 0.07
CCDC88C-204ENST00000389857 NAT10Q9H0A0 1025 aaKnown RBP15.49■□□□□ 0.07
CCDC88C-204ENST00000389857 R3HCC1Q9Y3T6 440 aaKnown RBP15.49■□□□□ 0.07
CCDC88C-204ENST00000389857 RAPGEF2Q9Y4G8 1499 aa15.49■□□□□ 0.07
CCDC88C-204ENST00000389857 CCDC173Q0VFZ6 552 aa15.49■□□□□ 0.07
CCDC88C-204ENST00000389857 OLFM4Q6UX06 510 aa15.49■□□□□ 0.07
CCDC88C-204ENST00000389857 CCDC73Q6ZRK6 1079 aa15.49■□□□□ 0.07
CCDC88C-204ENST00000389857 DIAPH1O60610 1272 aaKnown RBP15.49■□□□□ 0.07
CCDC88C-204ENST00000389857 NUCB2P80303 420 aa15.48■□□□□ 0.07
CCDC88C-204ENST00000389857 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.48■□□□□ 0.07
CCDC88C-204ENST00000389857 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.48■□□□□ 0.07
CCDC88C-204ENST00000389857 MYO6Q9UM54 1294 aa15.48■□□□□ 0.07
CCDC88C-204ENST00000389857 XBP1P17861 261 aa15.48■□□□□ 0.07
CCDC88C-204ENST00000389857 NINLQ9Y2I6 1382 aa15.48■□□□□ 0.07
CCDC88C-204ENST00000389857 ST20-MTHFSA0A0A6YYL1 179 aa15.47■□□□□ 0.07
CCDC88C-204ENST00000389857 PSME1Q06323 249 aa15.47■□□□□ 0.07
CCDC88C-204ENST00000389857 SYTL4Q96C24 671 aaPredicted RBP15.47■□□□□ 0.07
CCDC88C-204ENST00000389857 COG6Q9Y2V7 657 aa15.47■□□□□ 0.07
CCDC88C-204ENST00000389857 ZBED9Q6R2W3 1325 aa15.47■□□□□ 0.07
CCDC88C-204ENST00000389857 MNS1Q8NEH6 495 aa15.47■□□□□ 0.07
CCDC88C-204ENST00000389857 CHMP5Q9NZZ3 219 aa15.47■□□□□ 0.07
CCDC88C-204ENST00000389857 RALYLQ86SE5 291 aaKnown RBP15.47■□□□□ 0.07
CCDC88C-204ENST00000389857 DZIP1LQ8IYY4 767 aaKnown RBP15.46■□□□□ 0.07
CCDC88C-204ENST00000389857 HSP90AB2PQ58FF8 381 aa15.46■□□□□ 0.07
CCDC88C-204ENST00000389857 VPS37CA5D8V6 355 aaPredicted RBP15.46■□□□□ 0.07
CCDC88C-204ENST00000389857 PLIN1O60240 522 aa15.46■□□□□ 0.06
CCDC88C-204ENST00000389857 TDRD9Q8NDG6 1382 aaKnown RBP15.45■□□□□ 0.06
CCDC88C-204ENST00000389857 FKBP5Q13451 457 aaPredicted RBP15.45■□□□□ 0.06
CCDC88C-204ENST00000389857 HSP90B2PQ58FF3 399 aa15.45■□□□□ 0.06
CCDC88C-204ENST00000389857 FHOD3Q2V2M9 1422 aa15.45■□□□□ 0.06
CCDC88C-204ENST00000389857 DCTN1Q14203 1278 aa15.45■□□□□ 0.06
CCDC88C-204ENST00000389857 RIPK4P57078 832 aa15.45■□□□□ 0.06
CCDC88C-204ENST00000389857 NECTIN2Q92692 538 aa15.44■□□□□ 0.06
CCDC88C-204ENST00000389857 WASHC2AQ641Q2 1341 aa15.44■□□□□ 0.06
CCDC88C-204ENST00000389857 USP47Q96K76 1375 aa15.44■□□□□ 0.06
CCDC88C-204ENST00000389857 MINK1Q8N4C8 1332 aaPredicted RBP15.44■□□□□ 0.06
CCDC88C-204ENST00000389857 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms