RNA–Protein interactions for RNA: ENST00000323144.11

TPM3-204, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,088 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-204ENST00000323144 TOM1O60784 492 aa19.04■□□□□ 0.64
TPM3-204ENST00000323144 EID1Q9Y6B2 187 aa19.04■□□□□ 0.64
TPM3-204ENST00000323144 RRBP1Q9P2E9 1410 aaKnown RBP19.03■□□□□ 0.64
TPM3-204ENST00000323144 RIMS2Q9UQ26 1411 aa19.03■□□□□ 0.64
TPM3-204ENST00000323144 ITGAEP38570 1179 aa19.03■□□□□ 0.64
TPM3-204ENST00000323144 ROBO1Q9Y6N7 1651 aa19.03■□□□□ 0.64
TPM3-204ENST00000323144 CLTCL1P53675 1640 aa19.03■□□□□ 0.64
TPM3-204ENST00000323144 NRXN3Q9Y4C0 1643 aa19.03■□□□□ 0.64
TPM3-204ENST00000323144 DIP2AQ14689 1571 aa19.02■□□□□ 0.64
TPM3-204ENST00000323144 SENP3Q9H4L4 574 aaPredicted RBP19■□□□□ 0.63
TPM3-204ENST00000323144 PLEKHG1Q9ULL1 1385 aa18.99■□□□□ 0.63
TPM3-204ENST00000323144 TMEM94Q12767 1356 aa18.98■□□□□ 0.63
TPM3-204ENST00000323144 SLC26A8Q96RN1 970 aa18.98■□□□□ 0.63
TPM3-204ENST00000323144 SLC52A1Q9NWF4 448 aa18.98■□□□□ 0.63
TPM3-204ENST00000323144 NUP155O75694 1391 aa18.97■□□□□ 0.63
TPM3-204ENST00000323144 TRPM2O94759 1503 aa18.97■□□□□ 0.63
TPM3-204ENST00000323144 XRN1Q8IZH2 1706 aaKnown RBP18.96■□□□□ 0.63
TPM3-204ENST00000323144 ADAMTS13Q76LX8 1427 aa18.95■□□□□ 0.62
TPM3-204ENST00000323144 KIF1BO60333 1816 aa18.93■□□□□ 0.62
TPM3-204ENST00000323144 NAIPQ13075 1403 aa18.93■□□□□ 0.62
TPM3-204ENST00000323144 SETBP1Q9Y6X0 1596 aa18.93■□□□□ 0.62
TPM3-204ENST00000323144 NEXMIFQ5QGS0 1516 aa18.92■□□□□ 0.62
TPM3-204ENST00000323144 RBM33Q96EV2 1170 aaKnown RBP18.92■□□□□ 0.62
TPM3-204ENST00000323144 PHLPP1O60346 1717 aa18.91■□□□□ 0.62
TPM3-204ENST00000323144 SETD1AO15047 1707 aaKnown RBP18.91■□□□□ 0.62
TPM3-204ENST00000323144 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.91■□□□□ 0.62
TPM3-204ENST00000323144 PPP1R15AO75807 674 aaPredicted RBP18.9■□□□□ 0.62
TPM3-204ENST00000323144 KCNA6P17658 529 aa18.9■□□□□ 0.62
TPM3-204ENST00000323144 CHGAP10645 457 aaKnown RBP18.89■□□□□ 0.61
TPM3-204ENST00000323144 NUTM2DQ5VT03 806 aaPredicted RBP18.88■□□□□ 0.61
TPM3-204ENST00000323144 COL16A1Q07092 1604 aaPredicted RBP18.88■□□□□ 0.61
TPM3-204ENST00000323144 HFM1A2PYH4 1435 aa18.87■□□□□ 0.61
TPM3-204ENST00000323144 SOCS7O14512 581 aa18.87■□□□□ 0.61
TPM3-204ENST00000323144 NALCNQ8IZF0 1738 aa18.87■□□□□ 0.61
TPM3-204ENST00000323144 BCANQ96GW7 911 aa18.87■□□□□ 0.61
TPM3-204ENST00000323144 FAM135BQ49AJ0 1406 aa18.85■□□□□ 0.61
TPM3-204ENST00000323144 PTPRUQ92729 1446 aa18.85■□□□□ 0.61
TPM3-204ENST00000323144 MSH6P52701 1360 aa18.84■□□□□ 0.61
TPM3-204ENST00000323144 PPLO60437 1756 aa18.84■□□□□ 0.61
TPM3-204ENST00000323144 PROSER2Q86WR7 435 aaPredicted RBP18.84■□□□□ 0.61
TPM3-204ENST00000323144 IFT172Q9UG01 1749 aa18.8■□□□□ 0.6
TPM3-204ENST00000323144 AHDC1Q5TGY3 1603 aaPredicted RBP18.79■□□□□ 0.6
TPM3-204ENST00000323144 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.79■□□□□ 0.6
TPM3-204ENST00000323144 PIK3R4Q99570 1358 aa18.79■□□□□ 0.6
TPM3-204ENST00000323144 SHPRHQ149N8 1683 aa18.77■□□□□ 0.6
TPM3-204ENST00000323144 TBX22Q9Y458 520 aa18.77■□□□□ 0.6
TPM3-204ENST00000323144 NHSL1Q5SYE7 1610 aa18.77■□□□□ 0.6
TPM3-204ENST00000323144 PHF23Q9BUL5 403 aaPredicted RBP18.76■□□□□ 0.59
TPM3-204ENST00000323144 NCOA3Q9Y6Q9 1424 aa18.74■□□□□ 0.59
TPM3-204ENST00000323144 METP08581 1390 aa18.73■□□□□ 0.59
TPM3-204ENST00000323144 HDGFP51858 240 aaKnown RBP18.73■□□□□ 0.59
TPM3-204ENST00000323144 ASXL1Q8IXJ9 1541 aa18.73■□□□□ 0.59
TPM3-204ENST00000323144 LRP6O75581 1613 aa18.72■□□□□ 0.59
TPM3-204ENST00000323144 ZNF326Q5BKZ1 582 aaKnown RBP18.71■□□□□ 0.59
TPM3-204ENST00000323144 DCCP43146 1447 aa18.71■□□□□ 0.59
TPM3-204ENST00000323144 ADGRL3Q9HAR2 1447 aa18.69■□□□□ 0.58
TPM3-204ENST00000323144 C14orf37Q86TY3 774 aa18.69■□□□□ 0.58
TPM3-204ENST00000323144 MST1RQ04912 1400 aa18.68■□□□□ 0.58
TPM3-204ENST00000323144 SLAIN2Q9P270 581 aa18.68■□□□□ 0.58
TPM3-204ENST00000323144 TRIM52Q96A61 297 aa18.67■□□□□ 0.58
TPM3-204ENST00000323144 RGS17Q9UGC6 210 aaPredicted RBP18.67■□□□□ 0.58
TPM3-204ENST00000323144 AMOTL2Q9Y2J4 779 aa18.67■□□□□ 0.58
TPM3-204ENST00000323144 PTCH1Q13635 1447 aa18.66■□□□□ 0.58
TPM3-204ENST00000323144 KNDC1Q76NI1 1749 aa18.66■□□□□ 0.58
TPM3-204ENST00000323144 JCADQ9P266 1359 aa18.65■□□□□ 0.58
TPM3-204ENST00000323144 PRAG1Q86YV5 1406 aa18.65■□□□□ 0.58
TPM3-204ENST00000323144 LAMC1P11047 1609 aa18.63■□□□□ 0.57
TPM3-204ENST00000323144 FOXD1Q16676 465 aa18.63■□□□□ 0.57
TPM3-204ENST00000323144 SLC4A1APQ9BWU0 796 aaKnown RBP18.63■□□□□ 0.57
TPM3-204ENST00000323144 CDC42BPGQ6DT37 1551 aa18.61■□□□□ 0.57
TPM3-204ENST00000323144 SPATA31E1Q6ZUB1 1445 aa18.61■□□□□ 0.57
TPM3-204ENST00000323144 CADPS2Q86UW7 1296 aa18.61■□□□□ 0.57
TPM3-204ENST00000323144 CCDC144AA2RUR9 1427 aa18.6■□□□□ 0.57
TPM3-204ENST00000323144 ROBO2Q9HCK4 1378 aa18.6■□□□□ 0.57
TPM3-204ENST00000323144 ATF3P18847 181 aa18.6■□□□□ 0.57
TPM3-204ENST00000323144 C19orf44Q9H6X5 657 aa18.6■□□□□ 0.57
TPM3-204ENST00000323144 BRINP3Q76B58 766 aa18.59■□□□□ 0.57
TPM3-204ENST00000323144 POTEAQ6S8J7 498 aa18.56■□□□□ 0.56
TPM3-204ENST00000323144 C1orf167Q5SNV9 1468 aa18.54■□□□□ 0.56
TPM3-204ENST00000323144 PIK3C2GO75747 1445 aa18.54■□□□□ 0.56
TPM3-204ENST00000323144 FMN2Q9NZ56 1722 aa18.54■□□□□ 0.56
TPM3-204ENST00000323144 SETD5Q9C0A6 1442 aa18.53■□□□□ 0.56
TPM3-204ENST00000323144 COL22A1Q8NFW1 1626 aaPredicted RBP18.51■□□□□ 0.55
TPM3-204ENST00000323144 SPATA31A6Q5VVP1 1343 aa18.5■□□□□ 0.55
TPM3-204ENST00000323144 RPGRIP1LQ68CZ1 1315 aa18.5■□□□□ 0.55
TPM3-204ENST00000323144 ADGRF5Q8IZF2 1346 aa18.5■□□□□ 0.55
TPM3-204ENST00000323144 TECPR2O15040 1411 aa18.5■□□□□ 0.55
TPM3-204ENST00000323144 VGFO15240 615 aaPredicted RBP18.5■□□□□ 0.55
TPM3-204ENST00000323144 DDX17Q92841 729 aaKnown RBP18.5■□□□□ 0.55
TPM3-204ENST00000323144 MYOM2P54296 1465 aa18.5■□□□□ 0.55
TPM3-204ENST00000323144 MPHOSPH9Q99550 1183 aa18.49■□□□□ 0.55
TPM3-204ENST00000323144 PNPLA6Q8IY17 1366 aa18.49■□□□□ 0.55
TPM3-204ENST00000323144 RAB3GAP2Q9H2M9 1393 aa18.49■□□□□ 0.55
TPM3-204ENST00000323144 NRXN1Q9ULB1 1477 aa18.48■□□□□ 0.55
TPM3-204ENST00000323144 MARF1Q9Y4F3 1742 aaKnown RBP18.48■□□□□ 0.55
TPM3-204ENST00000323144 RGPD8O14715 1765 aaPredicted RBP18.46■□□□□ 0.55
TPM3-204ENST00000323144 KIF1AQ12756 1690 aa18.46■□□□□ 0.55
TPM3-204ENST00000323144 ANKRD30BQ9BXX2 1392 aa18.45■□□□□ 0.54
TPM3-204ENST00000323144 PLEKHH1Q9ULM0 1364 aa18.44■□□□□ 0.54
TPM3-204ENST00000323144 RGL3Q3MIN7 710 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms