RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ERICH6BQ5W0A0 696 aa32.41■■■□□ 2.78
TRIM54-201ENST00000296098 PANK3Q9H999 370 aa32.41■■■□□ 2.78
TRIM54-201ENST00000296098 SYNMO15061 1565 aa32.39■■■□□ 2.78
TRIM54-201ENST00000296098 NPATQ14207 1427 aa32.38■■■□□ 2.77
TRIM54-201ENST00000296098 ABCC3O15438 1527 aa32.37■■■□□ 2.77
TRIM54-201ENST00000296098 NRXN1Q9ULB1 1477 aa32.36■■■□□ 2.77
TRIM54-201ENST00000296098 DIP2CQ9Y2E4 1556 aa32.36■■■□□ 2.77
TRIM54-201ENST00000296098 RICTORQ6R327 1708 aa32.35■■■□□ 2.77
TRIM54-201ENST00000296098 CDCA8Q53HL2 280 aa32.34■■■□□ 2.77
TRIM54-201ENST00000296098 CAMSAP1Q5T5Y3 1602 aa32.34■■■□□ 2.77
TRIM54-201ENST00000296098 NUDCQ9Y266 331 aa32.33■■■□□ 2.77
TRIM54-201ENST00000296098 MYOM1P52179 1685 aa32.32■■■□□ 2.76
TRIM54-201ENST00000296098 CC2D1BQ5T0F9 858 aaKnown RBP32.32■■■□□ 2.76
TRIM54-201ENST00000296098 GGT6Q6P531 493 aa32.32■■■□□ 2.76
TRIM54-201ENST00000296098 ADGRF5Q8IZF2 1346 aa32.32■■■□□ 2.76
TRIM54-201ENST00000296098 KDM5AP29375 1690 aaKnown RBP32.31■■■□□ 2.76
TRIM54-201ENST00000296098 RAPGEF3O95398 923 aa32.29■■■□□ 2.76
TRIM54-201ENST00000296098 PPLO60437 1756 aa32.29■■■□□ 2.76
TRIM54-201ENST00000296098 CFAP70Q5T0N1 1121 aa32.28■■■□□ 2.76
TRIM54-201ENST00000296098 GLI2P10070 1586 aa32.27■■■□□ 2.76
TRIM54-201ENST00000296098 NOS1P29475 1434 aa32.27■■■□□ 2.76
TRIM54-201ENST00000296098 MYO3AQ8NEV4 1616 aa32.26■■■□□ 2.76
TRIM54-201ENST00000296098 CFAP65Q6ZU64 1925 aaKnown RBP32.26■■■□□ 2.75
TRIM54-201ENST00000296098 SETBP1Q9Y6X0 1596 aa32.25■■■□□ 2.75
TRIM54-201ENST00000296098 ZC3H13Q5T200 1668 aaKnown RBP32.25■■■□□ 2.75
TRIM54-201ENST00000296098 ZMYM4Q5VZL5 1548 aa32.24■■■□□ 2.75
TRIM54-201ENST00000296098 PPP4R2Q9NY27 417 aa32.23■■■□□ 2.75
TRIM54-201ENST00000296098 SIGLEC1Q9BZZ2 1709 aa32.23■■■□□ 2.75
TRIM54-201ENST00000296098 INSRP06213 1382 aa32.21■■■□□ 2.75
TRIM54-201ENST00000296098 PIK3C2BO00750 1634 aa32.2■■■□□ 2.75
TRIM54-201ENST00000296098 SLC24A1O60721 1099 aa32.2■■■□□ 2.75
TRIM54-201ENST00000296098 CHGAP10645 457 aaKnown RBP32.2■■■□□ 2.75
TRIM54-201ENST00000296098 KNSTRNQ9Y448 316 aa32.2■■■□□ 2.75
TRIM54-201ENST00000296098 ASXL1Q8IXJ9 1541 aa32.19■■■□□ 2.74
TRIM54-201ENST00000296098 PIK3C2GO75747 1445 aa32.19■■■□□ 2.74
TRIM54-201ENST00000296098 ERVK-7P63135 1459 aa32.19■■■□□ 2.74
TRIM54-201ENST00000296098 SENP3-EIF4A1A0A087X0R7 540 aa32.18■■■□□ 2.74
TRIM54-201ENST00000296098 RIMBP3CA6NJZ7 1639 aa32.17■■■□□ 2.74
TRIM54-201ENST00000296098 RIMBP3BA6NNM3 1639 aa32.17■■■□□ 2.74
TRIM54-201ENST00000296098 RIMBP3Q9UFD9 1639 aa32.17■■■□□ 2.74
TRIM54-201ENST00000296098 BLMP54132 1417 aaPredicted RBP32.16■■■□□ 2.74
TRIM54-201ENST00000296098 RNF123Q5XPI4 1314 aa32.15■■■□□ 2.74
TRIM54-201ENST00000296098 CYB5RLQ6IPT4 315 aa32.14■■■□□ 2.74
TRIM54-201ENST00000296098 YEATS2Q9ULM3 1422 aa32.14■■■□□ 2.74
TRIM54-201ENST00000296098 RPGRIP1LQ68CZ1 1315 aa32.14■■■□□ 2.73
TRIM54-201ENST00000296098 SBNO2Q9Y2G9 1366 aa32.13■■■□□ 2.73
TRIM54-201ENST00000296098 ARHGAP31Q2M1Z3 1444 aa32.13■■■□□ 2.73
TRIM54-201ENST00000296098 AMER1Q5JTC6 1135 aaPredicted RBP32.13■■■□□ 2.73
TRIM54-201ENST00000296098 NPC1L1Q9UHC9 1359 aa32.11■■■□□ 2.73
TRIM54-201ENST00000296098 ADGRB1O14514 1584 aa32.1■■■□□ 2.73
TRIM54-201ENST00000296098 DIP2BQ9P265 1576 aa32.1■■■□□ 2.73
TRIM54-201ENST00000296098 QRICH2Q9H0J4 1663 aa32.07■■■□□ 2.72
TRIM54-201ENST00000296098 C14orf93Q9H972 538 aaKnown RBP32.06■■■□□ 2.72
TRIM54-201ENST00000296098 PPP2R1AP30153 589 aa32.05■■■□□ 2.72
TRIM54-201ENST00000296098 NEXMIFQ5QGS0 1516 aa32.05■■■□□ 2.72
TRIM54-201ENST00000296098 CENPJQ9HC77 1338 aaPredicted RBP32.05■■■□□ 2.72
TRIM54-201ENST00000296098 PDE3BQ13370 1112 aa32.05■■■□□ 2.72
TRIM54-201ENST00000296098 PREX1Q8TCU6 1659 aa32■■■□□ 2.71
TRIM54-201ENST00000296098 SALL2Q9Y467 1007 aaPredicted RBP31.98■■■□□ 2.71
TRIM54-201ENST00000296098 B4GALNT3Q6L9W6 998 aa31.97■■■□□ 2.71
TRIM54-201ENST00000296098 FAM69CQ0P6D2 419 aa31.97■■■□□ 2.71
TRIM54-201ENST00000296098 TRAK1Q9UPV9 953 aa31.97■■■□□ 2.71
TRIM54-201ENST00000296098 TSPOAP1O95153 1857 aa31.94■■■□□ 2.7
TRIM54-201ENST00000296098 VGFO15240 615 aaPredicted RBP31.93■■■□□ 2.7
TRIM54-201ENST00000296098 ARHGEF28Q8N1W1 1705 aaKnown RBP31.93■■■□□ 2.7
TRIM54-201ENST00000296098 WDR43Q15061 677 aaKnown RBP eCLIP31.92■■■□□ 2.7
TRIM54-201ENST00000296098 SLC52A1Q9NWF4 448 aa31.92■■■□□ 2.7
TRIM54-201ENST00000296098 ADAMTS8Q9UP79 889 aa31.92■■■□□ 2.7
TRIM54-201ENST00000296098 RBM19Q9Y4C8 960 aaKnown RBP31.92■■■□□ 2.7
TRIM54-201ENST00000296098 REREQ9P2R6 1566 aa31.91■■■□□ 2.7
TRIM54-201ENST00000296098 TMEM132EQ6IEE7 984 aa31.91■■■□□ 2.7
TRIM54-201ENST00000296098 MYO5BQ9ULV0 1848 aa31.91■■■□□ 2.7
TRIM54-201ENST00000296098 TMEM131LA2VDJ0 1609 aa31.89■■■□□ 2.7
TRIM54-201ENST00000296098 ZFYVE9O95405 1425 aa31.89■■■□□ 2.7
TRIM54-201ENST00000296098 IDI1Q13907 227 aa31.89■■■□□ 2.7
TRIM54-201ENST00000296098 RCAN3Q9UKA8 241 aa31.88■■■□□ 2.69
TRIM54-201ENST00000296098 CARD14Q9BXL6 1004 aa31.88■■■□□ 2.69
TRIM54-201ENST00000296098 RRP1P56182 461 aaKnown RBP31.87■■■□□ 2.69
TRIM54-201ENST00000296098 NUTM2DQ5VT03 806 aaPredicted RBP31.85■■■□□ 2.69
TRIM54-201ENST00000296098 CDCA7LQ96GN5 454 aa31.84■■■□□ 2.69
TRIM54-201ENST00000296098 AGLP35573 1532 aa31.83■■■□□ 2.69
TRIM54-201ENST00000296098 USP32Q8NFA0 1604 aa31.82■■■□□ 2.68
TRIM54-201ENST00000296098 NSD3Q9BZ95 1437 aa31.81■■■□□ 2.68
TRIM54-201ENST00000296098 TULP4Q9NRJ4 1543 aa31.8■■■□□ 2.68
TRIM54-201ENST00000296098 CCDC136Q96JN2 1154 aa31.78■■■□□ 2.68
TRIM54-201ENST00000296098 PLEKHH1Q9ULM0 1364 aa31.75■■■□□ 2.67
TRIM54-201ENST00000296098 PUS7Q96PZ0 661 aaKnown RBP31.75■■■□□ 2.67
TRIM54-201ENST00000296098 CLTCQ00610 1675 aaKnown RBP31.74■■■□□ 2.67
TRIM54-201ENST00000296098 EVC2Q86UK5 1308 aa31.74■■■□□ 2.67
TRIM54-201ENST00000296098 SLC12A5Q9H2X9 1139 aa31.73■■■□□ 2.67
TRIM54-201ENST00000296098 PPP6R1Q9UPN7 881 aa31.71■■■□□ 2.67
TRIM54-201ENST00000296098 FBXO31Q5XUX0 539 aaPredicted RBP31.7■■■□□ 2.67
TRIM54-201ENST00000296098 ZNF521Q96K83 1311 aa31.69■■■□□ 2.66
TRIM54-201ENST00000296098 ARHGEF40Q8TER5 1519 aa31.69■■■□□ 2.66
TRIM54-201ENST00000296098 POLR3AO14802 1390 aaPredicted RBP31.68■■■□□ 2.66
TRIM54-201ENST00000296098 KIF13AQ9H1H9 1805 aa31.67■■■□□ 2.66
TRIM54-201ENST00000296098 PTPRMP28827 1452 aa31.66■■■□□ 2.66
TRIM54-201ENST00000296098 SPATA31D1Q6ZQQ2 1576 aa31.66■■■□□ 2.66
TRIM54-201ENST00000296098 ANKRD36BQ8N2N9 1353 aa31.66■■■□□ 2.66
TRIM54-201ENST00000296098 MORC1Q86VD1 984 aa31.65■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms