RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 RUNDC1Q96C34 613 aa22.94■■□□□ 1.26
PCDH1-201ENST00000287008 SLC52A1Q9NWF4 448 aa22.94■■□□□ 1.26
PCDH1-201ENST00000287008 CC2D2AQ9P2K1 1620 aa22.93■■□□□ 1.26
PCDH1-201ENST00000287008 HMOX1P09601 288 aa22.93■■□□□ 1.26
PCDH1-201ENST00000287008 RASSF8Q8NHQ8 419 aa22.93■■□□□ 1.26
PCDH1-201ENST00000287008 COG6Q9Y2V7 657 aa22.93■■□□□ 1.26
PCDH1-201ENST00000287008 GNAI1P63096 354 aa22.93■■□□□ 1.26
PCDH1-201ENST00000287008 NOL8Q76FK4 1167 aaKnown RBP22.93■■□□□ 1.26
PCDH1-201ENST00000287008 RRBP1Q9P2E9 1410 aaKnown RBP22.92■■□□□ 1.26
PCDH1-201ENST00000287008 ST18O60284 1047 aa22.92■■□□□ 1.26
PCDH1-201ENST00000287008 ESCO1Q5FWF5 840 aa22.92■■□□□ 1.26
PCDH1-201ENST00000287008 TSPYL4Q9UJ04 414 aa22.92■■□□□ 1.26
PCDH1-201ENST00000287008 RAPGEF3O95398 923 aa22.92■■□□□ 1.26
PCDH1-201ENST00000287008 SYAP1Q96A49 352 aaPredicted RBP22.92■■□□□ 1.26
PCDH1-201ENST00000287008 L1TD1Q5T7N2 865 aaKnown RBP22.91■■□□□ 1.26
PCDH1-201ENST00000287008 ABTB2Q8N961 1025 aa22.91■■□□□ 1.26
PCDH1-201ENST00000287008 KIF16BQ96L93 1317 aa22.91■■□□□ 1.26
PCDH1-201ENST00000287008 POLA1P09884 1462 aaPredicted RBP22.9■■□□□ 1.26
PCDH1-201ENST00000287008 DDX19BQ9UMR2 479 aa22.9■■□□□ 1.26
PCDH1-201ENST00000287008 PLEKHH2Q8IVE3 1493 aa22.9■■□□□ 1.26
PCDH1-201ENST00000287008 CHAF1AQ13111 956 aaPredicted RBP22.9■■□□□ 1.26
PCDH1-201ENST00000287008 ZBED9Q6R2W3 1325 aa22.9■■□□□ 1.26
PCDH1-201ENST00000287008 PLIN1O60240 522 aa22.89■■□□□ 1.26
PCDH1-201ENST00000287008 NOL10Q9BSC4 688 aaKnown RBP22.89■■□□□ 1.25
PCDH1-201ENST00000287008 KIF7Q2M1P5 1343 aa22.89■■□□□ 1.25
PCDH1-201ENST00000287008 CENPQQ7L2Z9 268 aaPredicted RBP22.88■■□□□ 1.25
PCDH1-201ENST00000287008 TROQ12816 1431 aaPredicted RBP22.88■■□□□ 1.25
PCDH1-201ENST00000287008 SNAPC4Q5SXM2 1469 aa22.88■■□□□ 1.25
PCDH1-201ENST00000287008 DIAPH3Q9NSV4 1193 aa22.87■■□□□ 1.25
PCDH1-201ENST00000287008 ERICH3Q5RHP9 1530 aa22.87■■□□□ 1.25
PCDH1-201ENST00000287008 MARCH6O60337 910 aa22.86■■□□□ 1.25
PCDH1-201ENST00000287008 CHMP4CQ96CF2 233 aa22.86■■□□□ 1.25
PCDH1-201ENST00000287008 HFM1A2PYH4 1435 aa22.86■■□□□ 1.25
PCDH1-201ENST00000287008 PRAM1Q96QH2 718 aa22.86■■□□□ 1.25
PCDH1-201ENST00000287008 NCBP3Q53F19 620 aaKnown RBP22.86■■□□□ 1.25
PCDH1-201ENST00000287008 DZIP1LQ8IYY4 767 aaKnown RBP22.86■■□□□ 1.25
PCDH1-201ENST00000287008 CCDC7Q96M83 1385 aa22.86■■□□□ 1.25
PCDH1-201ENST00000287008 VPS37DQ86XT2 251 aa22.86■■□□□ 1.25
PCDH1-201ENST00000287008 USP35Q9P2H5 1018 aa22.86■■□□□ 1.25
PCDH1-201ENST00000287008 HMGXB3Q12766 1538 aa22.86■■□□□ 1.25
PCDH1-201ENST00000287008 CSPP1Q1MSJ5 1256 aa22.85■■□□□ 1.25
PCDH1-201ENST00000287008 RRP1P56182 461 aaKnown RBP22.85■■□□□ 1.25
PCDH1-201ENST00000287008 MSNP26038 577 aaKnown RBP22.84■■□□□ 1.25
PCDH1-201ENST00000287008 MTHFSP49914 203 aa22.84■■□□□ 1.25
PCDH1-201ENST00000287008 ARAP1Q96P48 1450 aa22.84■■□□□ 1.25
PCDH1-201ENST00000287008 IFIT2P09913 472 aaKnown RBP22.84■■□□□ 1.25
PCDH1-201ENST00000287008 G3BP1Q13283 466 aaKnown RBP eCLIP22.84■■□□□ 1.25
PCDH1-201ENST00000287008 ANKLE2Q86XL3 938 aa22.84■■□□□ 1.25
PCDH1-201ENST00000287008 RUFY2Q8WXA3 655 aa22.84■■□□□ 1.25
PCDH1-201ENST00000287008 AMOTL1Q8IY63 956 aa22.84■■□□□ 1.25
PCDH1-201ENST00000287008 C9orf84Q5VXU9 1444 aa22.83■■□□□ 1.25
PCDH1-201ENST00000287008 NAP1L5Q96NT1 182 aaPredicted RBP22.83■■□□□ 1.25
PCDH1-201ENST00000287008 SF3A1Q15459 793 aaKnown RBP22.83■■□□□ 1.24
PCDH1-201ENST00000287008 ROCK1Q13464 1354 aa22.83■■□□□ 1.24
PCDH1-201ENST00000287008 CPLX2Q6PUV4 134 aaKnown RBP22.82■■□□□ 1.24
PCDH1-201ENST00000287008 AKAP17AQ02040 695 aaKnown RBP22.82■■□□□ 1.24
PCDH1-201ENST00000287008 KIAA2012Q0VF49 1180 aa22.82■■□□□ 1.24
PCDH1-201ENST00000287008 VPS53Q5VIR6 699 aa22.81■■□□□ 1.24
PCDH1-201ENST00000287008 POGZQ7Z3K3 1410 aa22.81■■□□□ 1.24
PCDH1-201ENST00000287008 TPM4P67936 248 aa22.81■■□□□ 1.24
PCDH1-201ENST00000287008 SYNE3Q6ZMZ3 975 aa22.81■■□□□ 1.24
PCDH1-201ENST00000287008 RIC3Q7Z5B4 369 aa22.81■■□□□ 1.24
PCDH1-201ENST00000287008 GZF1Q9H116 711 aaPredicted RBP22.8■■□□□ 1.24
PCDH1-201ENST00000287008 CRBNQ96SW2 442 aa22.8■■□□□ 1.24
PCDH1-201ENST00000287008 PHF23Q9BUL5 403 aaPredicted RBP22.8■■□□□ 1.24
PCDH1-201ENST00000287008 EXOC6Q8TAG9 804 aa22.8■■□□□ 1.24
PCDH1-201ENST00000287008 SLC26A8Q96RN1 970 aa22.8■■□□□ 1.24
PCDH1-201ENST00000287008 EFCAB5A4FU69 1503 aa22.79■■□□□ 1.24
PCDH1-201ENST00000287008 GAS2L2Q8NHY3 880 aa22.79■■□□□ 1.24
PCDH1-201ENST00000287008 TRIM34Q9BYJ4 488 aa22.79■■□□□ 1.24
PCDH1-201ENST00000287008 FOXD4L1Q9NU39 408 aa22.79■■□□□ 1.24
PCDH1-201ENST00000287008 HSP90AB4PQ58FF6 505 aa22.78■■□□□ 1.24
PCDH1-201ENST00000287008 AIMP1Q12904 312 aaKnown RBP22.78■■□□□ 1.24
PCDH1-201ENST00000287008 ZKSCAN1P17029 563 aaPredicted RBP22.78■■□□□ 1.24
PCDH1-201ENST00000287008 SYNJ1O43426 1573 aa22.77■■□□□ 1.24
PCDH1-201ENST00000287008 FAM184AQ8NB25 1140 aa22.77■■□□□ 1.24
PCDH1-201ENST00000287008 APPP05067 770 aa22.77■■□□□ 1.24
PCDH1-201ENST00000287008 PLEKHO1Q53GL0 409 aaPredicted RBP22.77■■□□□ 1.24
PCDH1-201ENST00000287008 ZNF692Q9BU19 519 aaPredicted RBP22.77■■□□□ 1.23
PCDH1-201ENST00000287008 PRXQ9BXM0 1461 aa22.76■■□□□ 1.23
PCDH1-201ENST00000287008 REC8O95072 547 aa22.76■■□□□ 1.23
PCDH1-201ENST00000287008 NBPF1Q3BBV0 1214 aa22.76■■□□□ 1.23
PCDH1-201ENST00000287008 KLHL34Q8N239 644 aa22.75■■□□□ 1.23
PCDH1-201ENST00000287008 RBM33Q96EV2 1170 aaKnown RBP22.75■■□□□ 1.23
PCDH1-201ENST00000287008 STRN4Q9NRL3 753 aa22.75■■□□□ 1.23
PCDH1-201ENST00000287008 H3BQV1 296 aa22.75■■□□□ 1.23
PCDH1-201ENST00000287008 IFFO2Q5TF58 517 aa22.75■■□□□ 1.23
PCDH1-201ENST00000287008 KIAA0586Q9BVV6 1533 aa22.73■■□□□ 1.23
PCDH1-201ENST00000287008 FAM161AQ3B820 660 aa22.73■■□□□ 1.23
PCDH1-201ENST00000287008 SLC12A5Q9H2X9 1139 aa22.73■■□□□ 1.23
PCDH1-201ENST00000287008 TCP11L2Q8N4U5 519 aa22.72■■□□□ 1.23
PCDH1-201ENST00000287008 RAD21O60216 631 aa22.72■■□□□ 1.23
PCDH1-201ENST00000287008 TRDNQ13061 729 aa22.72■■□□□ 1.23
PCDH1-201ENST00000287008 FBXW7Q969H0 707 aa22.72■■□□□ 1.23
PCDH1-201ENST00000287008 TATP17735 454 aaPredicted RBP22.71■■□□□ 1.23
PCDH1-201ENST00000287008 CDK19Q9BWU1 502 aa22.71■■□□□ 1.23
PCDH1-201ENST00000287008 PRKAR2BP31323 418 aa22.71■■□□□ 1.23
PCDH1-201ENST00000287008 CABP1Q9NZU7 370 aa22.71■■□□□ 1.23
PCDH1-201ENST00000287008 KIAA1107Q9UPP5 1409 aa22.7■■□□□ 1.22
PCDH1-201ENST00000287008 CTDP1Q9Y5B0 961 aaPredicted RBP22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms