RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 LRCH3Q96II8 777 aa6.01□□□□□ -1.45
VPS13A-206ENST00000376646 RNF40O75150 1001 aa6.01□□□□□ -1.45
VPS13A-206ENST00000376646 RBM27Q9P2N5 1060 aaKnown RBP6□□□□□ -1.45
VPS13A-206ENST00000376646 FECHP22830 423 aa6□□□□□ -1.45
VPS13A-206ENST00000376646 LCE2AQ5TA79 106 aaPredicted RBP5.99□□□□□ -1.45
VPS13A-206ENST00000376646 EYA1Q99502 592 aa5.99□□□□□ -1.45
VPS13A-206ENST00000376646 SWT1Q5T5J6 900 aaKnown RBP5.98□□□□□ -1.45
VPS13A-206ENST00000376646 TSR3Q9UJK0 312 aaKnown RBP5.98□□□□□ -1.45
VPS13A-206ENST00000376646 FCHSD2O94868 740 aa5.97□□□□□ -1.45
VPS13A-206ENST00000376646 ADGRG1Q9Y653 693 aa5.97□□□□□ -1.45
VPS13A-206ENST00000376646 GPR37O15354 613 aa5.97□□□□□ -1.45
VPS13A-206ENST00000376646 PPP4CP60510 307 aa5.96□□□□□ -1.45
VPS13A-206ENST00000376646 SMYD5Q6GMV2 418 aa5.95□□□□□ -1.46
VPS13A-206ENST00000376646 NLRP7Q8WX94 980 aa5.95□□□□□ -1.46
VPS13A-206ENST00000376646 KRTAP17-1Q9BYP8 105 aa5.95□□□□□ -1.46
VPS13A-206ENST00000376646 APLP1P51693 650 aa5.94□□□□□ -1.46
VPS13A-206ENST00000376646 RCCD1A6NED2 376 aa5.94□□□□□ -1.46
VPS13A-206ENST00000376646 HIC1Q14526 733 aa5.94□□□□□ -1.46
VPS13A-206ENST00000376646 HDGFP51858 240 aaKnown RBP5.93□□□□□ -1.46
VPS13A-206ENST00000376646 GPIHBP1Q8IV16 184 aa5.93□□□□□ -1.46
VPS13A-206ENST00000376646 KRTAP9-9Q9BYP9 154 aa5.93□□□□□ -1.46
VPS13A-206ENST00000376646 KRTAP9-4Q9BYQ2 154 aa5.93□□□□□ -1.46
VPS13A-206ENST00000376646 GNPATO15228 680 aa5.92□□□□□ -1.46
VPS13A-206ENST00000376646 RBM46Q8TBY0 533 aaKnown RBP5.92□□□□□ -1.46
VPS13A-206ENST00000376646 ITGBL1O95965 494 aaPredicted RBP5.92□□□□□ -1.46
VPS13A-206ENST00000376646 DNAJB2P25686 324 aa5.91□□□□□ -1.46
VPS13A-206ENST00000376646 NYAP1Q6ZVC0 841 aa5.91□□□□□ -1.46
VPS13A-206ENST00000376646 PXYLP1Q8TE99 480 aa5.91□□□□□ -1.46
VPS13A-206ENST00000376646 TMEM134Q9H6X4 195 aa5.91□□□□□ -1.46
VPS13A-206ENST00000376646 METTL3Q86U44 580 aaKnown RBP5.91□□□□□ -1.46
VPS13A-206ENST00000376646 ZNF516Q92618 1163 aa5.91□□□□□ -1.46
VPS13A-206ENST00000376646 PHOX2BQ99453 314 aa5.91□□□□□ -1.46
VPS13A-206ENST00000376646 TJAP1Q5JTD0 557 aa5.9□□□□□ -1.46
VPS13A-206ENST00000376646 SLF2Q8IX21 1173 aa5.9□□□□□ -1.46
VPS13A-206ENST00000376646 MTRQ99707 1265 aa5.9□□□□□ -1.46
VPS13A-206ENST00000376646 COPS2P61201 443 aa5.9□□□□□ -1.47
VPS13A-206ENST00000376646 KCNC4Q03721 635 aa5.9□□□□□ -1.47
VPS13A-206ENST00000376646 WFS1O76024 890 aa5.89□□□□□ -1.47
VPS13A-206ENST00000376646 SLC10A3P09131 477 aa5.88□□□□□ -1.47
VPS13A-206ENST00000376646 NKX2-3Q8TAU0 364 aa5.88□□□□□ -1.47
VPS13A-206ENST00000376646 OATP04181 439 aa5.87□□□□□ -1.47
VPS13A-206ENST00000376646 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.86□□□□□ -1.47
VPS13A-206ENST00000376646 CFHP08603 1231 aa5.86□□□□□ -1.47
VPS13A-206ENST00000376646 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.86□□□□□ -1.47
VPS13A-206ENST00000376646 BLOC1S3Q6QNY0 202 aa5.85□□□□□ -1.47
VPS13A-206ENST00000376646 IL21Q9HBE4 155 aa5.85□□□□□ -1.47
VPS13A-206ENST00000376646 TULP1O00294 542 aaPredicted RBP5.85□□□□□ -1.47
VPS13A-206ENST00000376646 SLC4A3P48751 1232 aa5.85□□□□□ -1.47
VPS13A-206ENST00000376646 LMOD2Q6P5Q4 547 aa5.85□□□□□ -1.47
VPS13A-206ENST00000376646 PCDHB3Q9Y5E6 796 aa5.84□□□□□ -1.47
VPS13A-206ENST00000376646 DDX11L8A8MPP1 907 aa5.83□□□□□ -1.48
VPS13A-206ENST00000376646 TLL1O43897 1013 aa5.83□□□□□ -1.48
VPS13A-206ENST00000376646 PUS10Q3MIT2 529 aaKnown RBP5.83□□□□□ -1.48
VPS13A-206ENST00000376646 MAP2K5Q13163 448 aa5.82□□□□□ -1.48
VPS13A-206ENST00000376646 RDH13Q8NBN7 331 aa5.82□□□□□ -1.48
VPS13A-206ENST00000376646 IRF6O14896 467 aa5.82□□□□□ -1.48
VPS13A-206ENST00000376646 PPP1R18Q6NYC8 613 aa5.82□□□□□ -1.48
VPS13A-206ENST00000376646 CCDC102AQ96A19 550 aa5.82□□□□□ -1.48
VPS13A-206ENST00000376646 DAXXQ9UER7 740 aaPredicted RBP5.82□□□□□ -1.48
VPS13A-206ENST00000376646 ZPR1O75312 459 aa5.81□□□□□ -1.48
VPS13A-206ENST00000376646 NECTIN2Q92692 538 aa5.81□□□□□ -1.48
VPS13A-206ENST00000376646 ACTN4O43707 911 aaKnown RBP5.81□□□□□ -1.48
VPS13A-206ENST00000376646 KMT5BQ4FZB7 885 aa5.81□□□□□ -1.48
VPS13A-206ENST00000376646 MDM2Q00987 491 aaPredicted RBP5.8□□□□□ -1.48
VPS13A-206ENST00000376646 FUT2Q10981 343 aa5.79□□□□□ -1.48
VPS13A-206ENST00000376646 KRTAP5-3Q6L8H2 238 aa5.79□□□□□ -1.48
VPS13A-206ENST00000376646 PRR14Q9BWN1 585 aa5.79□□□□□ -1.48
VPS13A-206ENST00000376646 ZC3H15Q8WU90 426 aaKnown RBP5.78□□□□□ -1.48
VPS13A-206ENST00000376646 KRTAP4-12Q9BQ66 201 aa5.78□□□□□ -1.48
VPS13A-206ENST00000376646 KRTAP9-8Q9BYQ0 159 aa5.78□□□□□ -1.48
VPS13A-206ENST00000376646 MINK1Q8N4C8 1332 aaPredicted RBP5.78□□□□□ -1.48
VPS13A-206ENST00000376646 PPEF1O14829 653 aaPredicted RBP5.77□□□□□ -1.49
VPS13A-206ENST00000376646 SCUBE3Q8IX30 993 aa5.77□□□□□ -1.49
VPS13A-206ENST00000376646 KRI1Q8N9T8 703 aaKnown RBP5.77□□□□□ -1.49
VPS13A-206ENST00000376646 REPIN1Q9BWE0 567 aaKnown RBP5.77□□□□□ -1.49
VPS13A-206ENST00000376646 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.77□□□□□ -1.49
VPS13A-206ENST00000376646 S1PR4O95977 384 aa5.76□□□□□ -1.49
VPS13A-206ENST00000376646 GCGRP47871 477 aa5.76□□□□□ -1.49
VPS13A-206ENST00000376646 PRKD2Q9BZL6 878 aa5.76□□□□□ -1.49
VPS13A-206ENST00000376646 ZMYND10O75800 440 aa5.76□□□□□ -1.49
VPS13A-206ENST00000376646 IGHA1P01876 353 aa5.76□□□□□ -1.49
VPS13A-206ENST00000376646 LCE1DQ5T752 114 aa5.76□□□□□ -1.49
VPS13A-206ENST00000376646 HLA-CQ95604 372 aa5.76□□□□□ -1.49
VPS13A-206ENST00000376646 RNF223E7ERA6 249 aa5.75□□□□□ -1.49
VPS13A-206ENST00000376646 RSPH4AQ5TD94 716 aa5.75□□□□□ -1.49
VPS13A-206ENST00000376646 BARGINQ6ZT62 677 aa5.75□□□□□ -1.49
VPS13A-206ENST00000376646 SULF1Q8IWU6 871 aa5.75□□□□□ -1.49
VPS13A-206ENST00000376646 CD46P15529 392 aa5.74□□□□□ -1.49
VPS13A-206ENST00000376646 MORN1Q5T089 497 aa5.74□□□□□ -1.49
VPS13A-206ENST00000376646 SLC27A5Q9Y2P5 690 aa5.74□□□□□ -1.49
VPS13A-206ENST00000376646 NR1I2O75469 434 aa5.74□□□□□ -1.49
VPS13A-206ENST00000376646 EMID1Q96A84 441 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-206ENST00000376646 ADH1BP00325 375 aa5.73□□□□□ -1.49
VPS13A-206ENST00000376646 ATP6V1AP38606 617 aa5.73□□□□□ -1.49
VPS13A-206ENST00000376646 RNF19BQ6ZMZ0 732 aa5.72□□□□□ -1.49
VPS13A-206ENST00000376646 SPSB2Q99619 263 aa5.72□□□□□ -1.49
VPS13A-206ENST00000376646 GPCPD1Q9NPB8 672 aa5.72□□□□□ -1.49
VPS13A-206ENST00000376646 PRDM9Q9NQV7 894 aa5.72□□□□□ -1.49
VPS13A-206ENST00000376646 FAM217BQ9NTX9 383 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-206ENST00000376646 SLC24A1O60721 1099 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms