RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 LMTK3Q96Q04 1460 aa23.84■■□□□ 1.41
SHOX-201ENST00000334060 SETD1BQ9UPS6 1966 aaKnown RBP23.84■■□□□ 1.41
SHOX-201ENST00000334060 ZFYVE9O95405 1425 aa23.83■■□□□ 1.41
SHOX-201ENST00000334060 RIMS2Q9UQ26 1411 aa23.82■■□□□ 1.4
SHOX-201ENST00000334060 TMEM2Q9UHN6 1383 aa23.81■■□□□ 1.4
SHOX-201ENST00000334060 PPP1R15AO75807 674 aaPredicted RBP23.81■■□□□ 1.4
SHOX-201ENST00000334060 NEURL4Q96JN8 1562 aa23.8■■□□□ 1.4
SHOX-201ENST00000334060 KDM5AP29375 1690 aaKnown RBP23.77■■□□□ 1.4
SHOX-201ENST00000334060 ARHGAP23Q9P227 1491 aa23.77■■□□□ 1.4
SHOX-201ENST00000334060 SLIT1O75093 1534 aa23.75■■□□□ 1.39
SHOX-201ENST00000334060 PRAG1Q86YV5 1406 aa23.75■■□□□ 1.39
SHOX-201ENST00000334060 NCKAP5LQ9HCH0 1330 aa23.74■■□□□ 1.39
SHOX-201ENST00000334060 THEMISQ8N1K5 641 aaPredicted RBP23.74■■□□□ 1.39
SHOX-201ENST00000334060 NBPF1Q3BBV0 1214 aa23.73■■□□□ 1.39
SHOX-201ENST00000334060 TXNDC2Q86VQ3 553 aa23.73■■□□□ 1.39
SHOX-201ENST00000334060 MYOM2P54296 1465 aa23.72■■□□□ 1.39
SHOX-201ENST00000334060 CFAP70Q5T0N1 1121 aa23.72■■□□□ 1.39
SHOX-201ENST00000334060 NRXN1Q9ULB1 1477 aa23.72■■□□□ 1.39
SHOX-201ENST00000334060 NRXN3Q9Y4C0 1643 aa23.71■■□□□ 1.39
SHOX-201ENST00000334060 PIK3C2GO75747 1445 aa23.71■■□□□ 1.39
SHOX-201ENST00000334060 IQGAP1P46940 1657 aa23.7■■□□□ 1.38
SHOX-201ENST00000334060 RPGRIP1LQ68CZ1 1315 aa23.69■■□□□ 1.38
SHOX-201ENST00000334060 TIMELESSQ9UNS1 1208 aa23.69■■□□□ 1.38
SHOX-201ENST00000334060 SCAF11Q99590 1463 aaKnown RBP23.68■■□□□ 1.38
SHOX-201ENST00000334060 SLC26A8Q96RN1 970 aa23.67■■□□□ 1.38
SHOX-201ENST00000334060 TMEM132EQ6IEE7 984 aa23.66■■□□□ 1.38
SHOX-201ENST00000334060 TRPM1Q7Z4N2 1603 aa23.66■■□□□ 1.38
SHOX-201ENST00000334060 ASXL1Q8IXJ9 1541 aa23.66■■□□□ 1.38
SHOX-201ENST00000334060 VGFO15240 615 aaPredicted RBP23.65■■□□□ 1.38
SHOX-201ENST00000334060 ADAMTS13Q76LX8 1427 aa23.64■■□□□ 1.38
SHOX-201ENST00000334060 STRCQ7RTU9 1775 aa23.64■■□□□ 1.37
SHOX-201ENST00000334060 ZEB1P37275 1124 aaPredicted RBP23.62■■□□□ 1.37
SHOX-201ENST00000334060 BCANQ96GW7 911 aa23.62■■□□□ 1.37
SHOX-201ENST00000334060 SETD1AO15047 1707 aaKnown RBP23.62■■□□□ 1.37
SHOX-201ENST00000334060 ANKLE2Q86XL3 938 aa23.61■■□□□ 1.37
SHOX-201ENST00000334060 HIRIP3Q9BW71 556 aaPredicted RBP23.61■■□□□ 1.37
SHOX-201ENST00000334060 EID1Q9Y6B2 187 aa23.61■■□□□ 1.37
SHOX-201ENST00000334060 ALKQ9UM73 1620 aa23.61■■□□□ 1.37
SHOX-201ENST00000334060 POLR1AO95602 1720 aaPredicted RBP23.61■■□□□ 1.37
SHOX-201ENST00000334060 METP08581 1390 aa23.61■■□□□ 1.37
SHOX-201ENST00000334060 PLEKHG1Q9ULL1 1385 aa23.6■■□□□ 1.37
SHOX-201ENST00000334060 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.6■■□□□ 1.37
SHOX-201ENST00000334060 C14orf93Q9H972 538 aaKnown RBP23.59■■□□□ 1.37
SHOX-201ENST00000334060 RALGAPBQ86X10 1494 aa23.59■■□□□ 1.37
SHOX-201ENST00000334060 SETBP1Q9Y6X0 1596 aa23.59■■□□□ 1.37
SHOX-201ENST00000334060 ADGRB1O14514 1584 aa23.58■■□□□ 1.37
SHOX-201ENST00000334060 ROCK2O75116 1388 aaKnown RBP23.57■■□□□ 1.36
SHOX-201ENST00000334060 NPHP4O75161 1426 aaPredicted RBP23.57■■□□□ 1.36
SHOX-201ENST00000334060 AEBP2Q6ZN18 517 aaPredicted RBP23.56■■□□□ 1.36
SHOX-201ENST00000334060 MED14O60244 1454 aa23.55■■□□□ 1.36
SHOX-201ENST00000334060 PTPRUQ92729 1446 aa23.54■■□□□ 1.36
SHOX-201ENST00000334060 PELP1Q8IZL8 1130 aaKnown RBP23.53■■□□□ 1.36
SHOX-201ENST00000334060 STK26Q9P289 416 aa23.53■■□□□ 1.36
SHOX-201ENST00000334060 CARD11Q9BXL7 1154 aa23.52■■□□□ 1.36
SHOX-201ENST00000334060 HDGFP51858 240 aaKnown RBP23.51■■□□□ 1.35
SHOX-201ENST00000334060 KIAA1210Q9ULL0 1709 aa23.5■■□□□ 1.35
SHOX-201ENST00000334060 TRAK1Q9UPV9 953 aa23.49■■□□□ 1.35
SHOX-201ENST00000334060 GPRASP1Q5JY77 1395 aa23.49■■□□□ 1.35
SHOX-201ENST00000334060 STAC3Q96MF2 364 aa23.49■■□□□ 1.35
SHOX-201ENST00000334060 RBM33Q96EV2 1170 aaKnown RBP23.48■■□□□ 1.35
SHOX-201ENST00000334060 LAMC1P11047 1609 aa23.46■■□□□ 1.35
SHOX-201ENST00000334060 YTHDC2Q9H6S0 1430 aaKnown RBP23.45■■□□□ 1.34
SHOX-201ENST00000334060 PLEKHH1Q9ULM0 1364 aa23.45■■□□□ 1.34
SHOX-201ENST00000334060 USP47Q96K76 1375 aa23.44■■□□□ 1.34
SHOX-201ENST00000334060 HSPA5P11021 654 aaKnown RBP23.44■■□□□ 1.34
SHOX-201ENST00000334060 SAFB2Q14151 953 aaKnown RBP eCLIP23.44■■□□□ 1.34
SHOX-201ENST00000334060 TBX22Q9Y458 520 aa23.44■■□□□ 1.34
SHOX-201ENST00000334060 STRCP1A6NGW2 1772 aa23.43■■□□□ 1.34
SHOX-201ENST00000334060 WAPLQ7Z5K2 1190 aa23.42■■□□□ 1.34
SHOX-201ENST00000334060 KCNA6P17658 529 aa23.41■■□□□ 1.34
SHOX-201ENST00000334060 ROBO2Q9HCK4 1378 aa23.41■■□□□ 1.34
SHOX-201ENST00000334060 ST20-MTHFSA0A0A6YYL1 179 aa23.4■■□□□ 1.34
SHOX-201ENST00000334060 AMOTL2Q9Y2J4 779 aa23.4■■□□□ 1.34
SHOX-201ENST00000334060 ARHGEF28Q8N1W1 1705 aaKnown RBP23.4■■□□□ 1.34
SHOX-201ENST00000334060 ZNF335Q9H4Z2 1342 aaPredicted RBP23.39■■□□□ 1.34
SHOX-201ENST00000334060 DIP2AQ14689 1571 aa23.39■■□□□ 1.34
SHOX-201ENST00000334060 LRPPRCP42704 1394 aaKnown RBP23.38■■□□□ 1.33
SHOX-201ENST00000334060 XRN1Q8IZH2 1706 aaKnown RBP23.37■■□□□ 1.33
SHOX-201ENST00000334060 PRAM1Q96QH2 718 aa23.36■■□□□ 1.33
SHOX-201ENST00000334060 CHD2O14647 1828 aaKnown RBP23.36■■□□□ 1.33
SHOX-201ENST00000334060 C11orf95C9JLR9 678 aaPredicted RBP23.36■■□□□ 1.33
SHOX-201ENST00000334060 EIF4G2P78344 907 aaKnown RBP eCLIP23.33■■□□□ 1.33
SHOX-201ENST00000334060 ABCC11Q96J66 1382 aa23.33■■□□□ 1.33
SHOX-201ENST00000334060 TESK2Q96S53 571 aa23.32■■□□□ 1.32
SHOX-201ENST00000334060 CPS1P31327 1500 aa23.32■■□□□ 1.32
SHOX-201ENST00000334060 TECPR2O15040 1411 aa23.31■■□□□ 1.32
SHOX-201ENST00000334060 KNDC1Q76NI1 1749 aa23.3■■□□□ 1.32
SHOX-201ENST00000334060 MINK1Q8N4C8 1332 aaPredicted RBP23.3■■□□□ 1.32
SHOX-201ENST00000334060 NWD1Q149M9 1564 aa23.29■■□□□ 1.32
SHOX-201ENST00000334060 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.29■■□□□ 1.32
SHOX-201ENST00000334060 QRICH2Q9H0J4 1663 aa23.29■■□□□ 1.32
SHOX-201ENST00000334060 CENPJQ9HC77 1338 aaPredicted RBP23.28■■□□□ 1.32
SHOX-201ENST00000334060 DISP3Q9P2K9 1392 aa23.27■■□□□ 1.32
SHOX-201ENST00000334060 PIK3R4Q99570 1358 aa23.27■■□□□ 1.32
SHOX-201ENST00000334060 DLC1Q96QB1 1528 aa23.26■■□□□ 1.31
SHOX-201ENST00000334060 POGKQ9P215 609 aa23.25■■□□□ 1.31
SHOX-201ENST00000334060 PTCH1Q13635 1447 aa23.24■■□□□ 1.31
SHOX-201ENST00000334060 TULP4Q9NRJ4 1543 aa23.23■■□□□ 1.31
SHOX-201ENST00000334060 NALCNQ8IZF0 1738 aa23.21■■□□□ 1.31
SHOX-201ENST00000334060 XIRP1Q702N8 1843 aaKnown RBP23.2■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms