RNA–Protein interactions for RNA: ENST00000331222.5

CLN8-201, Transcript of CLN8, transmembrane ER and ERGIC protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN8, Length 7,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN8-201ENST00000331222 CT47A1Q5JQC4 288 aaPredicted RBP12.95□□□□□ -0.34
CLN8-201ENST00000331222 PAF1Q8N7H5 531 aa12.95□□□□□ -0.34
CLN8-201ENST00000331222 SETQ01105 290 aaPredicted RBP12.94□□□□□ -0.34
CLN8-201ENST00000331222 NEXNQ0ZGT2 675 aa12.94□□□□□ -0.34
CLN8-201ENST00000331222 CHMP4CQ96CF2 233 aa12.94□□□□□ -0.34
CLN8-201ENST00000331222 DDX49Q9Y6V7 483 aaKnown RBP12.94□□□□□ -0.34
CLN8-201ENST00000331222 CECR2Q9BXF3 1484 aa12.94□□□□□ -0.34
CLN8-201ENST00000331222 FHAD1B1AJZ9 1412 aa12.94□□□□□ -0.34
CLN8-201ENST00000331222 NEUROD6Q96NK8 337 aa12.94□□□□□ -0.34
CLN8-201ENST00000331222 IFIT2P09913 472 aaKnown RBP12.93□□□□□ -0.34
CLN8-201ENST00000331222 DHX37Q8IY37 1157 aaKnown RBP12.93□□□□□ -0.34
CLN8-201ENST00000331222 PANK3Q9H999 370 aa12.93□□□□□ -0.34
CLN8-201ENST00000331222 HMOX1P09601 288 aa12.93□□□□□ -0.34
CLN8-201ENST00000331222 LMOD3Q0VAK6 560 aa12.93□□□□□ -0.34
CLN8-201ENST00000331222 CPLX1O14810 134 aa12.93□□□□□ -0.34
CLN8-201ENST00000331222 RALBP1Q15311 655 aa12.93□□□□□ -0.34
CLN8-201ENST00000331222 CCAR1Q8IX12 1150 aaKnown RBP12.93□□□□□ -0.34
CLN8-201ENST00000331222 KIF3AQ9Y496 699 aa12.93□□□□□ -0.34
CLN8-201ENST00000331222 ERICH2A1L162 156 aa12.92□□□□□ -0.34
CLN8-201ENST00000331222 DCAF8L1A6NGE4 600 aa12.92□□□□□ -0.34
CLN8-201ENST00000331222 EFCAB2Q5VUJ9 269 aa12.92□□□□□ -0.34
CLN8-201ENST00000331222 HDAC5Q9UQL6 1122 aa12.92□□□□□ -0.34
CLN8-201ENST00000331222 HOMER1Q86YM7 354 aa12.92□□□□□ -0.34
CLN8-201ENST00000331222 BICD2Q8TD16 824 aa12.92□□□□□ -0.34
CLN8-201ENST00000331222 EPS15P42566 896 aa12.92□□□□□ -0.34
CLN8-201ENST00000331222 ATP2B2Q01814 1243 aa12.92□□□□□ -0.34
CLN8-201ENST00000331222 COG6Q9Y2V7 657 aa12.91□□□□□ -0.34
CLN8-201ENST00000331222 CCDC70Q6NSX1 233 aa12.9□□□□□ -0.34
CLN8-201ENST00000331222 ZNF771Q7L3S4 317 aaPredicted RBP12.9□□□□□ -0.34
CLN8-201ENST00000331222 NUTM2BA6NNL0 878 aaPredicted RBP12.9□□□□□ -0.34
CLN8-201ENST00000331222 NUTM2EB1AL46 878 aaPredicted RBP12.9□□□□□ -0.34
CLN8-201ENST00000331222 TRDNQ13061 729 aa12.9□□□□□ -0.34
CLN8-201ENST00000331222 NUTM2AQ8IVF1 878 aaPredicted RBP12.9□□□□□ -0.34
CLN8-201ENST00000331222 CRBNQ96SW2 442 aa12.9□□□□□ -0.34
CLN8-201ENST00000331222 VPS37CA5D8V6 355 aaPredicted RBP12.9□□□□□ -0.34
CLN8-201ENST00000331222 WASHC4Q2M389 1173 aa12.9□□□□□ -0.34
CLN8-201ENST00000331222 HSP90AB2PQ58FF8 381 aa12.9□□□□□ -0.34
CLN8-201ENST00000331222 SOGA1O94964 1423 aa12.9□□□□□ -0.34
CLN8-201ENST00000331222 VSIG10Q8N0Z9 540 aa12.9□□□□□ -0.35
CLN8-201ENST00000331222 RIC3Q7Z5B4 369 aa12.89□□□□□ -0.35
CLN8-201ENST00000331222 R3HCC1Q9Y3T6 440 aaKnown RBP12.89□□□□□ -0.35
CLN8-201ENST00000331222 CARMIL2Q6F5E8 1435 aa12.89□□□□□ -0.35
CLN8-201ENST00000331222 FAM161AQ3B820 660 aa12.89□□□□□ -0.35
CLN8-201ENST00000331222 FKBP5Q13451 457 aaPredicted RBP12.88□□□□□ -0.35
CLN8-201ENST00000331222 CHMP4AQ9BY43 222 aa12.88□□□□□ -0.35
CLN8-201ENST00000331222 STRN4Q9NRL3 753 aa12.88□□□□□ -0.35
CLN8-201ENST00000331222 TNIKQ9UKE5 1360 aa12.88□□□□□ -0.35
CLN8-201ENST00000331222 RAB3GAP2Q9H2M9 1393 aa12.88□□□□□ -0.35
CLN8-201ENST00000331222 PDILTQ8N807 584 aa12.88□□□□□ -0.35
CLN8-201ENST00000331222 MROH2BQ7Z745 1585 aa12.87□□□□□ -0.35
CLN8-201ENST00000331222 IPO9Q96P70 1041 aaKnown RBP12.87□□□□□ -0.35
CLN8-201ENST00000331222 TDRD9Q8NDG6 1382 aaKnown RBP12.87□□□□□ -0.35
CLN8-201ENST00000331222 RRP12Q5JTH9 1297 aaKnown RBP12.87□□□□□ -0.35
CLN8-201ENST00000331222 ATP2B1P20020 1258 aa12.87□□□□□ -0.35
CLN8-201ENST00000331222 ATF3P18847 181 aa12.86□□□□□ -0.35
CLN8-201ENST00000331222 G3BP1Q13283 466 aaKnown RBP eCLIP12.86□□□□□ -0.35
CLN8-201ENST00000331222 CCDC47Q96A33 483 aaKnown RBP12.86□□□□□ -0.35
CLN8-201ENST00000331222 L3MBTL2Q969R5 705 aa12.86□□□□□ -0.35
CLN8-201ENST00000331222 ANKRD30AQ9BXX3 1397 aa12.86□□□□□ -0.35
CLN8-201ENST00000331222 IPO7O95373 1038 aaKnown RBP12.86□□□□□ -0.35
CLN8-201ENST00000331222 CPLX2Q6PUV4 134 aaKnown RBP12.85□□□□□ -0.35
CLN8-201ENST00000331222 PIP4K2BP78356 416 aa12.85□□□□□ -0.35
CLN8-201ENST00000331222 TIMELESSQ9UNS1 1208 aa12.85□□□□□ -0.35
CLN8-201ENST00000331222 CCER2I3L3R5 266 aa12.85□□□□□ -0.35
CLN8-201ENST00000331222 ST20-MTHFSA0A0A6YYL1 179 aa12.85□□□□□ -0.35
CLN8-201ENST00000331222 TSPYL4Q9UJ04 414 aa12.85□□□□□ -0.35
CLN8-201ENST00000331222 RIPK4P57078 832 aa12.85□□□□□ -0.35
CLN8-201ENST00000331222 BRPF1P55201 1214 aaPredicted RBP12.84□□□□□ -0.35
CLN8-201ENST00000331222 RBM42Q9BTD8 480 aaKnown RBP12.84□□□□□ -0.35
CLN8-201ENST00000331222 ANKRD20A12PQ8NF67 263 aa12.84□□□□□ -0.35
CLN8-201ENST00000331222 EXOC6Q8TAG9 804 aa12.84□□□□□ -0.35
CLN8-201ENST00000331222 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLN8-201ENST00000331222 CHMP4BP1P59074 171 aa12.83□□□□□ -0.36
CLN8-201ENST00000331222 NLRP2Q9NX02 1062 aa12.83□□□□□ -0.36
CLN8-201ENST00000331222 HSP90AA2PQ14568 343 aaPredicted RBP12.83□□□□□ -0.36
CLN8-201ENST00000331222 LRRFIP1Q32MZ4 808 aaKnown RBP12.83□□□□□ -0.36
CLN8-201ENST00000331222 DDX11L8A8MPP1 907 aa12.82□□□□□ -0.36
CLN8-201ENST00000331222 ZKSCAN1P17029 563 aaPredicted RBP12.82□□□□□ -0.36
CLN8-201ENST00000331222 RBM5P52756 815 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLN8-201ENST00000331222 CEBPZQ03701 1054 aaKnown RBP12.82□□□□□ -0.36
CLN8-201ENST00000331222 RUFY2Q8WXA3 655 aa12.82□□□□□ -0.36
CLN8-201ENST00000331222 RUFY1Q96T51 708 aa12.82□□□□□ -0.36
CLN8-201ENST00000331222 APAF1O14727 1248 aa12.82□□□□□ -0.36
CLN8-201ENST00000331222 DNAJC2Q99543 621 aaKnown RBP12.82□□□□□ -0.36
CLN8-201ENST00000331222 DDX58O95786 925 aaKnown RBP12.82□□□□□ -0.36
CLN8-201ENST00000331222 SPINK5Q9NQ38 1064 aaPredicted RBP12.82□□□□□ -0.36
CLN8-201ENST00000331222 SASS6Q6UVJ0 657 aa12.81□□□□□ -0.36
CLN8-201ENST00000331222 CGNL1Q0VF96 1302 aa12.81□□□□□ -0.36
CLN8-201ENST00000331222 ZKSCAN2Q63HK3 967 aa12.81□□□□□ -0.36
CLN8-201ENST00000331222 EVC2Q86UK5 1308 aa12.81□□□□□ -0.36
CLN8-201ENST00000331222 HOOK1Q9UJC3 728 aaKnown RBP12.81□□□□□ -0.36
CLN8-201ENST00000331222 LNPKQ9C0E8 428 aa12.8□□□□□ -0.36
CLN8-201ENST00000331222 WWC2Q6AWC2 1192 aa12.8□□□□□ -0.36
CLN8-201ENST00000331222 FAM13BQ9NYF5 915 aa12.8□□□□□ -0.36
CLN8-201ENST00000331222 CAGE1Q8TC20 777 aa12.8□□□□□ -0.36
CLN8-201ENST00000331222 OFD1O75665 1012 aa12.8□□□□□ -0.36
CLN8-201ENST00000331222 MAP4K4O95819 1239 aaPredicted RBP12.8□□□□□ -0.36
CLN8-201ENST00000331222 PPM1FP49593 454 aaPredicted RBP12.8□□□□□ -0.36
CLN8-201ENST00000331222 SMC3Q9UQE7 1217 aa12.8□□□□□ -0.36
CLN8-201ENST00000331222 GPS2Q13227 327 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms