RNA–Protein interactions for RNA: ENST00000368436.1

CKS1B-202, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 2 BASIC

Gene CKS1B, Length 820 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-202ENST00000368436 IQGAP3Q86VI3 1631 aa24.64■■□□□ 1.53
CKS1B-202ENST00000368436 NWD1Q149M9 1564 aa24.63■■□□□ 1.53
CKS1B-202ENST00000368436 TMEM94Q12767 1356 aa24.61■■□□□ 1.53
CKS1B-202ENST00000368436 NKTRP30414 1462 aaKnown RBP24.59■■□□□ 1.53
CKS1B-202ENST00000368436 PLEKHG1Q9ULL1 1385 aa24.59■■□□□ 1.53
CKS1B-202ENST00000368436 RIMS2Q9UQ26 1411 aa24.59■■□□□ 1.53
CKS1B-202ENST00000368436 HDGFP51858 240 aaKnown RBP24.58■■□□□ 1.53
CKS1B-202ENST00000368436 CHD2O14647 1828 aaKnown RBP24.58■■□□□ 1.53
CKS1B-202ENST00000368436 PROSER2Q86WR7 435 aaPredicted RBP24.57■■□□□ 1.52
CKS1B-202ENST00000368436 FAM135BQ49AJ0 1406 aa24.57■■□□□ 1.52
CKS1B-202ENST00000368436 SENP3Q9H4L4 574 aaPredicted RBP24.56■■□□□ 1.52
CKS1B-202ENST00000368436 BCANQ96GW7 911 aa24.55■■□□□ 1.52
CKS1B-202ENST00000368436 NUP155O75694 1391 aa24.54■■□□□ 1.52
CKS1B-202ENST00000368436 ITGAEP38570 1179 aa24.54■■□□□ 1.52
CKS1B-202ENST00000368436 PPARGC1BQ86YN6 1023 aaKnown RBP24.53■■□□□ 1.52
CKS1B-202ENST00000368436 PPP1R15AO75807 674 aaPredicted RBP24.52■■□□□ 1.52
CKS1B-202ENST00000368436 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.52■■□□□ 1.52
CKS1B-202ENST00000368436 RBM33Q96EV2 1170 aaKnown RBP24.52■■□□□ 1.52
CKS1B-202ENST00000368436 TBX22Q9Y458 520 aa24.51■■□□□ 1.51
CKS1B-202ENST00000368436 ROBO1Q9Y6N7 1651 aa24.5■■□□□ 1.51
CKS1B-202ENST00000368436 CHGAP10645 457 aaKnown RBP24.5■■□□□ 1.51
CKS1B-202ENST00000368436 PHF23Q9BUL5 403 aaPredicted RBP24.48■■□□□ 1.51
CKS1B-202ENST00000368436 ADAMTS13Q76LX8 1427 aa24.47■■□□□ 1.51
CKS1B-202ENST00000368436 DIP2AQ14689 1571 aa24.46■■□□□ 1.51
CKS1B-202ENST00000368436 MSH6P52701 1360 aa24.46■■□□□ 1.51
CKS1B-202ENST00000368436 SPHKAPQ2M3C7 1700 aa24.45■■□□□ 1.5
CKS1B-202ENST00000368436 NCOA3Q9Y6Q9 1424 aa24.44■■□□□ 1.5
CKS1B-202ENST00000368436 NUTM2DQ5VT03 806 aaPredicted RBP24.43■■□□□ 1.5
CKS1B-202ENST00000368436 RRBP1Q9P2E9 1410 aaKnown RBP24.43■■□□□ 1.5
CKS1B-202ENST00000368436 PIK3R4Q99570 1358 aa24.42■■□□□ 1.5
CKS1B-202ENST00000368436 SLAIN2Q9P270 581 aa24.41■■□□□ 1.5
CKS1B-202ENST00000368436 TRPM2O94759 1503 aa24.38■■□□□ 1.49
CKS1B-202ENST00000368436 RGS17Q9UGC6 210 aaPredicted RBP24.37■■□□□ 1.49
CKS1B-202ENST00000368436 NRXN3Q9Y4C0 1643 aa24.36■■□□□ 1.49
CKS1B-202ENST00000368436 NAIPQ13075 1403 aa24.35■■□□□ 1.49
CKS1B-202ENST00000368436 PHLPP1O60346 1717 aa24.35■■□□□ 1.49
CKS1B-202ENST00000368436 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.35■■□□□ 1.49
CKS1B-202ENST00000368436 PTPRUQ92729 1446 aa24.34■■□□□ 1.49
CKS1B-202ENST00000368436 SETBP1Q9Y6X0 1596 aa24.33■■□□□ 1.49
CKS1B-202ENST00000368436 CLTCL1P53675 1640 aa24.32■■□□□ 1.48
CKS1B-202ENST00000368436 AMOTL2Q9Y2J4 779 aa24.32■■□□□ 1.48
CKS1B-202ENST00000368436 C19orf44Q9H6X5 657 aa24.31■■□□□ 1.48
CKS1B-202ENST00000368436 XRN1Q8IZH2 1706 aaKnown RBP24.3■■□□□ 1.48
CKS1B-202ENST00000368436 C14orf37Q86TY3 774 aa24.29■■□□□ 1.48
CKS1B-202ENST00000368436 CADPS2Q86UW7 1296 aa24.29■■□□□ 1.48
CKS1B-202ENST00000368436 KIF1BO60333 1816 aa24.28■■□□□ 1.48
CKS1B-202ENST00000368436 COL16A1Q07092 1604 aaPredicted RBP24.28■■□□□ 1.48
CKS1B-202ENST00000368436 ZNF326Q5BKZ1 582 aaKnown RBP24.28■■□□□ 1.48
CKS1B-202ENST00000368436 NEXMIFQ5QGS0 1516 aa24.27■■□□□ 1.48
CKS1B-202ENST00000368436 JCADQ9P266 1359 aa24.27■■□□□ 1.48
CKS1B-202ENST00000368436 ATF3P18847 181 aa24.26■■□□□ 1.47
CKS1B-202ENST00000368436 HFM1A2PYH4 1435 aa24.25■■□□□ 1.47
CKS1B-202ENST00000368436 AHDC1Q5TGY3 1603 aaPredicted RBP24.24■■□□□ 1.47
CKS1B-202ENST00000368436 METP08581 1390 aa24.23■■□□□ 1.47
CKS1B-202ENST00000368436 DCCP43146 1447 aa24.22■■□□□ 1.47
CKS1B-202ENST00000368436 POTEAQ6S8J7 498 aa24.21■■□□□ 1.47
CKS1B-202ENST00000368436 TRIM52Q96A61 297 aa24.18■■□□□ 1.46
CKS1B-202ENST00000368436 SHPRHQ149N8 1683 aa24.17■■□□□ 1.46
CKS1B-202ENST00000368436 BRINP3Q76B58 766 aa24.16■■□□□ 1.46
CKS1B-202ENST00000368436 SETD1AO15047 1707 aaKnown RBP24.15■■□□□ 1.46
CKS1B-202ENST00000368436 SPATA31A6Q5VVP1 1343 aa24.15■■□□□ 1.46
CKS1B-202ENST00000368436 MST1RQ04912 1400 aa24.14■■□□□ 1.45
CKS1B-202ENST00000368436 SLC4A1APQ9BWU0 796 aaKnown RBP24.13■■□□□ 1.45
CKS1B-202ENST00000368436 LRP6O75581 1613 aa24.13■■□□□ 1.45
CKS1B-202ENST00000368436 NALCNQ8IZF0 1738 aa24.13■■□□□ 1.45
CKS1B-202ENST00000368436 ADGRL3Q9HAR2 1447 aa24.12■■□□□ 1.45
CKS1B-202ENST00000368436 ASXL1Q8IXJ9 1541 aa24.12■■□□□ 1.45
CKS1B-202ENST00000368436 VGFO15240 615 aaPredicted RBP24.12■■□□□ 1.45
CKS1B-202ENST00000368436 RPGRIP1LQ68CZ1 1315 aa24.11■■□□□ 1.45
CKS1B-202ENST00000368436 PPLO60437 1756 aa24.11■■□□□ 1.45
CKS1B-202ENST00000368436 NHSL1Q5SYE7 1610 aa24.11■■□□□ 1.45
CKS1B-202ENST00000368436 PTCH1Q13635 1447 aa24.06■■□□□ 1.44
CKS1B-202ENST00000368436 PRAG1Q86YV5 1406 aa24.06■■□□□ 1.44
CKS1B-202ENST00000368436 SETD5Q9C0A6 1442 aa24.06■■□□□ 1.44
CKS1B-202ENST00000368436 ROBO2Q9HCK4 1378 aa24.03■■□□□ 1.44
CKS1B-202ENST00000368436 FOXD1Q16676 465 aa24.02■■□□□ 1.44
CKS1B-202ENST00000368436 MEX3CQ5U5Q3 659 aaKnown RBP24.02■■□□□ 1.44
CKS1B-202ENST00000368436 LAMC1P11047 1609 aa24■■□□□ 1.43
CKS1B-202ENST00000368436 ZNF772Q68DY9 489 aaPredicted RBP24■■□□□ 1.43
CKS1B-202ENST00000368436 LRRC59Q96AG4 307 aaKnown RBP24■■□□□ 1.43
CKS1B-202ENST00000368436 C1orf167Q5SNV9 1468 aa24■■□□□ 1.43
CKS1B-202ENST00000368436 MPHOSPH9Q99550 1183 aa23.98■■□□□ 1.43
CKS1B-202ENST00000368436 IFT172Q9UG01 1749 aa23.98■■□□□ 1.43
CKS1B-202ENST00000368436 CCDC144AA2RUR9 1427 aa23.97■■□□□ 1.43
CKS1B-202ENST00000368436 SPATA31E1Q6ZUB1 1445 aa23.97■■□□□ 1.43
CKS1B-202ENST00000368436 DDX17Q92841 729 aaKnown RBP23.97■■□□□ 1.43
CKS1B-202ENST00000368436 NUTM2BA6NNL0 878 aaPredicted RBP23.96■■□□□ 1.43
CKS1B-202ENST00000368436 NUTM2EB1AL46 878 aaPredicted RBP23.96■■□□□ 1.43
CKS1B-202ENST00000368436 NUTM2AQ8IVF1 878 aaPredicted RBP23.96■■□□□ 1.43
CKS1B-202ENST00000368436 PNPLA6Q8IY17 1366 aa23.94■■□□□ 1.42
CKS1B-202ENST00000368436 ADGRF5Q8IZF2 1346 aa23.93■■□□□ 1.42
CKS1B-202ENST00000368436 ANKRD30BQ9BXX2 1392 aa23.91■■□□□ 1.42
CKS1B-202ENST00000368436 ORAI2Q96SN7 254 aa23.91■■□□□ 1.42
CKS1B-202ENST00000368436 ACIN1Q9UKV3 1341 aaKnown RBP23.9■■□□□ 1.42
CKS1B-202ENST00000368436 RGL3Q3MIN7 710 aa23.9■■□□□ 1.42
CKS1B-202ENST00000368436 SOS2Q07890 1332 aaPredicted RBP23.89■■□□□ 1.42
CKS1B-202ENST00000368436 CDC42BPGQ6DT37 1551 aa23.89■■□□□ 1.41
CKS1B-202ENST00000368436 AFF2P51816 1311 aa23.88■■□□□ 1.41
CKS1B-202ENST00000368436 TECPR2O15040 1411 aa23.87■■□□□ 1.41
CKS1B-202ENST00000368436 RXRBP28702 533 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms