RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 ADGRF5Q8IZF2 1346 aa30.62■■■□□ 2.49
LDB1-201ENST00000361198 IFT172Q9UG01 1749 aa30.61■■■□□ 2.49
LDB1-201ENST00000361198 WASHC2CQ9Y4E1 1318 aa30.6■■■□□ 2.49
LDB1-201ENST00000361198 RICTORQ6R327 1708 aa30.6■■■□□ 2.49
LDB1-201ENST00000361198 DIP2CQ9Y2E4 1556 aa30.6■■■□□ 2.49
LDB1-201ENST00000361198 CFAP70Q5T0N1 1121 aa30.59■■■□□ 2.49
LDB1-201ENST00000361198 RBM19Q9Y4C8 960 aaKnown RBP30.59■■■□□ 2.49
LDB1-201ENST00000361198 ABCC3O15438 1527 aa30.59■■■□□ 2.49
LDB1-201ENST00000361198 RIMBP3CA6NJZ7 1639 aa30.58■■■□□ 2.49
LDB1-201ENST00000361198 RIMBP3BA6NNM3 1639 aa30.58■■■□□ 2.49
LDB1-201ENST00000361198 RIMBP3Q9UFD9 1639 aa30.58■■■□□ 2.49
LDB1-201ENST00000361198 ADGRB3O60242 1522 aa30.56■■■□□ 2.48
LDB1-201ENST00000361198 GLI2P10070 1586 aa30.56■■■□□ 2.48
LDB1-201ENST00000361198 LRPPRCP42704 1394 aaKnown RBP30.55■■■□□ 2.48
LDB1-201ENST00000361198 CHGAP10645 457 aaKnown RBP30.54■■■□□ 2.48
LDB1-201ENST00000361198 NLRP13Q86W25 1043 aa30.54■■■□□ 2.48
LDB1-201ENST00000361198 CC2D1BQ5T0F9 858 aaKnown RBP30.53■■■□□ 2.48
LDB1-201ENST00000361198 EIF3AQ14152 1382 aaKnown RBP30.53■■■□□ 2.48
LDB1-201ENST00000361198 NRXN1Q9ULB1 1477 aa30.53■■■□□ 2.48
LDB1-201ENST00000361198 YEATS2Q9ULM3 1422 aa30.51■■■□□ 2.48
LDB1-201ENST00000361198 CAMSAP1Q5T5Y3 1602 aa30.51■■■□□ 2.48
LDB1-201ENST00000361198 NOS1P29475 1434 aa30.51■■■□□ 2.47
LDB1-201ENST00000361198 IRX6P78412 446 aaPredicted RBP30.5■■■□□ 2.47
LDB1-201ENST00000361198 ANP32EQ9BTT0 268 aa30.5■■■□□ 2.47
LDB1-201ENST00000361198 CDCA8Q53HL2 280 aa30.49■■■□□ 2.47
LDB1-201ENST00000361198 SIGLEC1Q9BZZ2 1709 aa30.48■■■□□ 2.47
LDB1-201ENST00000361198 SENP3-EIF4A1A0A087X0R7 540 aa30.47■■■□□ 2.47
LDB1-201ENST00000361198 FAM69CQ0P6D2 419 aa30.47■■■□□ 2.47
LDB1-201ENST00000361198 PPLO60437 1756 aa30.45■■■□□ 2.46
LDB1-201ENST00000361198 PPP4R2Q9NY27 417 aa30.44■■■□□ 2.46
LDB1-201ENST00000361198 SYNMO15061 1565 aa30.43■■■□□ 2.46
LDB1-201ENST00000361198 SMG6Q86US8 1419 aaKnown RBP30.43■■■□□ 2.46
LDB1-201ENST00000361198 DIP2BQ9P265 1576 aa30.42■■■□□ 2.46
LDB1-201ENST00000361198 PIK3C2GO75747 1445 aa30.4■■■□□ 2.46
LDB1-201ENST00000361198 KNSTRNQ9Y448 316 aa30.39■■■□□ 2.46
LDB1-201ENST00000361198 MYOM1P52179 1685 aa30.39■■■□□ 2.46
LDB1-201ENST00000361198 ARHGAP31Q2M1Z3 1444 aa30.38■■■□□ 2.45
LDB1-201ENST00000361198 NUDCQ9Y266 331 aa30.38■■■□□ 2.45
LDB1-201ENST00000361198 PIK3C2BO00750 1634 aa30.38■■■□□ 2.45
LDB1-201ENST00000361198 RPGRIP1LQ68CZ1 1315 aa30.38■■■□□ 2.45
LDB1-201ENST00000361198 KDM5AP29375 1690 aaKnown RBP30.37■■■□□ 2.45
LDB1-201ENST00000361198 SETBP1Q9Y6X0 1596 aa30.37■■■□□ 2.45
LDB1-201ENST00000361198 ZC3H13Q5T200 1668 aaKnown RBP30.37■■■□□ 2.45
LDB1-201ENST00000361198 ERVK-7P63135 1459 aa30.37■■■□□ 2.45
LDB1-201ENST00000361198 SLC24A1O60721 1099 aa30.35■■■□□ 2.45
LDB1-201ENST00000361198 C14orf93Q9H972 538 aaKnown RBP30.35■■■□□ 2.45
LDB1-201ENST00000361198 TSPOAP1O95153 1857 aa30.35■■■□□ 2.45
LDB1-201ENST00000361198 AMER1Q5JTC6 1135 aaPredicted RBP30.35■■■□□ 2.45
LDB1-201ENST00000361198 ZMYM4Q5VZL5 1548 aa30.34■■■□□ 2.45
LDB1-201ENST00000361198 MYO3AQ8NEV4 1616 aa30.34■■■□□ 2.45
LDB1-201ENST00000361198 ADGRB1O14514 1584 aa30.3■■■□□ 2.44
LDB1-201ENST00000361198 IDI1Q13907 227 aa30.3■■■□□ 2.44
LDB1-201ENST00000361198 SBNO2Q9Y2G9 1366 aa30.3■■■□□ 2.44
LDB1-201ENST00000361198 TRAK1Q9UPV9 953 aa30.29■■■□□ 2.44
LDB1-201ENST00000361198 ASXL1Q8IXJ9 1541 aa30.28■■■□□ 2.44
LDB1-201ENST00000361198 CENPJQ9HC77 1338 aaPredicted RBP30.28■■■□□ 2.44
LDB1-201ENST00000361198 TMEM132EQ6IEE7 984 aa30.28■■■□□ 2.44
LDB1-201ENST00000361198 NUTM2DQ5VT03 806 aaPredicted RBP30.27■■■□□ 2.44
LDB1-201ENST00000361198 NEXMIFQ5QGS0 1516 aa30.26■■■□□ 2.44
LDB1-201ENST00000361198 PPP2R1AP30153 589 aa30.25■■■□□ 2.43
LDB1-201ENST00000361198 SLC52A1Q9NWF4 448 aa30.24■■■□□ 2.43
LDB1-201ENST00000361198 VGFO15240 615 aaPredicted RBP30.24■■■□□ 2.43
LDB1-201ENST00000361198 FANCIQ9NVI1 1328 aa30.23■■■□□ 2.43
LDB1-201ENST00000361198 NPC1L1Q9UHC9 1359 aa30.22■■■□□ 2.43
LDB1-201ENST00000361198 SALL2Q9Y467 1007 aaPredicted RBP30.22■■■□□ 2.43
LDB1-201ENST00000361198 RNF123Q5XPI4 1314 aa30.22■■■□□ 2.43
LDB1-201ENST00000361198 PREX1Q8TCU6 1659 aa30.22■■■□□ 2.43
LDB1-201ENST00000361198 INSRP06213 1382 aa30.21■■■□□ 2.43
LDB1-201ENST00000361198 BLMP54132 1417 aaPredicted RBP30.2■■■□□ 2.43
LDB1-201ENST00000361198 QRICH2Q9H0J4 1663 aa30.19■■■□□ 2.42
LDB1-201ENST00000361198 CARD14Q9BXL6 1004 aa30.17■■■□□ 2.42
LDB1-201ENST00000361198 MYO5BQ9ULV0 1848 aa30.17■■■□□ 2.42
LDB1-201ENST00000361198 FBXO31Q5XUX0 539 aaPredicted RBP30.16■■■□□ 2.42
LDB1-201ENST00000361198 B4GALNT3Q6L9W6 998 aa30.15■■■□□ 2.42
LDB1-201ENST00000361198 ADAMTS8Q9UP79 889 aa30.14■■■□□ 2.42
LDB1-201ENST00000361198 TMEM131LA2VDJ0 1609 aa30.13■■■□□ 2.41
LDB1-201ENST00000361198 REREQ9P2R6 1566 aa30.13■■■□□ 2.41
LDB1-201ENST00000361198 ZFYVE9O95405 1425 aa30.13■■■□□ 2.41
LDB1-201ENST00000361198 PDE3BQ13370 1112 aa30.12■■■□□ 2.41
LDB1-201ENST00000361198 AGLP35573 1532 aa30.11■■■□□ 2.41
LDB1-201ENST00000361198 MSH5O43196 834 aa30.11■■■□□ 2.41
LDB1-201ENST00000361198 ARHGEF28Q8N1W1 1705 aaKnown RBP30.09■■■□□ 2.41
LDB1-201ENST00000361198 SENP3Q9H4L4 574 aaPredicted RBP30.07■■■□□ 2.4
LDB1-201ENST00000361198 WDR43Q15061 677 aaKnown RBP eCLIP30.06■■■□□ 2.48e-9■■□□□ 13.6
LDB1-201ENST00000361198 CDCA7LQ96GN5 454 aa30.06■■■□□ 2.4
LDB1-201ENST00000361198 SLC12A5Q9H2X9 1139 aa30.06■■■□□ 2.4
LDB1-201ENST00000361198 KIF13AQ9H1H9 1805 aa30.06■■■□□ 2.4
LDB1-201ENST00000361198 PPP6R1Q9UPN7 881 aa30.05■■■□□ 2.4
LDB1-201ENST00000361198 CLTCQ00610 1675 aaKnown RBP30.02■■■□□ 2.4
LDB1-201ENST00000361198 NSD3Q9BZ95 1437 aa30.01■■■□□ 2.39
LDB1-201ENST00000361198 TULP4Q9NRJ4 1543 aa30■■■□□ 2.39
LDB1-201ENST00000361198 MLECQ14165 292 aa29.99■■■□□ 2.39
LDB1-201ENST00000361198 EVC2Q86UK5 1308 aa29.99■■■□□ 2.39
LDB1-201ENST00000361198 RCAN3Q9UKA8 241 aa29.99■■■□□ 2.39
LDB1-201ENST00000361198 STK26Q9P289 416 aa29.98■■■□□ 2.39
LDB1-201ENST00000361198 SAFB2Q14151 953 aaKnown RBP eCLIP29.97■■■□□ 2.39
LDB1-201ENST00000361198 STAG3Q9UJ98 1225 aa29.97■■■□□ 2.39
LDB1-201ENST00000361198 PUS7Q96PZ0 661 aaKnown RBP29.96■■■□□ 2.39
LDB1-201ENST00000361198 ARHGEF40Q8TER5 1519 aa29.95■■■□□ 2.38
LDB1-201ENST00000361198 RRP1P56182 461 aaKnown RBP29.94■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms