RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 FGD6Q6ZV73 1430 aa21.67■■□□□ 1.06
VPS29-201ENST00000360579 MSH6P52701 1360 aa21.66■■□□□ 1.06
VPS29-201ENST00000360579 POTEAQ6S8J7 498 aa21.65■■□□□ 1.06
VPS29-201ENST00000360579 BCANQ96GW7 911 aa21.65■■□□□ 1.06
VPS29-201ENST00000360579 CHIC2Q9UKJ5 165 aa21.65■■□□□ 1.06
VPS29-201ENST00000360579 NWD1Q149M9 1564 aa21.65■■□□□ 1.06
VPS29-201ENST00000360579 RBM33Q96EV2 1170 aaKnown RBP21.63■■□□□ 1.05
VPS29-201ENST00000360579 HDGFP51858 240 aaKnown RBP21.62■■□□□ 1.05
VPS29-201ENST00000360579 SLAIN2Q9P270 581 aa21.62■■□□□ 1.05
VPS29-201ENST00000360579 RPRD2Q5VT52 1461 aaKnown RBP21.62■■□□□ 1.05
VPS29-201ENST00000360579 JCADQ9P266 1359 aa21.6■■□□□ 1.05
VPS29-201ENST00000360579 PLEKHG1Q9ULL1 1385 aa21.59■■□□□ 1.05
VPS29-201ENST00000360579 PPP1R15AO75807 674 aaPredicted RBP21.58■■□□□ 1.05
VPS29-201ENST00000360579 ADGRL2O95490 1459 aa21.58■■□□□ 1.04
VPS29-201ENST00000360579 ZFYVE9O95405 1425 aa21.56■■□□□ 1.04
VPS29-201ENST00000360579 NCOA3Q9Y6Q9 1424 aa21.55■■□□□ 1.04
VPS29-201ENST00000360579 ANKRD50Q9ULJ7 1429 aa21.55■■□□□ 1.04
VPS29-201ENST00000360579 PHLPP1O60346 1717 aa21.54■■□□□ 1.04
VPS29-201ENST00000360579 RIMS2Q9UQ26 1411 aa21.54■■□□□ 1.04
VPS29-201ENST00000360579 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.53■■□□□ 1.04
VPS29-201ENST00000360579 TBX22Q9Y458 520 aa21.53■■□□□ 1.04
VPS29-201ENST00000360579 C14orf37Q86TY3 774 aa21.5■■□□□ 1.03
VPS29-201ENST00000360579 SPATA31A6Q5VVP1 1343 aa21.5■■□□□ 1.03
VPS29-201ENST00000360579 CHD2O14647 1828 aaKnown RBP21.5■■□□□ 1.03
VPS29-201ENST00000360579 FAM50AQ14320 339 aaKnown RBP21.48■■□□□ 1.03
VPS29-201ENST00000360579 CADPS2Q86UW7 1296 aa21.48■■□□□ 1.03
VPS29-201ENST00000360579 PIK3R4Q99570 1358 aa21.48■■□□□ 1.03
VPS29-201ENST00000360579 TMEM131LA2VDJ0 1609 aa21.47■■□□□ 1.03
VPS29-201ENST00000360579 COL16A1Q07092 1604 aaPredicted RBP21.47■■□□□ 1.03
VPS29-201ENST00000360579 ZNF772Q68DY9 489 aaPredicted RBP21.46■■□□□ 1.03
VPS29-201ENST00000360579 C19orf44Q9H6X5 657 aa21.46■■□□□ 1.03
VPS29-201ENST00000360579 GCC2Q8IWJ2 1684 aa21.46■■□□□ 1.03
VPS29-201ENST00000360579 DIP2AQ14689 1571 aa21.45■■□□□ 1.02
VPS29-201ENST00000360579 CHGAP10645 457 aaKnown RBP21.45■■□□□ 1.02
VPS29-201ENST00000360579 ATF3P18847 181 aa21.45■■□□□ 1.02
VPS29-201ENST00000360579 MEX3CQ5U5Q3 659 aaKnown RBP21.45■■□□□ 1.02
VPS29-201ENST00000360579 ADAMTS13Q76LX8 1427 aa21.43■■□□□ 1.02
VPS29-201ENST00000360579 AHDC1Q5TGY3 1603 aaPredicted RBP21.42■■□□□ 1.02
VPS29-201ENST00000360579 MYO5BQ9ULV0 1848 aa21.42■■□□□ 1.02
VPS29-201ENST00000360579 SETD1AO15047 1707 aaKnown RBP21.41■■□□□ 1.02
VPS29-201ENST00000360579 LRP6O75581 1613 aa21.41■■□□□ 1.02
VPS29-201ENST00000360579 UNC13BO14795 1591 aa21.4■■□□□ 1.02
VPS29-201ENST00000360579 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.38■■□□□ 1.01
VPS29-201ENST00000360579 NUTM2DQ5VT03 806 aaPredicted RBP21.37■■□□□ 1.01
VPS29-201ENST00000360579 TRPM2O94759 1503 aa21.37■■□□□ 1.01
VPS29-201ENST00000360579 SHPRHQ149N8 1683 aa21.37■■□□□ 1.01
VPS29-201ENST00000360579 AMOTL2Q9Y2J4 779 aa21.36■■□□□ 1.01
VPS29-201ENST00000360579 DCCP43146 1447 aa21.36■■□□□ 1.01
VPS29-201ENST00000360579 UPF1Q92900 1129 aaKnown RBP eCLIP21.35■■□□□ 1.01
VPS29-201ENST00000360579 ROCK1Q13464 1354 aa21.35■■□□□ 1.01
VPS29-201ENST00000360579 RXRBP28702 533 aa21.34■■□□□ 1.01
VPS29-201ENST00000360579 BRINP3Q76B58 766 aa21.34■■□□□ 1.01
VPS29-201ENST00000360579 TRIM52Q96A61 297 aa21.34■■□□□ 1.01
VPS29-201ENST00000360579 E9PCH4 1651 aa21.34■■□□□ 1.01
VPS29-201ENST00000360579 IQGAP3Q86VI3 1631 aa21.32■■□□□ 1
VPS29-201ENST00000360579 PTPRUQ92729 1446 aa21.3■■□□□ 1
VPS29-201ENST00000360579 NUP155O75694 1391 aa21.3■■□□□ 1
VPS29-201ENST00000360579 CDK12Q9NYV4 1490 aaPredicted RBP21.3■■□□□ 1
VPS29-201ENST00000360579 NUTM2BA6NNL0 878 aaPredicted RBP21.29■■□□□ 1
VPS29-201ENST00000360579 NUTM2EB1AL46 878 aaPredicted RBP21.29■■□□□ 1
VPS29-201ENST00000360579 NUTM2AQ8IVF1 878 aaPredicted RBP21.29■■□□□ 1
VPS29-201ENST00000360579 ASXL1Q8IXJ9 1541 aa21.28■■□□□ 1
VPS29-201ENST00000360579 SETD5Q9C0A6 1442 aa21.28■■□□□ 1
VPS29-201ENST00000360579 LRRC59Q96AG4 307 aaKnown RBP21.26■□□□□ 0.99
VPS29-201ENST00000360579 MST1RQ04912 1400 aa21.25■□□□□ 0.99
VPS29-201ENST00000360579 SETBP1Q9Y6X0 1596 aa21.25■□□□□ 0.99
VPS29-201ENST00000360579 AFF2P51816 1311 aa21.25■□□□□ 0.99
VPS29-201ENST00000360579 XRN1Q8IZH2 1706 aaKnown RBP21.24■□□□□ 0.99
VPS29-201ENST00000360579 ZNF326Q5BKZ1 582 aaKnown RBP21.22■□□□□ 0.99
VPS29-201ENST00000360579 NRXN3Q9Y4C0 1643 aa21.21■□□□□ 0.99
VPS29-201ENST00000360579 NHSL1Q5SYE7 1610 aa21.2■□□□□ 0.98
VPS29-201ENST00000360579 ADGRL3Q9HAR2 1447 aa21.2■□□□□ 0.98
VPS29-201ENST00000360579 METP08581 1390 aa21.19■□□□□ 0.98
VPS29-201ENST00000360579 RBM6P78332 1123 aaKnown RBP21.18■□□□□ 0.98
VPS29-201ENST00000360579 C8orf37Q96NL8 207 aa21.18■□□□□ 0.98
VPS29-201ENST00000360579 PNPLA6Q8IY17 1366 aa21.17■□□□□ 0.98
VPS29-201ENST00000360579 QTRT2Q9H974 415 aaKnown RBP21.16■□□□□ 0.98
VPS29-201ENST00000360579 SPHKAPQ2M3C7 1700 aa21.15■□□□□ 0.98
VPS29-201ENST00000360579 ITGAEP38570 1179 aa21.15■□□□□ 0.98
VPS29-201ENST00000360579 RGS12O14924 1447 aa21.13■□□□□ 0.97
VPS29-201ENST00000360579 NGLY1Q96IV0 654 aa21.13■□□□□ 0.97
VPS29-201ENST00000360579 DDX17Q92841 729 aaKnown RBP21.11■□□□□ 0.97
VPS29-201ENST00000360579 NEXMIFQ5QGS0 1516 aa21.1■□□□□ 0.97
VPS29-201ENST00000360579 C1orf167Q5SNV9 1468 aa21.1■□□□□ 0.97
VPS29-201ENST00000360579 PTCH1Q13635 1447 aa21.09■□□□□ 0.97
VPS29-201ENST00000360579 NALCNQ8IZF0 1738 aa21.09■□□□□ 0.97
VPS29-201ENST00000360579 ADAMTS2O95450 1211 aa21.08■□□□□ 0.97
VPS29-201ENST00000360579 SRCAPQ6ZRS2 3230 aa21.08■□□□□ 0.96
VPS29-201ENST00000360579 SOS2Q07890 1332 aaPredicted RBP21.06■□□□□ 0.96
VPS29-201ENST00000360579 VGFO15240 615 aaPredicted RBP21.06■□□□□ 0.96
VPS29-201ENST00000360579 LAMC1P11047 1609 aa21.06■□□□□ 0.96
VPS29-201ENST00000360579 CLTCL1P53675 1640 aa21.06■□□□□ 0.96
VPS29-201ENST00000360579 ATAD2Q6PL18 1390 aa21.06■□□□□ 0.96
VPS29-201ENST00000360579 USP21Q9UK80 565 aa21.04■□□□□ 0.96
VPS29-201ENST00000360579 TRPC5Q9UL62 973 aaPredicted RBP21.04■□□□□ 0.96
VPS29-201ENST00000360579 PRAG1Q86YV5 1406 aa21.03■□□□□ 0.96
VPS29-201ENST00000360579 ROBO2Q9HCK4 1378 aa21.02■□□□□ 0.96
VPS29-201ENST00000360579 ORAI2Q96SN7 254 aa21.02■□□□□ 0.96
VPS29-201ENST00000360579 FNBP4Q8N3X1 1017 aaPredicted RBP21.01■□□□□ 0.95
VPS29-201ENST00000360579 HFM1A2PYH4 1435 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms