RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 API5Q9BZZ5 524 aaKnown RBP23.5■■□□□ 1.35
UPF1-201ENST00000262803 KIF21BO75037 1637 aa23.49■■□□□ 1.35
UPF1-201ENST00000262803 TRIM34Q9BYJ4 488 aa23.49■■□□□ 1.35
UPF1-201ENST00000262803 FGD5Q6ZNL6 1462 aa23.49■■□□□ 1.35
UPF1-201ENST00000262803 TSR1Q2NL82 804 aaKnown RBP23.49■■□□□ 1.35
UPF1-201ENST00000262803 CCDC47Q96A33 483 aaKnown RBP23.48■■□□□ 1.35
UPF1-201ENST00000262803 NCBP3Q53F19 620 aaKnown RBP23.48■■□□□ 1.35
UPF1-201ENST00000262803 ARID3AQ99856 593 aa23.48■■□□□ 1.35
UPF1-201ENST00000262803 H3BQV1 296 aa23.48■■□□□ 1.35
UPF1-201ENST00000262803 IFFO2Q5TF58 517 aa23.48■■□□□ 1.35
UPF1-201ENST00000262803 GSE1Q14687 1217 aa23.47■■□□□ 1.35
UPF1-201ENST00000262803 FOXD4L5Q5VV16 416 aaPredicted RBP23.47■■□□□ 1.35
UPF1-201ENST00000262803 FOXD4L4Q8WXT5 416 aaPredicted RBP23.47■■□□□ 1.35
UPF1-201ENST00000262803 FAM184AQ8NB25 1140 aa23.47■■□□□ 1.35
UPF1-201ENST00000262803 CUX1P39880 1505 aa23.47■■□□□ 1.35
UPF1-201ENST00000262803 TPM1P09493 284 aa23.47■■□□□ 1.35
UPF1-201ENST00000262803 AAMPQ13685 434 aa23.47■■□□□ 1.35
UPF1-201ENST00000262803 ZNF644Q9H582 1327 aaPredicted RBP23.47■■□□□ 1.35
UPF1-201ENST00000262803 MIA2Q96PC5 1412 aa23.46■■□□□ 1.35
UPF1-201ENST00000262803 SKOR2Q2VWA4 1001 aaPredicted RBP23.46■■□□□ 1.35
UPF1-201ENST00000262803 HSP90AB4PQ58FF6 505 aa23.46■■□□□ 1.35
UPF1-201ENST00000262803 VPS53Q5VIR6 699 aa23.45■■□□□ 1.34
UPF1-201ENST00000262803 A0A0U1RQG5 324 aaPredicted RBP23.45■■□□□ 1.34
UPF1-201ENST00000262803 CTDP1Q9Y5B0 961 aaPredicted RBP23.45■■□□□ 1.34
UPF1-201ENST00000262803 MINK1Q8N4C8 1332 aaPredicted RBP23.45■■□□□ 1.34
UPF1-201ENST00000262803 CNTLNQ9NXG0 1405 aa23.45■■□□□ 1.34
UPF1-201ENST00000262803 LRRC9Q6ZRR7 1453 aa23.44■■□□□ 1.34
UPF1-201ENST00000262803 RILPL2Q969X0 211 aa23.44■■□□□ 1.34
UPF1-201ENST00000262803 DIAPH3Q9NSV4 1193 aa23.44■■□□□ 1.34
UPF1-201ENST00000262803 DDX19BQ9UMR2 479 aa23.44■■□□□ 1.34
UPF1-201ENST00000262803 GAPVD1Q14C86 1478 aa23.44■■□□□ 1.34
UPF1-201ENST00000262803 DDX49Q9Y6V7 483 aaKnown RBP23.43■■□□□ 1.34
UPF1-201ENST00000262803 TPD52L1Q16890 204 aaPredicted RBP23.43■■□□□ 1.34
UPF1-201ENST00000262803 DIAPH1O60610 1272 aaKnown RBP23.43■■□□□ 1.34
UPF1-201ENST00000262803 REC8O95072 547 aa23.43■■□□□ 1.34
UPF1-201ENST00000262803 ZKSCAN1P17029 563 aaPredicted RBP23.42■■□□□ 1.34
UPF1-201ENST00000262803 TRIM29Q14134 588 aa23.42■■□□□ 1.34
UPF1-201ENST00000262803 TCEAL9Q9UHQ7 104 aa23.42■■□□□ 1.34
UPF1-201ENST00000262803 DZIP1LQ8IYY4 767 aaKnown RBP23.41■■□□□ 1.34
UPF1-201ENST00000262803 C9orf78Q9NZ63 289 aaPredicted RBP23.4■■□□□ 1.34
UPF1-201ENST00000262803 RNF20Q5VTR2 975 aa23.4■■□□□ 1.34
UPF1-201ENST00000262803 RAD54L2Q9Y4B4 1467 aa23.4■■□□□ 1.34
UPF1-201ENST00000262803 HOOK1Q9UJC3 728 aaKnown RBP23.39■■□□□ 1.34
UPF1-201ENST00000262803 PRM3Q9NNZ6 103 aa23.39■■□□□ 1.33
UPF1-201ENST00000262803 PSME1Q06323 249 aa23.38■■□□□ 1.33
UPF1-201ENST00000262803 RIPK4P57078 832 aa23.37■■□□□ 1.33
UPF1-201ENST00000262803 CCDC70Q6NSX1 233 aa23.37■■□□□ 1.33
UPF1-201ENST00000262803 ANKRD20A12PQ8NF67 263 aa23.37■■□□□ 1.33
UPF1-201ENST00000262803 MEX3CQ5U5Q3 659 aaKnown RBP23.36■■□□□ 1.33
UPF1-201ENST00000262803 RUNDC1Q96C34 613 aa23.36■■□□□ 1.33
UPF1-201ENST00000262803 GOLGA6L19H0YKK7 550 aa23.35■■□□□ 1.33
UPF1-201ENST00000262803 IFIT2P09913 472 aaKnown RBP23.35■■□□□ 1.33
UPF1-201ENST00000262803 TRDNQ13061 729 aa23.35■■□□□ 1.33
UPF1-201ENST00000262803 GNAI1P63096 354 aa23.34■■□□□ 1.33
UPF1-201ENST00000262803 ANKRD50Q9ULJ7 1429 aa23.33■■□□□ 1.33
UPF1-201ENST00000262803 ATF3P18847 181 aa23.33■■□□□ 1.33
UPF1-201ENST00000262803 G3BP1Q13283 466 aaKnown RBP eCLIP23.32■■□□□ 1.328e-7■■□□□ 14.1
UPF1-201ENST00000262803 FOXD4L6Q3SYB3 417 aaPredicted RBP23.32■■□□□ 1.32
UPF1-201ENST00000262803 FOXD4L3Q6VB84 417 aaPredicted RBP23.32■■□□□ 1.32
UPF1-201ENST00000262803 NCOA2Q15596 1464 aa23.32■■□□□ 1.32
UPF1-201ENST00000262803 VPS37DQ86XT2 251 aa23.32■■□□□ 1.32
UPF1-201ENST00000262803 MSH5O43196 834 aa23.31■■□□□ 1.32
UPF1-201ENST00000262803 RAPGEF4Q8WZA2 1011 aa23.31■■□□□ 1.32
UPF1-201ENST00000262803 CASKIN1Q8WXD9 1431 aa23.31■■□□□ 1.32
UPF1-201ENST00000262803 ERC2O15083 957 aa23.31■■□□□ 1.32
UPF1-201ENST00000262803 ERICH2A1L162 156 aa23.3■■□□□ 1.32
UPF1-201ENST00000262803 BECN2A8MW95 431 aa23.3■■□□□ 1.32
UPF1-201ENST00000262803 AEBP2Q6ZN18 517 aaPredicted RBP23.3■■□□□ 1.32
UPF1-201ENST00000262803 BRD4O60885 1362 aaPredicted RBP23.3■■□□□ 1.32
UPF1-201ENST00000262803 CHMP5Q9NZZ3 219 aa23.29■■□□□ 1.32
UPF1-201ENST00000262803 FYCO1Q9BQS8 1478 aa23.29■■□□□ 1.32
UPF1-201ENST00000262803 CYB5RLQ6IPT4 315 aa23.29■■□□□ 1.32
UPF1-201ENST00000262803 CREBRFQ8IUR6 639 aa23.29■■□□□ 1.32
UPF1-201ENST00000262803 IPO7O95373 1038 aaKnown RBP23.29■■□□□ 1.32
UPF1-201ENST00000262803 CPLX1O14810 134 aa23.28■■□□□ 1.32
UPF1-201ENST00000262803 HMGB2P26583 209 aaKnown RBP23.28■■□□□ 1.32
UPF1-201ENST00000262803 ARAP1Q96P48 1450 aa23.27■■□□□ 1.32
UPF1-201ENST00000262803 ADAMTS8Q9UP79 889 aa23.26■■□□□ 1.31
UPF1-201ENST00000262803 RRBP1Q9P2E9 1410 aaKnown RBP23.26■■□□□ 1.31
UPF1-201ENST00000262803 GPS2Q13227 327 aa23.26■■□□□ 1.31
UPF1-201ENST00000262803 EIF2S2P20042 333 aaKnown RBP23.25■■□□□ 1.31
UPF1-201ENST00000262803 PANK1Q8TE04 598 aa23.25■■□□□ 1.31
UPF1-201ENST00000262803 PES1O00541 588 aaKnown RBP23.24■■□□□ 1.31
UPF1-201ENST00000262803 LNPKQ9C0E8 428 aa23.24■■□□□ 1.31
UPF1-201ENST00000262803 RBM33Q96EV2 1170 aaKnown RBP23.24■■□□□ 1.31
UPF1-201ENST00000262803 RSPH6AQ9H0K4 717 aa23.24■■□□□ 1.31
UPF1-201ENST00000262803 GPRASP1Q5JY77 1395 aa23.22■■□□□ 1.31
UPF1-201ENST00000262803 FAM69CQ0P6D2 419 aa23.22■■□□□ 1.31
UPF1-201ENST00000262803 NECTIN2Q92692 538 aa23.22■■□□□ 1.31
UPF1-201ENST00000262803 SAFBQ15424 915 aaKnown RBP eCLIP23.22■■□□□ 1.31
UPF1-201ENST00000262803 CDCA7LQ96GN5 454 aa23.22■■□□□ 1.31
UPF1-201ENST00000262803 SCAPERQ9BY12 1400 aa23.21■■□□□ 1.31
UPF1-201ENST00000262803 GGNBP2Q9H3C7 697 aa23.21■■□□□ 1.31
UPF1-201ENST00000262803 ANO2Q9NQ90 1003 aa23.21■■□□□ 1.31
UPF1-201ENST00000262803 FKBP5Q13451 457 aaPredicted RBP23.21■■□□□ 1.31
UPF1-201ENST00000262803 INTS3Q68E01 1043 aaKnown RBP23.21■■□□□ 1.31
UPF1-201ENST00000262803 C22orf23Q9BZE7 217 aa23.2■■□□□ 1.31
UPF1-201ENST00000262803 APPP05067 770 aa23.2■■□□□ 1.3
UPF1-201ENST00000262803 CCDC43Q96MW1 224 aaKnown RBP23.2■■□□□ 1.3
UPF1-201ENST00000262803 AMER1Q5JTC6 1135 aaPredicted RBP23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms