RNA–Protein interactions for RNA: ENST00000361309.5

CD47-202, Transcript of CD47 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD47, Length 1,285 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-202ENST00000361309 GCC2Q8IWJ2 1684 aa32.76■■■□□ 2.84
CD47-202ENST00000361309 ROBO1Q9Y6N7 1651 aa32.75■■■□□ 2.83
CD47-202ENST00000361309 NWD1Q149M9 1564 aa32.75■■■□□ 2.83
CD47-202ENST00000361309 BCANQ96GW7 911 aa32.75■■■□□ 2.83
CD47-202ENST00000361309 NKTRP30414 1462 aaKnown RBP32.73■■■□□ 2.83
CD47-202ENST00000361309 RGS17Q9UGC6 210 aaPredicted RBP32.71■■■□□ 2.83
CD47-202ENST00000361309 CHD2O14647 1828 aaKnown RBP32.7■■■□□ 2.83
CD47-202ENST00000361309 ZFYVE9O95405 1425 aa32.69■■■□□ 2.82
CD47-202ENST00000361309 TMEM131LA2VDJ0 1609 aa32.69■■■□□ 2.82
CD47-202ENST00000361309 UNC13BO14795 1591 aa32.67■■■□□ 2.82
CD47-202ENST00000361309 RIMS2Q9UQ26 1411 aa32.66■■■□□ 2.82
CD47-202ENST00000361309 PLEKHG1Q9ULL1 1385 aa32.65■■■□□ 2.82
CD47-202ENST00000361309 E9PCH4 1651 aa32.63■■■□□ 2.81
CD47-202ENST00000361309 MSH6P52701 1360 aa32.63■■■□□ 2.81
CD47-202ENST00000361309 PPP1R15AO75807 674 aaPredicted RBP32.63■■■□□ 2.81
CD47-202ENST00000361309 HDGFP51858 240 aaKnown RBP32.61■■■□□ 2.81
CD47-202ENST00000361309 PHLPP1O60346 1717 aa32.58■■■□□ 2.81
CD47-202ENST00000361309 CHGAP10645 457 aaKnown RBP32.58■■■□□ 2.81
CD47-202ENST00000361309 SLAIN2Q9P270 581 aa32.56■■■□□ 2.8
CD47-202ENST00000361309 IQGAP3Q86VI3 1631 aa32.55■■■□□ 2.8
CD47-202ENST00000361309 TBX22Q9Y458 520 aa32.54■■■□□ 2.8
CD47-202ENST00000361309 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.53■■■□□ 2.8
CD47-202ENST00000361309 ROCK1Q13464 1354 aa32.53■■■□□ 2.8
CD47-202ENST00000361309 NUTM2DQ5VT03 806 aaPredicted RBP32.51■■■□□ 2.79
CD47-202ENST00000361309 POTEAQ6S8J7 498 aa32.51■■■□□ 2.79
CD47-202ENST00000361309 ADAMTS13Q76LX8 1427 aa32.49■■■□□ 2.79
CD47-202ENST00000361309 DIP2AQ14689 1571 aa32.47■■■□□ 2.79
CD47-202ENST00000361309 NCOA3Q9Y6Q9 1424 aa32.46■■■□□ 2.79
CD47-202ENST00000361309 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.45■■■□□ 2.78
CD47-202ENST00000361309 C14orf37Q86TY3 774 aa32.44■■■□□ 2.78
CD47-202ENST00000361309 NUP155O75694 1391 aa32.44■■■□□ 2.78
CD47-202ENST00000361309 COL16A1Q07092 1604 aaPredicted RBP32.43■■■□□ 2.78
CD47-202ENST00000361309 JCADQ9P266 1359 aa32.43■■■□□ 2.78
CD47-202ENST00000361309 ITGAEP38570 1179 aa32.41■■■□□ 2.78
CD47-202ENST00000361309 PIK3R4Q99570 1358 aa32.41■■■□□ 2.78
CD47-202ENST00000361309 TRPM2O94759 1503 aa32.38■■■□□ 2.77
CD47-202ENST00000361309 C19orf44Q9H6X5 657 aa32.36■■■□□ 2.77
CD47-202ENST00000361309 SPHKAPQ2M3C7 1700 aa32.36■■■□□ 2.77
CD47-202ENST00000361309 CADPS2Q86UW7 1296 aa32.35■■■□□ 2.77
CD47-202ENST00000361309 ATF3P18847 181 aa32.34■■■□□ 2.77
CD47-202ENST00000361309 PTPRUQ92729 1446 aa32.34■■■□□ 2.77
CD47-202ENST00000361309 AMOTL2Q9Y2J4 779 aa32.33■■■□□ 2.77
CD47-202ENST00000361309 SETD1AO15047 1707 aaKnown RBP32.32■■■□□ 2.76
CD47-202ENST00000361309 AHDC1Q5TGY3 1603 aaPredicted RBP32.32■■■□□ 2.76
CD47-202ENST00000361309 NRXN3Q9Y4C0 1643 aa32.31■■■□□ 2.76
CD47-202ENST00000361309 PPARGC1BQ86YN6 1023 aaKnown RBP32.31■■■□□ 2.76
CD47-202ENST00000361309 LRP6O75581 1613 aa32.28■■■□□ 2.76
CD47-202ENST00000361309 SHPRHQ149N8 1683 aa32.27■■■□□ 2.76
CD47-202ENST00000361309 SPATA31A6Q5VVP1 1343 aa32.26■■■□□ 2.76
CD47-202ENST00000361309 XRN1Q8IZH2 1706 aaKnown RBP32.26■■■□□ 2.76
CD47-202ENST00000361309 SETBP1Q9Y6X0 1596 aa32.26■■■□□ 2.75
CD47-202ENST00000361309 ZNF326Q5BKZ1 582 aaKnown RBP32.23■■■□□ 2.75
CD47-202ENST00000361309 MEX3CQ5U5Q3 659 aaKnown RBP32.22■■■□□ 2.75
CD47-202ENST00000361309 BRINP3Q76B58 766 aa32.21■■■□□ 2.75
CD47-202ENST00000361309 DCCP43146 1447 aa32.19■■■□□ 2.74
CD47-202ENST00000361309 CLTCL1P53675 1640 aa32.18■■■□□ 2.74
CD47-202ENST00000361309 METP08581 1390 aa32.17■■■□□ 2.74
CD47-202ENST00000361309 KIF1BO60333 1816 aa32.16■■■□□ 2.74
CD47-202ENST00000361309 ASXL1Q8IXJ9 1541 aa32.15■■■□□ 2.74
CD47-202ENST00000361309 ZNF772Q68DY9 489 aaPredicted RBP32.14■■■□□ 2.74
CD47-202ENST00000361309 NEXMIFQ5QGS0 1516 aa32.14■■■□□ 2.74
CD47-202ENST00000361309 MST1RQ04912 1400 aa32.13■■■□□ 2.73
CD47-202ENST00000361309 NHSL1Q5SYE7 1610 aa32.12■■■□□ 2.73
CD47-202ENST00000361309 NALCNQ8IZF0 1738 aa32.09■■■□□ 2.73
CD47-202ENST00000361309 NUTM2BA6NNL0 878 aaPredicted RBP32.09■■■□□ 2.73
CD47-202ENST00000361309 NUTM2EB1AL46 878 aaPredicted RBP32.09■■■□□ 2.73
CD47-202ENST00000361309 NUTM2AQ8IVF1 878 aaPredicted RBP32.09■■■□□ 2.73
CD47-202ENST00000361309 TRIM52Q96A61 297 aa32.06■■■□□ 2.72
CD47-202ENST00000361309 SETD5Q9C0A6 1442 aa32.06■■■□□ 2.72
CD47-202ENST00000361309 ADGRL3Q9HAR2 1447 aa32.06■■■□□ 2.72
CD47-202ENST00000361309 NAIPQ13075 1403 aa32.05■■■□□ 2.72
CD47-202ENST00000361309 RRBP1Q9P2E9 1410 aaKnown RBP32.03■■■□□ 2.72
CD47-202ENST00000361309 DDX17Q92841 729 aaKnown RBP32■■■□□ 2.71
CD47-202ENST00000361309 LRRC59Q96AG4 307 aaKnown RBP32■■■□□ 2.71
CD47-202ENST00000361309 RXRBP28702 533 aa31.99■■■□□ 2.71
CD47-202ENST00000361309 AFF2P51816 1311 aa31.97■■■□□ 2.71
CD47-202ENST00000361309 UPF1Q92900 1129 aaKnown RBP eCLIP31.96■■■□□ 2.71
CD47-202ENST00000361309 PNPLA6Q8IY17 1366 aa31.94■■■□□ 2.7
CD47-202ENST00000361309 VGFO15240 615 aaPredicted RBP31.93■■■□□ 2.7
CD47-202ENST00000361309 C1orf167Q5SNV9 1468 aa31.92■■■□□ 2.7
CD47-202ENST00000361309 PTCH1Q13635 1447 aa31.92■■■□□ 2.7
CD47-202ENST00000361309 PPLO60437 1756 aa31.91■■■□□ 2.7
CD47-202ENST00000361309 CDK12Q9NYV4 1490 aaPredicted RBP31.91■■■□□ 2.7
CD47-202ENST00000361309 C8orf37Q96NL8 207 aa31.89■■■□□ 2.7
CD47-202ENST00000361309 ROBO2Q9HCK4 1378 aa31.89■■■□□ 2.7
CD47-202ENST00000361309 LAMC1P11047 1609 aa31.89■■■□□ 2.7
CD47-202ENST00000361309 HFM1A2PYH4 1435 aa31.87■■■□□ 2.69
CD47-202ENST00000361309 RPGRIP1LQ68CZ1 1315 aa31.86■■■□□ 2.69
CD47-202ENST00000361309 SLC4A1APQ9BWU0 796 aaKnown RBP31.86■■■□□ 2.69
CD47-202ENST00000361309 ORAI2Q96SN7 254 aa31.83■■■□□ 2.69
CD47-202ENST00000361309 QTRT2Q9H974 415 aaKnown RBP31.82■■■□□ 2.68
CD47-202ENST00000361309 PRAG1Q86YV5 1406 aa31.82■■■□□ 2.68
CD47-202ENST00000361309 SOS2Q07890 1332 aaPredicted RBP31.79■■■□□ 2.68
CD47-202ENST00000361309 ADAMTS2O95450 1211 aa31.79■■■□□ 2.68
CD47-202ENST00000361309 RBM6P78332 1123 aaKnown RBP31.78■■■□□ 2.68
CD47-202ENST00000361309 RGS12O14924 1447 aa31.77■■■□□ 2.68
CD47-202ENST00000361309 NGLY1Q96IV0 654 aa31.77■■■□□ 2.68
CD47-202ENST00000361309 FOXD1Q16676 465 aa31.75■■■□□ 2.67
CD47-202ENST00000361309 COL22A1Q8NFW1 1626 aaPredicted RBP31.71■■■□□ 2.67
CD47-202ENST00000361309 CDC42BPGQ6DT37 1551 aa31.7■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms