RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 SASS6Q6UVJ0 657 aa14.5□□□□□ -0.09
PTPN1-201ENST00000371621 CFDP1Q9UEE9 299 aaPredicted RBP14.5□□□□□ -0.09
PTPN1-201ENST00000371621 RAD54L2Q9Y4B4 1467 aa14.5□□□□□ -0.09
PTPN1-201ENST00000371621 OFD1O75665 1012 aa14.5□□□□□ -0.09
PTPN1-201ENST00000371621 ZRSR1Q15695 479 aaKnown RBP14.5□□□□□ -0.09
PTPN1-201ENST00000371621 SMAP1Q8IYB5 467 aaPredicted RBP14.49□□□□□ -0.09
PTPN1-201ENST00000371621 DIAPH3Q9NSV4 1193 aa14.49□□□□□ -0.09
PTPN1-201ENST00000371621 DYNC1I1O14576 645 aa14.49□□□□□ -0.09
PTPN1-201ENST00000371621 ZNF830Q96NB3 372 aaPredicted RBP14.49□□□□□ -0.09
PTPN1-201ENST00000371621 PRXQ9BXM0 1461 aa14.49□□□□□ -0.09
PTPN1-201ENST00000371621 SYCE3A1L190 88 aa14.48□□□□□ -0.09
PTPN1-201ENST00000371621 ROCK2O75116 1388 aaKnown RBP14.48□□□□□ -0.09
PTPN1-201ENST00000371621 GOLGA6L6A8MZA4 724 aa14.48□□□□□ -0.09
PTPN1-201ENST00000371621 ARAP1Q96P48 1450 aa14.47□□□□□ -0.09
PTPN1-201ENST00000371621 SKIDA1Q1XH10 827 aa14.46□□□□□ -0.09
PTPN1-201ENST00000371621 CERS3Q8IU89 383 aa14.46□□□□□ -0.09
PTPN1-201ENST00000371621 FHOD3Q2V2M9 1422 aa14.46□□□□□ -0.1
PTPN1-201ENST00000371621 IGHDP01880 384 aa14.45□□□□□ -0.1
PTPN1-201ENST00000371621 SSFA2P28290 1259 aa14.45□□□□□ -0.1
PTPN1-201ENST00000371621 CFAP53Q96M91 514 aa14.45□□□□□ -0.1
PTPN1-201ENST00000371621 ST18O60284 1047 aa14.45□□□□□ -0.1
PTPN1-201ENST00000371621 TAF7LQ5H9L4 462 aa14.45□□□□□ -0.1
PTPN1-201ENST00000371621 CCDC94Q9BW85 323 aaPredicted RBP14.44□□□□□ -0.1
PTPN1-201ENST00000371621 PHF14O94880 888 aa14.44□□□□□ -0.1
PTPN1-201ENST00000371621 CCAR2Q8N163 923 aaKnown RBP14.44□□□□□ -0.1
PTPN1-201ENST00000371621 UACAQ9BZF9 1416 aa14.43□□□□□ -0.1
PTPN1-201ENST00000371621 CDCA8Q53HL2 280 aa14.43□□□□□ -0.1
PTPN1-201ENST00000371621 U2AF1L5P0DN76 240 aaPredicted RBP14.43□□□□□ -0.1
PTPN1-201ENST00000371621 U2AF1Q01081 240 aaKnown RBP eCLIP14.43□□□□□ -0.1
PTPN1-201ENST00000371621 NUCB2P80303 420 aa14.42□□□□□ -0.1
PTPN1-201ENST00000371621 RBM27Q9P2N5 1060 aaKnown RBP14.42□□□□□ -0.1
PTPN1-201ENST00000371621 ERBB4Q15303 1308 aa14.42□□□□□ -0.1
PTPN1-201ENST00000371621 RBM25P49756 843 aaKnown RBP14.41□□□□□ -0.1
PTPN1-201ENST00000371621 ZFP91Q96JP5 570 aaPredicted RBP14.41□□□□□ -0.1
PTPN1-201ENST00000371621 ELL2O00472 640 aaPredicted RBP14.41□□□□□ -0.1
PTPN1-201ENST00000371621 NRDCO43847 1150 aa14.4□□□□□ -0.1
PTPN1-201ENST00000371621 LETM1O95202 739 aaPredicted RBP14.4□□□□□ -0.1
PTPN1-201ENST00000371621 TAF3Q5VWG9 929 aa14.4□□□□□ -0.1
PTPN1-201ENST00000371621 BRD4O60885 1362 aaPredicted RBP14.4□□□□□ -0.1
PTPN1-201ENST00000371621 GNL2Q13823 731 aaKnown RBP14.4□□□□□ -0.1
PTPN1-201ENST00000371621 HTATSF1O43719 755 aaKnown RBP14.4□□□□□ -0.1
PTPN1-201ENST00000371621 IRX3P78415 501 aaPredicted RBP14.39□□□□□ -0.11
PTPN1-201ENST00000371621 BIVM-ERCC5R4GMW8 1640 aa14.39□□□□□ -0.11
PTPN1-201ENST00000371621 GAS2L3Q86XJ1 694 aa14.39□□□□□ -0.11
PTPN1-201ENST00000371621 TBC1D32Q96NH3 1257 aa14.38□□□□□ -0.11
PTPN1-201ENST00000371621 MORC1Q86VD1 984 aa14.38□□□□□ -0.11
PTPN1-201ENST00000371621 TSPY26PQ9H489 355 aa14.38□□□□□ -0.11
PTPN1-201ENST00000371621 TEX35Q5T0J7 233 aa14.38□□□□□ -0.11
PTPN1-201ENST00000371621 GPATCH11Q8N954 259 aa14.38□□□□□ -0.11
PTPN1-201ENST00000371621 ZKSCAN2Q63HK3 967 aa14.38□□□□□ -0.11
PTPN1-201ENST00000371621 ERICH3Q5RHP9 1530 aa14.37□□□□□ -0.11
PTPN1-201ENST00000371621 TRIM6-TRIM34B2RNG4 842 aa14.37□□□□□ -0.11
PTPN1-201ENST00000371621 TRIM34Q9BYJ4 488 aa14.37□□□□□ -0.11
PTPN1-201ENST00000371621 USP25Q9UHP3 1055 aa14.37□□□□□ -0.11
PTPN1-201ENST00000371621 TPD52L1Q16890 204 aaPredicted RBP14.37□□□□□ -0.11
PTPN1-201ENST00000371621 KIF16BQ96L93 1317 aa14.37□□□□□ -0.11
PTPN1-201ENST00000371621 TTC12Q9H892 705 aaPredicted RBP14.37□□□□□ -0.11
PTPN1-201ENST00000371621 ZBTB22O15209 634 aa14.36□□□□□ -0.11
PTPN1-201ENST00000371621 GTPBP4Q9BZE4 634 aaKnown RBP14.36□□□□□ -0.11
PTPN1-201ENST00000371621 ZKSCAN5Q9Y2L8 839 aa14.36□□□□□ -0.11
PTPN1-201ENST00000371621 K7ELQ4 463 aaPredicted RBP14.36□□□□□ -0.11
PTPN1-201ENST00000371621 DZIP1LQ8IYY4 767 aaKnown RBP14.36□□□□□ -0.11
PTPN1-201ENST00000371621 GOLGA6L1Q8N7Z2 621 aa14.36□□□□□ -0.11
PTPN1-201ENST00000371621 MCCP23508 829 aa14.36□□□□□ -0.11
PTPN1-201ENST00000371621 U2AF2P26368 475 aaKnown RBP eCLIP14.36□□□□□ -0.111e-6■■■■□ 25.1
PTPN1-201ENST00000371621 GORABQ5T7V8 394 aa14.36□□□□□ -0.11
PTPN1-201ENST00000371621 IPO8O15397 1037 aaKnown RBP14.35□□□□□ -0.11
PTPN1-201ENST00000371621 GTF2F1P35269 517 aaKnown RBP eCLIP14.35□□□□□ -0.11
PTPN1-201ENST00000371621 PRIM1P49642 420 aaKnown RBP14.35□□□□□ -0.11
PTPN1-201ENST00000371621 C17orf53Q8N3J3 647 aaPredicted RBP14.35□□□□□ -0.11
PTPN1-201ENST00000371621 KIF20AO95235 890 aa14.35□□□□□ -0.11
PTPN1-201ENST00000371621 TNNT1P13805 278 aa14.35□□□□□ -0.11
PTPN1-201ENST00000371621 FBXW7Q969H0 707 aa14.35□□□□□ -0.11
PTPN1-201ENST00000371621 MAPKBP1O60336 1514 aa14.35□□□□□ -0.11
PTPN1-201ENST00000371621 TIGD1Q96MW7 591 aa14.34□□□□□ -0.11
PTPN1-201ENST00000371621 NUP155O75694 1391 aa14.34□□□□□ -0.11
PTPN1-201ENST00000371621 CCDC112Q8NEF3 446 aa14.34□□□□□ -0.11
PTPN1-201ENST00000371621 ZBTB9Q96C00 473 aa14.33□□□□□ -0.11
PTPN1-201ENST00000371621 TMX1Q9H3N1 280 aa14.33□□□□□ -0.12
PTPN1-201ENST00000371621 LRRC9Q6ZRR7 1453 aa14.33□□□□□ -0.12
PTPN1-201ENST00000371621 PATL2C9JE40 543 aaKnown RBP14.33□□□□□ -0.12
PTPN1-201ENST00000371621 GPS2Q13227 327 aa14.33□□□□□ -0.12
PTPN1-201ENST00000371621 PDS5BQ9NTI5 1447 aa14.33□□□□□ -0.12
PTPN1-201ENST00000371621 RTF1Q92541 710 aaKnown RBP14.32□□□□□ -0.12
PTPN1-201ENST00000371621 C16orf45Q96MC5 204 aaPredicted RBP14.32□□□□□ -0.12
PTPN1-201ENST00000371621 TOMM22Q9NS69 142 aa14.32□□□□□ -0.12
PTPN1-201ENST00000371621 CCDC27Q2M243 656 aa14.32□□□□□ -0.12
PTPN1-201ENST00000371621 NBPF1Q3BBV0 1214 aa14.32□□□□□ -0.12
PTPN1-201ENST00000371621 HOMER1Q86YM7 354 aa14.32□□□□□ -0.12
PTPN1-201ENST00000371621 GDPD2Q9HCC8 539 aa14.32□□□□□ -0.12
PTPN1-201ENST00000371621 POLR3GO15318 223 aaPredicted RBP14.31□□□□□ -0.12
PTPN1-201ENST00000371621 BAG4O95429 457 aaKnown RBP14.31□□□□□ -0.12
PTPN1-201ENST00000371621 RIPK4P57078 832 aa14.31□□□□□ -0.12
PTPN1-201ENST00000371621 ZSCAN23Q3MJ62 389 aa14.31□□□□□ -0.12
PTPN1-201ENST00000371621 POLA1P09884 1462 aaPredicted RBP14.31□□□□□ -0.12
PTPN1-201ENST00000371621 TRIM5Q9C035 493 aa14.31□□□□□ -0.12
PTPN1-201ENST00000371621 RBM42Q9BTD8 480 aaKnown RBP14.31□□□□□ -0.12
PTPN1-201ENST00000371621 FGD6Q6ZV73 1430 aa14.31□□□□□ -0.12
PTPN1-201ENST00000371621 IPO4Q8TEX9 1081 aaKnown RBP14.31□□□□□ -0.12
PTPN1-201ENST00000371621 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms