RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 SENP3Q9H4L4 574 aaPredicted RBP29.66■■■□□ 2.34
LIME1-201ENST00000309546 XIRP1Q702N8 1843 aaKnown RBP29.65■■■□□ 2.34
LIME1-201ENST00000309546 ZFYVE9O95405 1425 aa29.63■■■□□ 2.33
LIME1-201ENST00000309546 RIMS2Q9UQ26 1411 aa29.63■■■□□ 2.33
LIME1-201ENST00000309546 PPP1R15AO75807 674 aaPredicted RBP29.63■■■□□ 2.33
LIME1-201ENST00000309546 HSPA1LP34931 641 aa29.62■■■□□ 2.33
LIME1-201ENST00000309546 SPHKAPQ2M3C7 1700 aa29.6■■■□□ 2.33
LIME1-201ENST00000309546 NAIPQ13075 1403 aa29.57■■■□□ 2.32
LIME1-201ENST00000309546 PLEKHG1Q9ULL1 1385 aa29.57■■■□□ 2.32
LIME1-201ENST00000309546 HDGFP51858 240 aaKnown RBP29.57■■■□□ 2.32
LIME1-201ENST00000309546 KCNA6P17658 529 aa29.56■■■□□ 2.32
LIME1-201ENST00000309546 NWD1Q149M9 1564 aa29.55■■■□□ 2.32
LIME1-201ENST00000309546 NUTM2DQ5VT03 806 aaPredicted RBP29.54■■■□□ 2.32
LIME1-201ENST00000309546 TMEM94Q12767 1356 aa29.53■■■□□ 2.32
LIME1-201ENST00000309546 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.52■■■□□ 2.32
LIME1-201ENST00000309546 NKTRP30414 1462 aaKnown RBP29.51■■■□□ 2.31
LIME1-201ENST00000309546 PROSER2Q86WR7 435 aaPredicted RBP29.5■■■□□ 2.31
LIME1-201ENST00000309546 RBM33Q96EV2 1170 aaKnown RBP29.49■■■□□ 2.31
LIME1-201ENST00000309546 CHD2O14647 1828 aaKnown RBP29.49■■■□□ 2.31
LIME1-201ENST00000309546 HFM1A2PYH4 1435 aa29.48■■■□□ 2.31
LIME1-201ENST00000309546 ILDR2Q71H61 639 aa29.47■■■□□ 2.31
LIME1-201ENST00000309546 TRIM52Q96A61 297 aa29.45■■■□□ 2.31
LIME1-201ENST00000309546 CLTCL1P53675 1640 aa29.44■■■□□ 2.3
LIME1-201ENST00000309546 DIP2AQ14689 1571 aa29.43■■■□□ 2.3
LIME1-201ENST00000309546 MED1Q15648 1581 aaPredicted RBP29.43■■■□□ 2.3
LIME1-201ENST00000309546 TRPM2O94759 1503 aa29.42■■■□□ 2.3
LIME1-201ENST00000309546 ADAMTS13Q76LX8 1427 aa29.42■■■□□ 2.3
LIME1-201ENST00000309546 TBX22Q9Y458 520 aa29.41■■■□□ 2.3
LIME1-201ENST00000309546 ZNF326Q5BKZ1 582 aaKnown RBP29.4■■■□□ 2.3
LIME1-201ENST00000309546 KIF1BO60333 1816 aa29.39■■■□□ 2.3
LIME1-201ENST00000309546 MSH6P52701 1360 aa29.37■■■□□ 2.29
LIME1-201ENST00000309546 ROBO1Q9Y6N7 1651 aa29.34■■■□□ 2.29
LIME1-201ENST00000309546 NRXN3Q9Y4C0 1643 aa29.34■■■□□ 2.29
LIME1-201ENST00000309546 FAM135BQ49AJ0 1406 aa29.32■■■□□ 2.28
LIME1-201ENST00000309546 SLC4A1APQ9BWU0 796 aaKnown RBP29.32■■■□□ 2.28
LIME1-201ENST00000309546 PIK3R4Q99570 1358 aa29.31■■■□□ 2.28
LIME1-201ENST00000309546 SETBP1Q9Y6X0 1596 aa29.3■■■□□ 2.28
LIME1-201ENST00000309546 NEXMIFQ5QGS0 1516 aa29.3■■■□□ 2.28
LIME1-201ENST00000309546 C14orf37Q86TY3 774 aa29.3■■■□□ 2.28
LIME1-201ENST00000309546 PTPRUQ92729 1446 aa29.27■■■□□ 2.28
LIME1-201ENST00000309546 AMOTL2Q9Y2J4 779 aa29.25■■■□□ 2.27
LIME1-201ENST00000309546 PHF23Q9BUL5 403 aaPredicted RBP29.24■■■□□ 2.27
LIME1-201ENST00000309546 XRN1Q8IZH2 1706 aaKnown RBP29.23■■■□□ 2.27
LIME1-201ENST00000309546 NCOA3Q9Y6Q9 1424 aa29.23■■■□□ 2.27
LIME1-201ENST00000309546 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.23■■■□□ 2.27
LIME1-201ENST00000309546 SLAIN2Q9P270 581 aa29.22■■■□□ 2.27
LIME1-201ENST00000309546 SOCS7O14512 581 aa29.21■■■□□ 2.27
LIME1-201ENST00000309546 FOXD1Q16676 465 aa29.2■■■□□ 2.26
LIME1-201ENST00000309546 PHLPP1O60346 1717 aa29.19■■■□□ 2.26
LIME1-201ENST00000309546 METP08581 1390 aa29.18■■■□□ 2.26
LIME1-201ENST00000309546 PPLO60437 1756 aa29.16■■■□□ 2.26
LIME1-201ENST00000309546 C19orf44Q9H6X5 657 aa29.15■■■□□ 2.26
LIME1-201ENST00000309546 ATF3P18847 181 aa29.14■■■□□ 2.26
LIME1-201ENST00000309546 CADPS2Q86UW7 1296 aa29.13■■■□□ 2.25
LIME1-201ENST00000309546 VGFO15240 615 aaPredicted RBP29.11■■■□□ 2.25
LIME1-201ENST00000309546 MPHOSPH9Q99550 1183 aa29.11■■■□□ 2.25
LIME1-201ENST00000309546 SETD1AO15047 1707 aaKnown RBP29.11■■■□□ 2.25
LIME1-201ENST00000309546 CCDC144AA2RUR9 1427 aa29.11■■■□□ 2.25
LIME1-201ENST00000309546 RPGRIP1LQ68CZ1 1315 aa29.09■■■□□ 2.25
LIME1-201ENST00000309546 SETD5Q9C0A6 1442 aa29.07■■■□□ 2.24
LIME1-201ENST00000309546 COL16A1Q07092 1604 aaPredicted RBP29.06■■■□□ 2.24
LIME1-201ENST00000309546 DCCP43146 1447 aa29.05■■■□□ 2.24
LIME1-201ENST00000309546 NALCNQ8IZF0 1738 aa29.05■■■□□ 2.24
LIME1-201ENST00000309546 ADGRL3Q9HAR2 1447 aa29.02■■■□□ 2.24
LIME1-201ENST00000309546 AHDC1Q5TGY3 1603 aaPredicted RBP29.02■■■□□ 2.24
LIME1-201ENST00000309546 JCADQ9P266 1359 aa29.01■■■□□ 2.23
LIME1-201ENST00000309546 IFT172Q9UG01 1749 aa29■■■□□ 2.23
LIME1-201ENST00000309546 RGL3Q3MIN7 710 aa29■■■□□ 2.23
LIME1-201ENST00000309546 SPATA31E1Q6ZUB1 1445 aa28.99■■■□□ 2.23
LIME1-201ENST00000309546 MST1RQ04912 1400 aa28.98■■■□□ 2.23
LIME1-201ENST00000309546 PTCH1Q13635 1447 aa28.98■■■□□ 2.23
LIME1-201ENST00000309546 RAB3GAP2Q9H2M9 1393 aa28.98■■■□□ 2.23
LIME1-201ENST00000309546 ACIN1Q9UKV3 1341 aaKnown RBP28.97■■■□□ 2.23
LIME1-201ENST00000309546 BRINP3Q76B58 766 aa28.97■■■□□ 2.23
LIME1-201ENST00000309546 ASXL1Q8IXJ9 1541 aa28.97■■■□□ 2.23
LIME1-201ENST00000309546 ADGRF5Q8IZF2 1346 aa28.94■■■□□ 2.22
LIME1-201ENST00000309546 ROBO2Q9HCK4 1378 aa28.94■■■□□ 2.22
LIME1-201ENST00000309546 RGS17Q9UGC6 210 aaPredicted RBP28.94■■■□□ 2.22
LIME1-201ENST00000309546 ANKRD30BQ9BXX2 1392 aa28.92■■■□□ 2.22
LIME1-201ENST00000309546 SHPRHQ149N8 1683 aa28.91■■■□□ 2.22
LIME1-201ENST00000309546 NHSL1Q5SYE7 1610 aa28.91■■■□□ 2.22
LIME1-201ENST00000309546 PRAG1Q86YV5 1406 aa28.9■■■□□ 2.22
LIME1-201ENST00000309546 LRP6O75581 1613 aa28.85■■■□□ 2.21
LIME1-201ENST00000309546 SPATA31A6Q5VVP1 1343 aa28.85■■■□□ 2.21
LIME1-201ENST00000309546 PIK3C2GO75747 1445 aa28.84■■■□□ 2.21
LIME1-201ENST00000309546 C1orf167Q5SNV9 1468 aa28.84■■■□□ 2.21
LIME1-201ENST00000309546 STK26Q9P289 416 aa28.83■■■□□ 2.21
LIME1-201ENST00000309546 MEX3CQ5U5Q3 659 aaKnown RBP28.82■■■□□ 2.2
LIME1-201ENST00000309546 DDX17Q92841 729 aaKnown RBP28.82■■■□□ 2.2
LIME1-201ENST00000309546 KNDC1Q76NI1 1749 aa28.81■■■□□ 2.2
LIME1-201ENST00000309546 POTEAQ6S8J7 498 aa28.81■■■□□ 2.2
LIME1-201ENST00000309546 LRPPRCP42704 1394 aaKnown RBP28.78■■■□□ 2.2
LIME1-201ENST00000309546 TMEM132EQ6IEE7 984 aa28.78■■■□□ 2.2
LIME1-201ENST00000309546 CDC42BPGQ6DT37 1551 aa28.78■■■□□ 2.2
LIME1-201ENST00000309546 MYOM2P54296 1465 aa28.77■■■□□ 2.2
LIME1-201ENST00000309546 TECPR2O15040 1411 aa28.77■■■□□ 2.2
LIME1-201ENST00000309546 NUTM2BA6NNL0 878 aaPredicted RBP28.76■■■□□ 2.19
LIME1-201ENST00000309546 NUTM2EB1AL46 878 aaPredicted RBP28.76■■■□□ 2.19
LIME1-201ENST00000309546 NUTM2AQ8IVF1 878 aaPredicted RBP28.76■■■□□ 2.19
LIME1-201ENST00000309546 LAMC1P11047 1609 aa28.76■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms