RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 RIMBP3Q9UFD9 1639 aa29.91■■■□□ 2.38
NKX2-1-201ENST00000354822 FRMPD1Q5SYB0 1578 aa29.91■■■□□ 2.38
NKX2-1-201ENST00000354822 CYB5RLQ6IPT4 315 aa29.9■■■□□ 2.38
NKX2-1-201ENST00000354822 ABCA6Q8N139 1617 aa29.89■■■□□ 2.38
NKX2-1-201ENST00000354822 GLI2P10070 1586 aa29.89■■■□□ 2.38
NKX2-1-201ENST00000354822 KIAA1210Q9ULL0 1709 aa29.89■■■□□ 2.38
NKX2-1-201ENST00000354822 PPRC1Q5VV67 1664 aaKnown RBP29.89■■■□□ 2.38
NKX2-1-201ENST00000354822 SLC24A1O60721 1099 aa29.88■■■□□ 2.37
NKX2-1-201ENST00000354822 ZMYM4Q5VZL5 1548 aa29.87■■■□□ 2.37
NKX2-1-201ENST00000354822 EIF3AQ14152 1382 aaKnown RBP29.86■■■□□ 2.37
NKX2-1-201ENST00000354822 PDE3BQ13370 1112 aa29.84■■■□□ 2.37
NKX2-1-201ENST00000354822 CC2D1BQ5T0F9 858 aaKnown RBP29.84■■■□□ 2.37
NKX2-1-201ENST00000354822 MYOM2P54296 1465 aa29.83■■■□□ 2.37
NKX2-1-201ENST00000354822 KIF1BO60333 1816 aa29.82■■■□□ 2.36
NKX2-1-201ENST00000354822 RICTORQ6R327 1708 aa29.82■■■□□ 2.36
NKX2-1-201ENST00000354822 RAPGEF3O95398 923 aa29.8■■■□□ 2.36
NKX2-1-201ENST00000354822 KNSTRNQ9Y448 316 aa29.79■■■□□ 2.36
NKX2-1-201ENST00000354822 DIP2CQ9Y2E4 1556 aa29.78■■■□□ 2.36
NKX2-1-201ENST00000354822 B4GALNT3Q6L9W6 998 aa29.78■■■□□ 2.36
NKX2-1-201ENST00000354822 SYNMO15061 1565 aa29.77■■■□□ 2.36
NKX2-1-201ENST00000354822 UGGT1Q9NYU2 1555 aa29.77■■■□□ 2.36
NKX2-1-201ENST00000354822 GGT6Q6P531 493 aa29.74■■■□□ 2.35
NKX2-1-201ENST00000354822 ABCC3O15438 1527 aa29.73■■■□□ 2.35
NKX2-1-201ENST00000354822 BLMP54132 1417 aaPredicted RBP29.72■■■□□ 2.35
NKX2-1-201ENST00000354822 IFT172Q9UG01 1749 aa29.71■■■□□ 2.35
NKX2-1-201ENST00000354822 NPATQ14207 1427 aa29.71■■■□□ 2.35
NKX2-1-201ENST00000354822 DIP2BQ9P265 1576 aa29.71■■■□□ 2.35
NKX2-1-201ENST00000354822 NPC1L1Q9UHC9 1359 aa29.7■■■□□ 2.35
NKX2-1-201ENST00000354822 MROH2AA6NES4 1674 aa29.7■■■□□ 2.35
NKX2-1-201ENST00000354822 NRXN1Q9ULB1 1477 aa29.69■■■□□ 2.34
NKX2-1-201ENST00000354822 SENP3-EIF4A1A0A087X0R7 540 aa29.69■■■□□ 2.34
NKX2-1-201ENST00000354822 AMER1Q5JTC6 1135 aaPredicted RBP29.69■■■□□ 2.34
NKX2-1-201ENST00000354822 CFAP70Q5T0N1 1121 aa29.69■■■□□ 2.34
NKX2-1-201ENST00000354822 ADGRF5Q8IZF2 1346 aa29.68■■■□□ 2.34
NKX2-1-201ENST00000354822 CAMSAP1Q5T5Y3 1602 aa29.67■■■□□ 2.34
NKX2-1-201ENST00000354822 ADGRB3O60242 1522 aa29.67■■■□□ 2.34
NKX2-1-201ENST00000354822 ASXL1Q8IXJ9 1541 aa29.66■■■□□ 2.34
NKX2-1-201ENST00000354822 FAM69CQ0P6D2 419 aa29.65■■■□□ 2.34
NKX2-1-201ENST00000354822 KDM5AP29375 1690 aaKnown RBP29.64■■■□□ 2.34
NKX2-1-201ENST00000354822 PPP2R1AP30153 589 aa29.64■■■□□ 2.34
NKX2-1-201ENST00000354822 RCAN3Q9UKA8 241 aa29.64■■■□□ 2.34
NKX2-1-201ENST00000354822 CCDC136Q96JN2 1154 aa29.63■■■□□ 2.33
NKX2-1-201ENST00000354822 CFAP65Q6ZU64 1925 aaKnown RBP29.62■■■□□ 2.33
NKX2-1-201ENST00000354822 FANCIQ9NVI1 1328 aa29.62■■■□□ 2.33
NKX2-1-201ENST00000354822 YEATS2Q9ULM3 1422 aa29.62■■■□□ 2.33
NKX2-1-201ENST00000354822 ZC3H13Q5T200 1668 aaKnown RBP29.62■■■□□ 2.33
NKX2-1-201ENST00000354822 RRP1P56182 461 aaKnown RBP29.62■■■□□ 2.33
NKX2-1-201ENST00000354822 SALL2Q9Y467 1007 aaPredicted RBP29.6■■■□□ 2.33
NKX2-1-201ENST00000354822 SBNO2Q9Y2G9 1366 aa29.6■■■□□ 2.33
NKX2-1-201ENST00000354822 RPGRIP1LQ68CZ1 1315 aa29.6■■■□□ 2.33
NKX2-1-201ENST00000354822 MYOM1P52179 1685 aa29.6■■■□□ 2.33
NKX2-1-201ENST00000354822 SETBP1Q9Y6X0 1596 aa29.59■■■□□ 2.33
NKX2-1-201ENST00000354822 PIK3C2GO75747 1445 aa29.58■■■□□ 2.33
NKX2-1-201ENST00000354822 NOS1P29475 1434 aa29.58■■■□□ 2.33
NKX2-1-201ENST00000354822 ANP32EQ9BTT0 268 aa29.57■■■□□ 2.32
NKX2-1-201ENST00000354822 ERVK-7P63135 1459 aa29.57■■■□□ 2.32
NKX2-1-201ENST00000354822 WDR43Q15061 677 aaKnown RBP eCLIP29.56■■■□□ 2.32
NKX2-1-201ENST00000354822 SIGLEC1Q9BZZ2 1709 aa29.56■■■□□ 2.32
NKX2-1-201ENST00000354822 ADAMTS8Q9UP79 889 aa29.56■■■□□ 2.32
NKX2-1-201ENST00000354822 MYO3AQ8NEV4 1616 aa29.56■■■□□ 2.32
NKX2-1-201ENST00000354822 ARHGAP31Q2M1Z3 1444 aa29.56■■■□□ 2.32
NKX2-1-201ENST00000354822 PPLO60437 1756 aa29.55■■■□□ 2.32
NKX2-1-201ENST00000354822 TSPOAP1O95153 1857 aa29.55■■■□□ 2.32
NKX2-1-201ENST00000354822 CHGAP10645 457 aaKnown RBP29.54■■■□□ 2.32
NKX2-1-201ENST00000354822 C14orf93Q9H972 538 aaKnown RBP29.53■■■□□ 2.32
NKX2-1-201ENST00000354822 PIK3C2BO00750 1634 aa29.52■■■□□ 2.32
NKX2-1-201ENST00000354822 CDCA7LQ96GN5 454 aa29.51■■■□□ 2.31
NKX2-1-201ENST00000354822 CENPJQ9HC77 1338 aaPredicted RBP29.5■■■□□ 2.31
NKX2-1-201ENST00000354822 REREQ9P2R6 1566 aa29.44■■■□□ 2.3
NKX2-1-201ENST00000354822 VGFO15240 615 aaPredicted RBP29.4■■■□□ 2.3
NKX2-1-201ENST00000354822 CARD14Q9BXL6 1004 aa29.4■■■□□ 2.3
NKX2-1-201ENST00000354822 ADGRB1O14514 1584 aa29.4■■■□□ 2.3
NKX2-1-201ENST00000354822 EXOC6Q8TAG9 804 aa29.4■■■□□ 2.3
NKX2-1-201ENST00000354822 PREX1Q8TCU6 1659 aa29.39■■■□□ 2.3
NKX2-1-201ENST00000354822 TRAK1Q9UPV9 953 aa29.39■■■□□ 2.29
NKX2-1-201ENST00000354822 AGLP35573 1532 aa29.38■■■□□ 2.29
NKX2-1-201ENST00000354822 PUS7Q96PZ0 661 aaKnown RBP29.37■■■□□ 2.29
NKX2-1-201ENST00000354822 SLC52A1Q9NWF4 448 aa29.37■■■□□ 2.29
NKX2-1-201ENST00000354822 KIF13AQ9H1H9 1805 aa29.37■■■□□ 2.29
NKX2-1-201ENST00000354822 ZNF521Q96K83 1311 aa29.37■■■□□ 2.29
NKX2-1-201ENST00000354822 NEXMIFQ5QGS0 1516 aa29.36■■■□□ 2.29
NKX2-1-201ENST00000354822 NGEFQ8N5V2 710 aa29.35■■■□□ 2.29
NKX2-1-201ENST00000354822 GOLGA2Q08379 1002 aa29.35■■■□□ 2.29
NKX2-1-201ENST00000354822 PLEKHH1Q9ULM0 1364 aa29.34■■■□□ 2.29
NKX2-1-201ENST00000354822 MSH5O43196 834 aa29.33■■■□□ 2.29
NKX2-1-201ENST00000354822 IDI1Q13907 227 aa29.33■■■□□ 2.29
NKX2-1-201ENST00000354822 QRICH2Q9H0J4 1663 aa29.33■■■□□ 2.29
NKX2-1-201ENST00000354822 PPP6R1Q9UPN7 881 aa29.32■■■□□ 2.28
NKX2-1-201ENST00000354822 DUSP27Q5VZP5 1158 aa29.3■■■□□ 2.28
NKX2-1-201ENST00000354822 TMEM132EQ6IEE7 984 aa29.3■■■□□ 2.28
NKX2-1-201ENST00000354822 ZFYVE9O95405 1425 aa29.29■■■□□ 2.28
NKX2-1-201ENST00000354822 POLR3AO14802 1390 aaPredicted RBP29.29■■■□□ 2.28
NKX2-1-201ENST00000354822 TMEM131LA2VDJ0 1609 aa29.27■■■□□ 2.28
NKX2-1-201ENST00000354822 MYO5BQ9ULV0 1848 aa29.26■■■□□ 2.27
NKX2-1-201ENST00000354822 SLFN5Q08AF3 891 aa29.25■■■□□ 2.27
NKX2-1-201ENST00000354822 NSD3Q9BZ95 1437 aa29.25■■■□□ 2.27
NKX2-1-201ENST00000354822 EVC2Q86UK5 1308 aa29.25■■■□□ 2.27
NKX2-1-201ENST00000354822 SLC12A5Q9H2X9 1139 aa29.24■■■□□ 2.27
NKX2-1-201ENST00000354822 TRMT2AQ8IZ69 625 aaKnown RBP29.23■■■□□ 2.27
NKX2-1-201ENST00000354822 ARHGEF40Q8TER5 1519 aa29.23■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 170 ms