RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 HDGFP51858 240 aaKnown RBP32.07■■■□□ 2.72
SDC3-202ENST00000339394 NUTM2DQ5VT03 806 aaPredicted RBP32.07■■■□□ 2.72
SDC3-202ENST00000339394 TXNDC2Q86VQ3 553 aa32.07■■■□□ 2.72
SDC3-202ENST00000339394 ANKLE2Q86XL3 938 aa32.06■■■□□ 2.72
SDC3-202ENST00000339394 L3MBTL2Q969R5 705 aa32.06■■■□□ 2.72
SDC3-202ENST00000339394 EID1Q9Y6B2 187 aa32.06■■■□□ 2.72
SDC3-202ENST00000339394 MYO5BQ9ULV0 1848 aa32.06■■■□□ 2.72
SDC3-202ENST00000339394 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.04■■■□□ 2.72
SDC3-202ENST00000339394 DCAF11Q8TEB1 546 aa32.04■■■□□ 2.72
SDC3-202ENST00000339394 TONSLQ96HA7 1378 aa32.02■■■□□ 2.72
SDC3-202ENST00000339394 NEXMIFQ5QGS0 1516 aa32.01■■■□□ 2.72
SDC3-202ENST00000339394 VGFO15240 615 aaPredicted RBP32■■■□□ 2.71
SDC3-202ENST00000339394 PPP1R15AO75807 674 aaPredicted RBP32■■■□□ 2.71
SDC3-202ENST00000339394 NCKAP5LQ9HCH0 1330 aa32■■■□□ 2.71
SDC3-202ENST00000339394 KDM2AQ9Y2K7 1162 aa31.99■■■□□ 2.71
SDC3-202ENST00000339394 SCAF11Q99590 1463 aaKnown RBP31.97■■■□□ 2.71
SDC3-202ENST00000339394 TIMELESSQ9UNS1 1208 aa31.96■■■□□ 2.71
SDC3-202ENST00000339394 STAC3Q96MF2 364 aa31.95■■■□□ 2.71
SDC3-202ENST00000339394 ADGRF5Q8IZF2 1346 aa31.95■■■□□ 2.7
SDC3-202ENST00000339394 SENP3Q9H4L4 574 aaPredicted RBP31.93■■■□□ 2.7
SDC3-202ENST00000339394 PPLO60437 1756 aa31.9■■■□□ 2.7
SDC3-202ENST00000339394 PLEKHG1Q9ULL1 1385 aa31.9■■■□□ 2.7
SDC3-202ENST00000339394 MYOM2P54296 1465 aa31.9■■■□□ 2.7
SDC3-202ENST00000339394 BCANQ96GW7 911 aa31.89■■■□□ 2.7
SDC3-202ENST00000339394 MED14O60244 1454 aa31.88■■■□□ 2.69
SDC3-202ENST00000339394 IFT172Q9UG01 1749 aa31.87■■■□□ 2.69
SDC3-202ENST00000339394 NPHP4O75161 1426 aaPredicted RBP31.86■■■□□ 2.69
SDC3-202ENST00000339394 NRXN1Q9ULB1 1477 aa31.85■■■□□ 2.69
SDC3-202ENST00000339394 STRCQ7RTU9 1775 aa31.84■■■□□ 2.69
SDC3-202ENST00000339394 PIK3C2GO75747 1445 aa31.83■■■□□ 2.69
SDC3-202ENST00000339394 SLC26A8Q96RN1 970 aa31.81■■■□□ 2.68
SDC3-202ENST00000339394 POLR1AO95602 1720 aaPredicted RBP31.81■■■□□ 2.68
SDC3-202ENST00000339394 PRAG1Q86YV5 1406 aa31.8■■■□□ 2.68
SDC3-202ENST00000339394 DMRT2Q9Y5R5 561 aa31.79■■■□□ 2.68
SDC3-202ENST00000339394 ADAMTS13Q76LX8 1427 aa31.78■■■□□ 2.68
SDC3-202ENST00000339394 NBPF8Q3BBV2 869 aa31.77■■■□□ 2.68
SDC3-202ENST00000339394 SETBP1Q9Y6X0 1596 aa31.77■■■□□ 2.68
SDC3-202ENST00000339394 CFAP70Q5T0N1 1121 aa31.77■■■□□ 2.68
SDC3-202ENST00000339394 C14orf93Q9H972 538 aaKnown RBP31.77■■■□□ 2.68
SDC3-202ENST00000339394 TBX22Q9Y458 520 aa31.76■■■□□ 2.67
SDC3-202ENST00000339394 IQGAP1P46940 1657 aa31.74■■■□□ 2.67
SDC3-202ENST00000339394 NRXN3Q9Y4C0 1643 aa31.73■■■□□ 2.67
SDC3-202ENST00000339394 ALKQ9UM73 1620 aa31.7■■■□□ 2.67
SDC3-202ENST00000339394 METP08581 1390 aa31.68■■■□□ 2.66
SDC3-202ENST00000339394 NBPF1Q3BBV0 1214 aa31.66■■■□□ 2.66
SDC3-202ENST00000339394 TMEM132EQ6IEE7 984 aa31.66■■■□□ 2.66
SDC3-202ENST00000339394 DIP2AQ14689 1571 aa31.65■■■□□ 2.66
SDC3-202ENST00000339394 PIK3R4Q99570 1358 aa31.6■■■□□ 2.65
SDC3-202ENST00000339394 ZEB1P37275 1124 aaPredicted RBP31.59■■■□□ 2.65
SDC3-202ENST00000339394 SETD1AO15047 1707 aaKnown RBP31.58■■■□□ 2.65
SDC3-202ENST00000339394 LAMC1P11047 1609 aa31.58■■■□□ 2.65
SDC3-202ENST00000339394 ROCK2O75116 1388 aaKnown RBP31.58■■■□□ 2.65
SDC3-202ENST00000339394 ASXL1Q8IXJ9 1541 aa31.57■■■□□ 2.64
SDC3-202ENST00000339394 ADGRB1O14514 1584 aa31.57■■■□□ 2.64
SDC3-202ENST00000339394 PTPRUQ92729 1446 aa31.57■■■□□ 2.64
SDC3-202ENST00000339394 RALGAPBQ86X10 1494 aa31.56■■■□□ 2.64
SDC3-202ENST00000339394 KCNA6P17658 529 aa31.56■■■□□ 2.64
SDC3-202ENST00000339394 AMOTL2Q9Y2J4 779 aa31.56■■■□□ 2.64
SDC3-202ENST00000339394 TRPM1Q7Z4N2 1603 aa31.55■■■□□ 2.64
SDC3-202ENST00000339394 KIAA1210Q9ULL0 1709 aa31.54■■■□□ 2.64
SDC3-202ENST00000339394 ZNF335Q9H4Z2 1342 aaPredicted RBP31.54■■■□□ 2.64
SDC3-202ENST00000339394 STK26Q9P289 416 aa31.54■■■□□ 2.64
SDC3-202ENST00000339394 YTHDC2Q9H6S0 1430 aaKnown RBP31.53■■■□□ 2.64
SDC3-202ENST00000339394 GPRASP1Q5JY77 1395 aa31.52■■■□□ 2.64
SDC3-202ENST00000339394 LRPPRCP42704 1394 aaKnown RBP31.51■■■□□ 2.64
SDC3-202ENST00000339394 CARD11Q9BXL7 1154 aa31.51■■■□□ 2.63
SDC3-202ENST00000339394 ABCC11Q96J66 1382 aa31.49■■■□□ 2.63
SDC3-202ENST00000339394 TRAK1Q9UPV9 953 aa31.48■■■□□ 2.63
SDC3-202ENST00000339394 TECPR2O15040 1411 aa31.44■■■□□ 2.62
SDC3-202ENST00000339394 CHD2O14647 1828 aaKnown RBP31.43■■■□□ 2.62
SDC3-202ENST00000339394 NWD1Q149M9 1564 aa31.42■■■□□ 2.62
SDC3-202ENST00000339394 ROBO2Q9HCK4 1378 aa31.42■■■□□ 2.62
SDC3-202ENST00000339394 XRN1Q8IZH2 1706 aaKnown RBP31.4■■■□□ 2.62
SDC3-202ENST00000339394 SIRT1Q96EB6 747 aa31.39■■■□□ 2.62
SDC3-202ENST00000339394 PTCH1Q13635 1447 aa31.39■■■□□ 2.62
SDC3-202ENST00000339394 WAPLQ7Z5K2 1190 aa31.39■■■□□ 2.61
SDC3-202ENST00000339394 PROSER2Q86WR7 435 aaPredicted RBP31.39■■■□□ 2.61
SDC3-202ENST00000339394 NKTRP30414 1462 aaKnown RBP31.38■■■□□ 2.61
SDC3-202ENST00000339394 PRAM1Q96QH2 718 aa31.38■■■□□ 2.61
SDC3-202ENST00000339394 STRCP1A6NGW2 1772 aa31.37■■■□□ 2.61
SDC3-202ENST00000339394 RBM33Q96EV2 1170 aaKnown RBP31.37■■■□□ 2.61
SDC3-202ENST00000339394 FAM135BQ49AJ0 1406 aa31.35■■■□□ 2.61
SDC3-202ENST00000339394 DLC1Q96QB1 1528 aa31.34■■■□□ 2.61
SDC3-202ENST00000339394 PLEKHH1Q9ULM0 1364 aa31.34■■■□□ 2.61
SDC3-202ENST00000339394 POGKQ9P215 609 aa31.34■■■□□ 2.61
SDC3-202ENST00000339394 CPS1P31327 1500 aa31.34■■■□□ 2.61
SDC3-202ENST00000339394 LTBP4Q8N2S1 1624 aa31.33■■■□□ 2.61
SDC3-202ENST00000339394 SAFB2Q14151 953 aaKnown RBP eCLIP31.32■■■□□ 2.6
SDC3-202ENST00000339394 USP47Q96K76 1375 aa31.32■■■□□ 2.6
SDC3-202ENST00000339394 KNDC1Q76NI1 1749 aa31.31■■■□□ 2.6
SDC3-202ENST00000339394 TMEM94Q12767 1356 aa31.31■■■□□ 2.6
SDC3-202ENST00000339394 EIF3AQ14152 1382 aaKnown RBP31.31■■■□□ 2.6
SDC3-202ENST00000339394 LRRC7Q96NW7 1537 aa31.3■■■□□ 2.6
SDC3-202ENST00000339394 CENPJQ9HC77 1338 aaPredicted RBP31.29■■■□□ 2.6
SDC3-202ENST00000339394 ST20-MTHFSA0A0A6YYL1 179 aa31.27■■■□□ 2.6
SDC3-202ENST00000339394 EIF4G2P78344 907 aaKnown RBP eCLIP31.27■■■□□ 2.66e-7■■■■■ 33.9
SDC3-202ENST00000339394 ARHGEF28Q8N1W1 1705 aaKnown RBP31.25■■■□□ 2.59
SDC3-202ENST00000339394 C14orf37Q86TY3 774 aa31.24■■■□□ 2.59
SDC3-202ENST00000339394 NCOA3Q9Y6Q9 1424 aa31.24■■■□□ 2.59
SDC3-202ENST00000339394 HSPA5P11021 654 aaKnown RBP31.22■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms