RNA–Protein interactions for RNA: ENST00000286835.11

SCAF4-201, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCAF4, Length 4,193 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-201ENST00000286835 CGNL1Q0VF96 1302 aa17.05■□□□□ 0.32
SCAF4-201ENST00000286835 IGHDP01880 384 aa17.05■□□□□ 0.32
SCAF4-201ENST00000286835 TRAK1Q9UPV9 953 aa17.04■□□□□ 0.32
SCAF4-201ENST00000286835 L1TD1Q5T7N2 865 aaKnown RBP17.04■□□□□ 0.32
SCAF4-201ENST00000286835 TESK2Q96S53 571 aa17.04■□□□□ 0.32
SCAF4-201ENST00000286835 PLEKHH1Q9ULM0 1364 aa17.04■□□□□ 0.32
SCAF4-201ENST00000286835 ARHGAP5Q13017 1502 aa17.04■□□□□ 0.32
SCAF4-201ENST00000286835 FOXD4L1Q9NU39 408 aa17.03■□□□□ 0.32
SCAF4-201ENST00000286835 RWDD1Q9H446 243 aaPredicted RBP17.03■□□□□ 0.32
SCAF4-201ENST00000286835 SPINK5Q9NQ38 1064 aaPredicted RBP17.03■□□□□ 0.32
SCAF4-201ENST00000286835 MAPK8IP3Q9UPT6 1336 aa17.03■□□□□ 0.32
SCAF4-201ENST00000286835 ITPRIPQ8IWB1 547 aa17.03■□□□□ 0.32
SCAF4-201ENST00000286835 PMFBP1Q8TBY8 1022 aa17.02■□□□□ 0.32
SCAF4-201ENST00000286835 TRIM44Q96DX7 344 aaPredicted RBP17.02■□□□□ 0.31
SCAF4-201ENST00000286835 GOLGA6L3A6NEY3 463 aa17.01■□□□□ 0.31
SCAF4-201ENST00000286835 CFAP70Q5T0N1 1121 aa17.01■□□□□ 0.31
SCAF4-201ENST00000286835 ABCA5Q8WWZ7 1642 aa17.01■□□□□ 0.31
SCAF4-201ENST00000286835 RAPGEF3O95398 923 aa17.01■□□□□ 0.31
SCAF4-201ENST00000286835 SRPK2P78362 688 aaKnown RBP17■□□□□ 0.31
SCAF4-201ENST00000286835 HSCBQ8IWL3 235 aa17■□□□□ 0.31
SCAF4-201ENST00000286835 SEC24BO95487 1268 aa16.99■□□□□ 0.31
SCAF4-201ENST00000286835 SMC4Q9NTJ3 1288 aa16.99■□□□□ 0.31
SCAF4-201ENST00000286835 ZBTB7CA1YPR0 619 aa16.98■□□□□ 0.31
SCAF4-201ENST00000286835 HSP90AB1P08238 724 aaKnown RBP16.98■□□□□ 0.31
SCAF4-201ENST00000286835 KDM5CP41229 1560 aa16.98■□□□□ 0.31
SCAF4-201ENST00000286835 NCLP19338 710 aaKnown RBP16.98■□□□□ 0.31
SCAF4-201ENST00000286835 KIF14Q15058 1648 aa16.98■□□□□ 0.31
SCAF4-201ENST00000286835 PNNQ9H307 717 aaKnown RBP16.98■□□□□ 0.31
SCAF4-201ENST00000286835 PDZRN3Q9UPQ7 1066 aa16.98■□□□□ 0.31
SCAF4-201ENST00000286835 PRAG1Q86YV5 1406 aa16.97■□□□□ 0.31
SCAF4-201ENST00000286835 RAPGEF6Q8TEU7 1601 aa16.97■□□□□ 0.31
SCAF4-201ENST00000286835 TCP11L2Q8N4U5 519 aa16.96■□□□□ 0.31
SCAF4-201ENST00000286835 UHRF1BP1Q6BDS2 1440 aa16.96■□□□□ 0.31
SCAF4-201ENST00000286835 KDM2BQ8NHM5 1336 aa16.96■□□□□ 0.31
SCAF4-201ENST00000286835 ANP32BQ92688 251 aaKnown RBP16.96■□□□□ 0.31
SCAF4-201ENST00000286835 SCAPERQ9BY12 1400 aa16.96■□□□□ 0.31
SCAF4-201ENST00000286835 DMRT2Q9Y5R5 561 aa16.95■□□□□ 0.3
SCAF4-201ENST00000286835 AMER1Q5JTC6 1135 aaPredicted RBP16.94■□□□□ 0.3
SCAF4-201ENST00000286835 RSPH6AQ9H0K4 717 aa16.94■□□□□ 0.3
SCAF4-201ENST00000286835 DISP1Q96F81 1524 aa16.94■□□□□ 0.3
SCAF4-201ENST00000286835 TNNQ9UQP3 1299 aa16.94■□□□□ 0.3
SCAF4-201ENST00000286835 EIF3AQ14152 1382 aaKnown RBP16.94■□□□□ 0.3
SCAF4-201ENST00000286835 GLIPR1L2Q4G1C9 344 aa16.93■□□□□ 0.3
SCAF4-201ENST00000286835 SOX12O15370 315 aa16.93■□□□□ 0.3
SCAF4-201ENST00000286835 WWC1Q8IX03 1113 aa16.93■□□□□ 0.3
SCAF4-201ENST00000286835 MYH16Q9H6N6 1097 aa16.93■□□□□ 0.3
SCAF4-201ENST00000286835 PDE3AQ14432 1141 aa16.92■□□□□ 0.3
SCAF4-201ENST00000286835 SLC12A5Q9H2X9 1139 aa16.92■□□□□ 0.3
SCAF4-201ENST00000286835 MBD5Q9P267 1494 aa16.92■□□□□ 0.3
SCAF4-201ENST00000286835 MTHFSP49914 203 aa16.91■□□□□ 0.3
SCAF4-201ENST00000286835 KIAA0556O60303 1618 aa16.91■□□□□ 0.3
SCAF4-201ENST00000286835 TMEM132EQ6IEE7 984 aa16.91■□□□□ 0.3
SCAF4-201ENST00000286835 TSR2Q969E8 191 aaKnown RBP16.91■□□□□ 0.3
SCAF4-201ENST00000286835 C22orf23Q9BZE7 217 aa16.9■□□□□ 0.3
SCAF4-201ENST00000286835 PLEKHH2Q8IVE3 1493 aa16.9■□□□□ 0.3
SCAF4-201ENST00000286835 ZKSCAN2Q63HK3 967 aa16.9■□□□□ 0.3
SCAF4-201ENST00000286835 LMOD2Q6P5Q4 547 aa16.9■□□□□ 0.3
SCAF4-201ENST00000286835 RUNDC1Q96C34 613 aa16.9■□□□□ 0.3
SCAF4-201ENST00000286835 ADAMTS12P58397 1594 aa16.89■□□□□ 0.29
SCAF4-201ENST00000286835 FAM43AQ8N2R8 423 aa16.89■□□□□ 0.29
SCAF4-201ENST00000286835 NUTM2FA1L443 756 aa16.88■□□□□ 0.29
SCAF4-201ENST00000286835 DZIP1LQ8IYY4 767 aaKnown RBP16.88■□□□□ 0.29
SCAF4-201ENST00000286835 EIF4G3O43432 1585 aaKnown RBP16.88■□□□□ 0.29
SCAF4-201ENST00000286835 NKTRP30414 1462 aaKnown RBP16.88■□□□□ 0.29
SCAF4-201ENST00000286835 CCDC141Q6ZP82 1450 aa16.88■□□□□ 0.29
SCAF4-201ENST00000286835 ELL2O00472 640 aaPredicted RBP16.88■□□□□ 0.29
SCAF4-201ENST00000286835 TPRNQ4KMQ1 711 aa16.88■□□□□ 0.29
SCAF4-201ENST00000286835 TBC1D2Q9BYX2 928 aa16.88■□□□□ 0.29
SCAF4-201ENST00000286835 LNPKQ9C0E8 428 aa16.87■□□□□ 0.29
SCAF4-201ENST00000286835 APBB1O00213 710 aa16.87■□□□□ 0.29
SCAF4-201ENST00000286835 PCDHB15Q9Y5E8 787 aa16.87■□□□□ 0.29
SCAF4-201ENST00000286835 ARHGEF12Q9NZN5 1544 aa16.87■□□□□ 0.29
SCAF4-201ENST00000286835 FAM135AQ9P2D6 1515 aa16.86■□□□□ 0.29
SCAF4-201ENST00000286835 HDGFP51858 240 aaKnown RBP16.86■□□□□ 0.29
SCAF4-201ENST00000286835 ATP10BO94823 1461 aa16.86■□□□□ 0.29
SCAF4-201ENST00000286835 TRAK2O60296 914 aa16.85■□□□□ 0.29
SCAF4-201ENST00000286835 RARSP54136 660 aaKnown RBP16.85■□□□□ 0.29
SCAF4-201ENST00000286835 COL17A1Q9UMD9 1497 aaPredicted RBP16.85■□□□□ 0.29
SCAF4-201ENST00000286835 CHMP5Q9NZZ3 219 aa16.85■□□□□ 0.29
SCAF4-201ENST00000286835 BLMP54132 1417 aaPredicted RBP16.84■□□□□ 0.29
SCAF4-201ENST00000286835 GOLGA6L22H0YM25 854 aa16.84■□□□□ 0.29
SCAF4-201ENST00000286835 RLBP1P12271 317 aa16.84■□□□□ 0.29
SCAF4-201ENST00000286835 ADGRL2O95490 1459 aa16.84■□□□□ 0.29
SCAF4-201ENST00000286835 A2MP01023 1474 aa16.84■□□□□ 0.29
SCAF4-201ENST00000286835 ITSN2Q9NZM3 1697 aa16.83■□□□□ 0.29
SCAF4-201ENST00000286835 ZMYM4Q5VZL5 1548 aa16.82■□□□□ 0.28
SCAF4-201ENST00000286835 MCM4P33991 863 aa16.82■□□□□ 0.28
SCAF4-201ENST00000286835 EXOSC9Q06265 439 aaKnown RBP16.82■□□□□ 0.28
SCAF4-201ENST00000286835 PANK2Q9BZ23 570 aa16.82■□□□□ 0.28
SCAF4-201ENST00000286835 ANKRD45Q5TZF3 282 aa16.82■□□□□ 0.28
SCAF4-201ENST00000286835 PBRM1Q86U86 1689 aa16.82■□□□□ 0.28
SCAF4-201ENST00000286835 GGNBP2Q9H3C7 697 aa16.8■□□□□ 0.28
SCAF4-201ENST00000286835 TARBP1Q13395 1621 aaKnown RBP16.8■□□□□ 0.28
SCAF4-201ENST00000286835 GBP4Q96PP9 640 aa16.8■□□□□ 0.28
SCAF4-201ENST00000286835 ARID3AQ99856 593 aa16.8■□□□□ 0.28
SCAF4-201ENST00000286835 VGFO15240 615 aaPredicted RBP16.79■□□□□ 0.28
SCAF4-201ENST00000286835 CARD14Q9BXL6 1004 aa16.79■□□□□ 0.28
SCAF4-201ENST00000286835 ADGRF5Q8IZF2 1346 aa16.79■□□□□ 0.28
SCAF4-201ENST00000286835 IPO8O15397 1037 aaKnown RBP16.78■□□□□ 0.28
SCAF4-201ENST00000286835 CABP2Q9NPB3 220 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms