RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 BCANQ96GW7 911 aa19.59■□□□□ 0.73
CD44-203ENST00000278386 ITGAEP38570 1179 aa19.58■□□□□ 0.72
CD44-203ENST00000278386 SLC26A8Q96RN1 970 aa19.58■□□□□ 0.72
CD44-203ENST00000278386 NKTRP30414 1462 aaKnown RBP19.58■□□□□ 0.72
CD44-203ENST00000278386 PPARGC1BQ86YN6 1023 aaKnown RBP19.57■□□□□ 0.72
CD44-203ENST00000278386 ZFYVE9O95405 1425 aa19.57■□□□□ 0.72
CD44-203ENST00000278386 RIMS2Q9UQ26 1411 aa19.57■□□□□ 0.72
CD44-203ENST00000278386 TMEM94Q12767 1356 aa19.57■□□□□ 0.72
CD44-203ENST00000278386 CHD2O14647 1828 aaKnown RBP19.56■□□□□ 0.72
CD44-203ENST00000278386 PPP1R15AO75807 674 aaPredicted RBP19.56■□□□□ 0.72
CD44-203ENST00000278386 SPHKAPQ2M3C7 1700 aa19.54■□□□□ 0.72
CD44-203ENST00000278386 CHGAP10645 457 aaKnown RBP19.54■□□□□ 0.72
CD44-203ENST00000278386 KCNA6P17658 529 aa19.54■□□□□ 0.72
CD44-203ENST00000278386 PHF23Q9BUL5 403 aaPredicted RBP19.54■□□□□ 0.72
CD44-203ENST00000278386 ROBO1Q9Y6N7 1651 aa19.54■□□□□ 0.72
CD44-203ENST00000278386 PLEKHG1Q9ULL1 1385 aa19.54■□□□□ 0.72
CD44-203ENST00000278386 PROSER2Q86WR7 435 aaPredicted RBP19.52■□□□□ 0.72
CD44-203ENST00000278386 NUP155O75694 1391 aa19.52■□□□□ 0.72
CD44-203ENST00000278386 DIP2AQ14689 1571 aa19.5■□□□□ 0.71
CD44-203ENST00000278386 HDGFP51858 240 aaKnown RBP19.49■□□□□ 0.71
CD44-203ENST00000278386 RBM33Q96EV2 1170 aaKnown RBP19.49■□□□□ 0.71
CD44-203ENST00000278386 MSH6P52701 1360 aa19.47■□□□□ 0.71
CD44-203ENST00000278386 FAM135BQ49AJ0 1406 aa19.47■□□□□ 0.71
CD44-203ENST00000278386 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.46■□□□□ 0.71
CD44-203ENST00000278386 PHLPP1O60346 1717 aa19.45■□□□□ 0.7
CD44-203ENST00000278386 NUTM2DQ5VT03 806 aaPredicted RBP19.45■□□□□ 0.7
CD44-203ENST00000278386 TRPM2O94759 1503 aa19.44■□□□□ 0.7
CD44-203ENST00000278386 RRBP1Q9P2E9 1410 aaKnown RBP19.42■□□□□ 0.7
CD44-203ENST00000278386 ADAMTS13Q76LX8 1427 aa19.42■□□□□ 0.7
CD44-203ENST00000278386 KIF1BO60333 1816 aa19.41■□□□□ 0.7
CD44-203ENST00000278386 CLTCL1P53675 1640 aa19.4■□□□□ 0.7
CD44-203ENST00000278386 NRXN3Q9Y4C0 1643 aa19.4■□□□□ 0.7
CD44-203ENST00000278386 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.39■□□□□ 0.7
CD44-203ENST00000278386 TBX22Q9Y458 520 aa19.39■□□□□ 0.69
CD44-203ENST00000278386 C14orf37Q86TY3 774 aa19.38■□□□□ 0.69
CD44-203ENST00000278386 PIK3R4Q99570 1358 aa19.37■□□□□ 0.69
CD44-203ENST00000278386 SETBP1Q9Y6X0 1596 aa19.36■□□□□ 0.69
CD44-203ENST00000278386 ZNF326Q5BKZ1 582 aaKnown RBP19.36■□□□□ 0.69
CD44-203ENST00000278386 XRN1Q8IZH2 1706 aaKnown RBP19.36■□□□□ 0.69
CD44-203ENST00000278386 NAIPQ13075 1403 aa19.35■□□□□ 0.69
CD44-203ENST00000278386 NCOA3Q9Y6Q9 1424 aa19.35■□□□□ 0.69
CD44-203ENST00000278386 SLAIN2Q9P270 581 aa19.34■□□□□ 0.69
CD44-203ENST00000278386 COL16A1Q07092 1604 aaPredicted RBP19.33■□□□□ 0.69
CD44-203ENST00000278386 NEXMIFQ5QGS0 1516 aa19.33■□□□□ 0.68
CD44-203ENST00000278386 PTPRUQ92729 1446 aa19.32■□□□□ 0.68
CD44-203ENST00000278386 HFM1A2PYH4 1435 aa19.29■□□□□ 0.68
CD44-203ENST00000278386 AMOTL2Q9Y2J4 779 aa19.29■□□□□ 0.68
CD44-203ENST00000278386 AHDC1Q5TGY3 1603 aaPredicted RBP19.29■□□□□ 0.68
CD44-203ENST00000278386 ATF3P18847 181 aa19.28■□□□□ 0.68
CD44-203ENST00000278386 TRIM52Q96A61 297 aa19.28■□□□□ 0.68
CD44-203ENST00000278386 JCADQ9P266 1359 aa19.28■□□□□ 0.68
CD44-203ENST00000278386 CADPS2Q86UW7 1296 aa19.27■□□□□ 0.68
CD44-203ENST00000278386 SHPRHQ149N8 1683 aa19.27■□□□□ 0.67
CD44-203ENST00000278386 NALCNQ8IZF0 1738 aa19.26■□□□□ 0.67
CD44-203ENST00000278386 C19orf44Q9H6X5 657 aa19.26■□□□□ 0.67
CD44-203ENST00000278386 RGS17Q9UGC6 210 aaPredicted RBP19.26■□□□□ 0.67
CD44-203ENST00000278386 SETD1AO15047 1707 aaKnown RBP19.25■□□□□ 0.67
CD44-203ENST00000278386 DCCP43146 1447 aa19.25■□□□□ 0.67
CD44-203ENST00000278386 PPLO60437 1756 aa19.24■□□□□ 0.67
CD44-203ENST00000278386 METP08581 1390 aa19.23■□□□□ 0.67
CD44-203ENST00000278386 NHSL1Q5SYE7 1610 aa19.22■□□□□ 0.67
CD44-203ENST00000278386 ASXL1Q8IXJ9 1541 aa19.21■□□□□ 0.67
CD44-203ENST00000278386 SLC4A1APQ9BWU0 796 aaKnown RBP19.2■□□□□ 0.66
CD44-203ENST00000278386 ADGRL3Q9HAR2 1447 aa19.19■□□□□ 0.66
CD44-203ENST00000278386 LRP6O75581 1613 aa19.19■□□□□ 0.66
CD44-203ENST00000278386 MST1RQ04912 1400 aa19.18■□□□□ 0.66
CD44-203ENST00000278386 POTEAQ6S8J7 498 aa19.18■□□□□ 0.66
CD44-203ENST00000278386 MEX3CQ5U5Q3 659 aaKnown RBP19.17■□□□□ 0.66
CD44-203ENST00000278386 BRINP3Q76B58 766 aa19.17■□□□□ 0.66
CD44-203ENST00000278386 SPATA31A6Q5VVP1 1343 aa19.16■□□□□ 0.66
CD44-203ENST00000278386 PTCH1Q13635 1447 aa19.15■□□□□ 0.66
CD44-203ENST00000278386 IFT172Q9UG01 1749 aa19.14■□□□□ 0.65
CD44-203ENST00000278386 VGFO15240 615 aaPredicted RBP19.13■□□□□ 0.65
CD44-203ENST00000278386 CCDC144AA2RUR9 1427 aa19.11■□□□□ 0.65
CD44-203ENST00000278386 FOXD1Q16676 465 aa19.11■□□□□ 0.65
CD44-203ENST00000278386 RPGRIP1LQ68CZ1 1315 aa19.1■□□□□ 0.65
CD44-203ENST00000278386 SETD5Q9C0A6 1442 aa19.08■□□□□ 0.65
CD44-203ENST00000278386 ROBO2Q9HCK4 1378 aa19.08■□□□□ 0.65
CD44-203ENST00000278386 NUTM2BA6NNL0 878 aaPredicted RBP19.08■□□□□ 0.64
CD44-203ENST00000278386 NUTM2EB1AL46 878 aaPredicted RBP19.08■□□□□ 0.64
CD44-203ENST00000278386 NUTM2AQ8IVF1 878 aaPredicted RBP19.08■□□□□ 0.64
CD44-203ENST00000278386 PRAG1Q86YV5 1406 aa19.08■□□□□ 0.64
CD44-203ENST00000278386 C1orf167Q5SNV9 1468 aa19.07■□□□□ 0.64
CD44-203ENST00000278386 LAMC1P11047 1609 aa19.06■□□□□ 0.64
CD44-203ENST00000278386 KNDC1Q76NI1 1749 aa19.05■□□□□ 0.64
CD44-203ENST00000278386 ZNF772Q68DY9 489 aaPredicted RBP19.05■□□□□ 0.64
CD44-203ENST00000278386 DDX17Q92841 729 aaKnown RBP19.05■□□□□ 0.64
CD44-203ENST00000278386 CDC42BPGQ6DT37 1551 aa19.04■□□□□ 0.64
CD44-203ENST00000278386 SPATA31E1Q6ZUB1 1445 aa19.02■□□□□ 0.64
CD44-203ENST00000278386 RGL3Q3MIN7 710 aa19.02■□□□□ 0.64
CD44-203ENST00000278386 LRRC59Q96AG4 307 aaKnown RBP19.02■□□□□ 0.64
CD44-203ENST00000278386 MPHOSPH9Q99550 1183 aa19.02■□□□□ 0.64
CD44-203ENST00000278386 PNPLA6Q8IY17 1366 aa19.02■□□□□ 0.64
CD44-203ENST00000278386 ADGRF5Q8IZF2 1346 aa19■□□□□ 0.63
CD44-203ENST00000278386 ANKRD30BQ9BXX2 1392 aa19■□□□□ 0.63
CD44-203ENST00000278386 AFF2P51816 1311 aa18.99■□□□□ 0.63
CD44-203ENST00000278386 C8orf37Q96NL8 207 aa18.97■□□□□ 0.63
CD44-203ENST00000278386 ORAI2Q96SN7 254 aa18.97■□□□□ 0.63
CD44-203ENST00000278386 PIK3C2GO75747 1445 aa18.97■□□□□ 0.63
CD44-203ENST00000278386 STK26Q9P289 416 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 126.2 ms