RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 L3MBTL2Q969R5 705 aa13.46□□□□□ -0.25
CLIP1-203ENST00000361654 RILPL2Q969X0 211 aa13.46□□□□□ -0.25
CLIP1-203ENST00000361654 ATP6V1DQ9Y5K8 247 aa13.46□□□□□ -0.25
CLIP1-203ENST00000361654 CCDC88BA6NC98 1476 aa13.45□□□□□ -0.26
CLIP1-203ENST00000361654 IFIT2P09913 472 aaKnown RBP13.45□□□□□ -0.26
CLIP1-203ENST00000361654 G3BP1Q13283 466 aaKnown RBP eCLIP13.45□□□□□ -0.26
CLIP1-203ENST00000361654 KANK4Q5T7N3 995 aaPredicted RBP13.45□□□□□ -0.26
CLIP1-203ENST00000361654 GPRASP1Q5JY77 1395 aa13.45□□□□□ -0.26
CLIP1-203ENST00000361654 NOL8Q76FK4 1167 aaKnown RBP13.45□□□□□ -0.26
CLIP1-203ENST00000361654 DIAPH1O60610 1272 aaKnown RBP13.45□□□□□ -0.26
CLIP1-203ENST00000361654 ELL2O00472 640 aaPredicted RBP13.45□□□□□ -0.26
CLIP1-203ENST00000361654 ZKSCAN1P17029 563 aaPredicted RBP13.44□□□□□ -0.26
CLIP1-203ENST00000361654 PROSER2Q86WR7 435 aaPredicted RBP13.44□□□□□ -0.26
CLIP1-203ENST00000361654 CPLX1O14810 134 aa13.44□□□□□ -0.26
CLIP1-203ENST00000361654 FHOD3Q2V2M9 1422 aa13.44□□□□□ -0.26
CLIP1-203ENST00000361654 STAC3Q96MF2 364 aa13.43□□□□□ -0.26
CLIP1-203ENST00000361654 RAB3GAP2Q9H2M9 1393 aa13.43□□□□□ -0.26
CLIP1-203ENST00000361654 HSP90AB4PQ58FF6 505 aa13.43□□□□□ -0.26
CLIP1-203ENST00000361654 DHX57Q6P158 1386 aaKnown RBP13.43□□□□□ -0.26
CLIP1-203ENST00000361654 ANKRD20A12PQ8NF67 263 aa13.42□□□□□ -0.26
CLIP1-203ENST00000361654 API5Q9BZZ5 524 aaKnown RBP13.42□□□□□ -0.26
CLIP1-203ENST00000361654 PPP1R1BQ9UD71 204 aaPredicted RBP13.42□□□□□ -0.26
CLIP1-203ENST00000361654 KIF15Q9NS87 1388 aa13.42□□□□□ -0.26
CLIP1-203ENST00000361654 ZKSCAN2Q63HK3 967 aa13.42□□□□□ -0.26
CLIP1-203ENST00000361654 SAMD1Q6SPF0 538 aaPredicted RBP13.42□□□□□ -0.26
CLIP1-203ENST00000361654 RNF20Q5VTR2 975 aa13.41□□□□□ -0.26
CLIP1-203ENST00000361654 PANK3Q9H999 370 aa13.41□□□□□ -0.26
CLIP1-203ENST00000361654 RRP7AQ9Y3A4 280 aaKnown RBP13.41□□□□□ -0.26
CLIP1-203ENST00000361654 WWC2Q6AWC2 1192 aa13.4□□□□□ -0.26
CLIP1-203ENST00000361654 ROCK1Q13464 1354 aa13.4□□□□□ -0.26
CLIP1-203ENST00000361654 NFXL1Q6ZNB6 911 aa13.4□□□□□ -0.26
CLIP1-203ENST00000361654 IPO7O95373 1038 aaKnown RBP13.4□□□□□ -0.26
CLIP1-203ENST00000361654 RIC3Q7Z5B4 369 aa13.39□□□□□ -0.27
CLIP1-203ENST00000361654 HOOK1Q9UJC3 728 aaKnown RBP13.39□□□□□ -0.27
CLIP1-203ENST00000361654 FKBP5Q13451 457 aaPredicted RBP13.39□□□□□ -0.27
CLIP1-203ENST00000361654 E9PSI1 815 aa13.39□□□□□ -0.27
CLIP1-203ENST00000361654 SLKQ9H2G2 1235 aaPredicted RBP13.39□□□□□ -0.27
CLIP1-203ENST00000361654 MCTP1Q6DN14 999 aa13.39□□□□□ -0.27
CLIP1-203ENST00000361654 MIA2Q96PC5 1412 aa13.38□□□□□ -0.27
CLIP1-203ENST00000361654 MYBBP1AQ9BQG0 1328 aaKnown RBP13.38□□□□□ -0.27
CLIP1-203ENST00000361654 ANKRD45Q5TZF3 282 aa13.38□□□□□ -0.27
CLIP1-203ENST00000361654 NLRP6P59044 892 aa13.38□□□□□ -0.27
CLIP1-203ENST00000361654 CCDC70Q6NSX1 233 aa13.38□□□□□ -0.27
CLIP1-203ENST00000361654 THEMISQ8N1K5 641 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-203ENST00000361654 ST20-MTHFSA0A0A6YYL1 179 aa13.37□□□□□ -0.27
CLIP1-203ENST00000361654 SAFBQ15424 915 aaKnown RBP eCLIP13.37□□□□□ -0.27
CLIP1-203ENST00000361654 IKQ13123 557 aaPredicted RBP13.37□□□□□ -0.27
CLIP1-203ENST00000361654 PCMTD1Q96MG8 357 aaPredicted RBP13.37□□□□□ -0.27
CLIP1-203ENST00000361654 CCDC27Q2M243 656 aa13.37□□□□□ -0.27
CLIP1-203ENST00000361654 FANCIQ9NVI1 1328 aa13.37□□□□□ -0.27
CLIP1-203ENST00000361654 BECN2A8MW95 431 aa13.37□□□□□ -0.27
CLIP1-203ENST00000361654 GOLGA6L19H0YKK7 550 aa13.37□□□□□ -0.27
CLIP1-203ENST00000361654 TSPYL4Q9UJ04 414 aa13.37□□□□□ -0.27
CLIP1-203ENST00000361654 TXNDC2Q86VQ3 553 aa13.36□□□□□ -0.27
CLIP1-203ENST00000361654 FANCD2Q9BXW9 1451 aa13.36□□□□□ -0.27
CLIP1-203ENST00000361654 KIF6Q6ZMV9 814 aa13.36□□□□□ -0.27
CLIP1-203ENST00000361654 REC8O95072 547 aa13.36□□□□□ -0.27
CLIP1-203ENST00000361654 ERC2O15083 957 aa13.35□□□□□ -0.27
CLIP1-203ENST00000361654 ESCO1Q5FWF5 840 aa13.35□□□□□ -0.27
CLIP1-203ENST00000361654 GNAI1P63096 354 aa13.35□□□□□ -0.27
CLIP1-203ENST00000361654 RALYLQ86SE5 291 aaKnown RBP13.35□□□□□ -0.27
CLIP1-203ENST00000361654 NECTIN2Q92692 538 aa13.35□□□□□ -0.27
CLIP1-203ENST00000361654 BRMS1Q9HCU9 246 aa13.34□□□□□ -0.27
CLIP1-203ENST00000361654 NUTM2BA6NNL0 878 aaPredicted RBP13.34□□□□□ -0.27
CLIP1-203ENST00000361654 NUTM2EB1AL46 878 aaPredicted RBP13.34□□□□□ -0.27
CLIP1-203ENST00000361654 RIPK4P57078 832 aa13.34□□□□□ -0.27
CLIP1-203ENST00000361654 PLEKHO1Q53GL0 409 aaPredicted RBP13.34□□□□□ -0.27
CLIP1-203ENST00000361654 NUTM2AQ8IVF1 878 aaPredicted RBP13.34□□□□□ -0.27
CLIP1-203ENST00000361654 NEUROD6Q96NK8 337 aa13.34□□□□□ -0.27
CLIP1-203ENST00000361654 IPO9Q96P70 1041 aaKnown RBP13.33□□□□□ -0.28
CLIP1-203ENST00000361654 RBM42Q9BTD8 480 aaKnown RBP13.33□□□□□ -0.28
CLIP1-203ENST00000361654 TBC1D2BQ9UPU7 963 aa13.33□□□□□ -0.28
CLIP1-203ENST00000361654 GZF1Q9H116 711 aaPredicted RBP13.33□□□□□ -0.28
CLIP1-203ENST00000361654 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.33□□□□□ -0.281e-9■■■■■ 73.1
CLIP1-203ENST00000361654 SLC3A2P08195 630 aaKnown RBP13.33□□□□□ -0.28
CLIP1-203ENST00000361654 ANO2Q9NQ90 1003 aa13.33□□□□□ -0.28
CLIP1-203ENST00000361654 STRN4Q9NRL3 753 aa13.33□□□□□ -0.28
CLIP1-203ENST00000361654 DDX19BQ9UMR2 479 aa13.33□□□□□ -0.28
CLIP1-203ENST00000361654 XBP1P17861 261 aa13.33□□□□□ -0.28
CLIP1-203ENST00000361654 ODF2Q5BJF6 829 aa13.32□□□□□ -0.28
CLIP1-203ENST00000361654 ABTB2Q8N961 1025 aa13.32□□□□□ -0.28
CLIP1-203ENST00000361654 PRKCSHP14314 528 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-203ENST00000361654 TATP17735 454 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-203ENST00000361654 CT47A1Q5JQC4 288 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-203ENST00000361654 WASHC4Q2M389 1173 aa13.32□□□□□ -0.28
CLIP1-203ENST00000361654 GNL3LQ9NVN8 582 aaKnown RBP13.32□□□□□ -0.28
CLIP1-203ENST00000361654 TMEM132AQ24JP5 1023 aa13.31□□□□□ -0.28
CLIP1-203ENST00000361654 AIMP1Q12904 312 aaKnown RBP13.31□□□□□ -0.28
CLIP1-203ENST00000361654 FYB1O15117 783 aa13.31□□□□□ -0.28
CLIP1-203ENST00000361654 SMG6Q86US8 1419 aaKnown RBP13.31□□□□□ -0.28
CLIP1-203ENST00000361654 WDHD1O75717 1129 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-203ENST00000361654 PAF1Q8N7H5 531 aa13.31□□□□□ -0.28
CLIP1-203ENST00000361654 FOXD4L1Q9NU39 408 aa13.31□□□□□ -0.28
CLIP1-203ENST00000361654 MROH2BQ7Z745 1585 aa13.3□□□□□ -0.28
CLIP1-203ENST00000361654 SART3Q15020 963 aaKnown RBP13.3□□□□□ -0.28
CLIP1-203ENST00000361654 NUTM2GQ5VZR2 741 aa13.3□□□□□ -0.28
CLIP1-203ENST00000361654 GAS2L2Q8NHY3 880 aa13.3□□□□□ -0.28
CLIP1-203ENST00000361654 POGZQ7Z3K3 1410 aa13.29□□□□□ -0.28
CLIP1-203ENST00000361654 GOLGA6L3A6NEY3 463 aa13.29□□□□□ -0.28
CLIP1-203ENST00000361654 ANKLE2Q86XL3 938 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms