RNA–Protein interactions for RNA: ENST00000258962.4

SRSF1-201, Transcript of serine and arginine rich splicing factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRSF1, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF1-201ENST00000258962 SLIT1O75093 1534 aa25.03■■□□□ 1.6
SRSF1-201ENST00000258962 SCAF11Q99590 1463 aaKnown RBP25.02■■□□□ 1.6
SRSF1-201ENST00000258962 MED14O60244 1454 aa25.01■■□□□ 1.59
SRSF1-201ENST00000258962 SPHKAPQ2M3C7 1700 aa25■■□□□ 1.59
SRSF1-201ENST00000258962 NEURL4Q96JN8 1562 aa24.99■■□□□ 1.59
SRSF1-201ENST00000258962 L3MBTL2Q969R5 705 aa24.99■■□□□ 1.59
SRSF1-201ENST00000258962 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.96■■□□□ 1.59
SRSF1-201ENST00000258962 TMEM131LA2VDJ0 1609 aa24.96■■□□□ 1.59
SRSF1-201ENST00000258962 CERKQ8TCT0 537 aa24.96■■□□□ 1.59
SRSF1-201ENST00000258962 BCANQ96GW7 911 aa24.96■■□□□ 1.59
SRSF1-201ENST00000258962 ZNF335Q9H4Z2 1342 aaPredicted RBP24.96■■□□□ 1.59
SRSF1-201ENST00000258962 TRPM2O94759 1503 aa24.95■■□□□ 1.59
SRSF1-201ENST00000258962 ZNF326Q5BKZ1 582 aaKnown RBP24.95■■□□□ 1.58
SRSF1-201ENST00000258962 RIMS2Q9UQ26 1411 aa24.94■■□□□ 1.58
SRSF1-201ENST00000258962 IQGAP1P46940 1657 aa24.93■■□□□ 1.58
SRSF1-201ENST00000258962 MYO5BQ9ULV0 1848 aa24.92■■□□□ 1.58
SRSF1-201ENST00000258962 CCDC144AA2RUR9 1427 aa24.91■■□□□ 1.58
SRSF1-201ENST00000258962 ZFYVE9O95405 1425 aa24.9■■□□□ 1.58
SRSF1-201ENST00000258962 NUTM2DQ5VT03 806 aaPredicted RBP24.89■■□□□ 1.57
SRSF1-201ENST00000258962 CLTCL1P53675 1640 aa24.89■■□□□ 1.57
SRSF1-201ENST00000258962 SENP3Q9H4L4 574 aaPredicted RBP24.87■■□□□ 1.57
SRSF1-201ENST00000258962 SLC26A8Q96RN1 970 aa24.86■■□□□ 1.57
SRSF1-201ENST00000258962 LTBP4Q8N2S1 1624 aa24.86■■□□□ 1.57
SRSF1-201ENST00000258962 PLEKHG1Q9ULL1 1385 aa24.85■■□□□ 1.57
SRSF1-201ENST00000258962 KIF1BO60333 1816 aa24.84■■□□□ 1.57
SRSF1-201ENST00000258962 NBPF8Q3BBV2 869 aa24.83■■□□□ 1.57
SRSF1-201ENST00000258962 FBXO41Q8TF61 875 aa24.81■■□□□ 1.56
SRSF1-201ENST00000258962 DIEXFQ68CQ4 756 aaKnown RBP24.8■■□□□ 1.56
SRSF1-201ENST00000258962 RPGRIP1LQ68CZ1 1315 aa24.8■■□□□ 1.56
SRSF1-201ENST00000258962 TBX22Q9Y458 520 aa24.78■■□□□ 1.56
SRSF1-201ENST00000258962 CPS1P31327 1500 aa24.78■■□□□ 1.56
SRSF1-201ENST00000258962 VGFO15240 615 aaPredicted RBP24.77■■□□□ 1.56
SRSF1-201ENST00000258962 RGL3Q3MIN7 710 aa24.77■■□□□ 1.56
SRSF1-201ENST00000258962 SPATA31E1Q6ZUB1 1445 aa24.76■■□□□ 1.55
SRSF1-201ENST00000258962 KCNA6P17658 529 aa24.76■■□□□ 1.55
SRSF1-201ENST00000258962 ILDR1Q86SU0 546 aaPredicted RBP24.76■■□□□ 1.55
SRSF1-201ENST00000258962 IQSEC2Q5JU85 1478 aa24.74■■□□□ 1.55
SRSF1-201ENST00000258962 NEXMIFQ5QGS0 1516 aa24.72■■□□□ 1.55
SRSF1-201ENST00000258962 RALGAPBQ86X10 1494 aa24.7■■□□□ 1.54
SRSF1-201ENST00000258962 DCAF11Q8TEB1 546 aa24.7■■□□□ 1.54
SRSF1-201ENST00000258962 ADAMTS13Q76LX8 1427 aa24.69■■□□□ 1.54
SRSF1-201ENST00000258962 HIRIP3Q9BW71 556 aaPredicted RBP24.68■■□□□ 1.54
SRSF1-201ENST00000258962 TRPM1Q7Z4N2 1603 aa24.68■■□□□ 1.54
SRSF1-201ENST00000258962 PROSER2Q86WR7 435 aaPredicted RBP24.67■■□□□ 1.54
SRSF1-201ENST00000258962 PRAG1Q86YV5 1406 aa24.66■■□□□ 1.54
SRSF1-201ENST00000258962 DIP2AQ14689 1571 aa24.66■■□□□ 1.54
SRSF1-201ENST00000258962 STRCP1A6NGW2 1772 aa24.66■■□□□ 1.54
SRSF1-201ENST00000258962 UBAP1LF5GYI3 381 aa24.66■■□□□ 1.54
SRSF1-201ENST00000258962 KDM2AQ9Y2K7 1162 aa24.66■■□□□ 1.54
SRSF1-201ENST00000258962 LRRC7Q96NW7 1537 aa24.65■■□□□ 1.54
SRSF1-201ENST00000258962 PIK3R4Q99570 1358 aa24.65■■□□□ 1.54
SRSF1-201ENST00000258962 SETBP1Q9Y6X0 1596 aa24.64■■□□□ 1.54
SRSF1-201ENST00000258962 HSPA5P11021 654 aaKnown RBP24.64■■□□□ 1.53
SRSF1-201ENST00000258962 IFT172Q9UG01 1749 aa24.63■■□□□ 1.53
SRSF1-201ENST00000258962 TOM1O60784 492 aa24.61■■□□□ 1.53
SRSF1-201ENST00000258962 EIF4G2P78344 907 aaKnown RBP eCLIP24.61■■□□□ 1.53
SRSF1-201ENST00000258962 AMOTL2Q9Y2J4 779 aa24.61■■□□□ 1.53
SRSF1-201ENST00000258962 PPLO60437 1756 aa24.61■■□□□ 1.53
SRSF1-201ENST00000258962 ADGRF5Q8IZF2 1346 aa24.6■■□□□ 1.53
SRSF1-201ENST00000258962 NKTRP30414 1462 aaKnown RBP24.59■■□□□ 1.53
SRSF1-201ENST00000258962 TMEM94Q12767 1356 aa24.59■■□□□ 1.53
SRSF1-201ENST00000258962 CHD2O14647 1828 aaKnown RBP24.58■■□□□ 1.53
SRSF1-201ENST00000258962 NRXN3Q9Y4C0 1643 aa24.58■■□□□ 1.53
SRSF1-201ENST00000258962 METP08581 1390 aa24.58■■□□□ 1.52
SRSF1-201ENST00000258962 NWD1Q149M9 1564 aa24.58■■□□□ 1.52
SRSF1-201ENST00000258962 RBM33Q96EV2 1170 aaKnown RBP24.57■■□□□ 1.52
SRSF1-201ENST00000258962 LAMC1P11047 1609 aa24.56■■□□□ 1.52
SRSF1-201ENST00000258962 C14orf37Q86TY3 774 aa24.55■■□□□ 1.52
SRSF1-201ENST00000258962 SCAF1Q9H7N4 1312 aaKnown RBP24.54■■□□□ 1.52
SRSF1-201ENST00000258962 PTPRUQ92729 1446 aa24.54■■□□□ 1.52
SRSF1-201ENST00000258962 USP47Q96K76 1375 aa24.53■■□□□ 1.52
SRSF1-201ENST00000258962 ALKQ9UM73 1620 aa24.53■■□□□ 1.52
SRSF1-201ENST00000258962 PIP4K2BP78356 416 aa24.52■■□□□ 1.52
SRSF1-201ENST00000258962 STAC3Q96MF2 364 aa24.52■■□□□ 1.52
SRSF1-201ENST00000258962 MYOM2P54296 1465 aa24.51■■□□□ 1.51
SRSF1-201ENST00000258962 GPRASP1Q5JY77 1395 aa24.51■■□□□ 1.51
SRSF1-201ENST00000258962 ROCK2O75116 1388 aaKnown RBP24.5■■□□□ 1.51
SRSF1-201ENST00000258962 MSH6P52701 1360 aa24.49■■□□□ 1.51
SRSF1-201ENST00000258962 KIAA1210Q9ULL0 1709 aa24.49■■□□□ 1.51
SRSF1-201ENST00000258962 NCOA3Q9Y6Q9 1424 aa24.48■■□□□ 1.51
SRSF1-201ENST00000258962 CARD11Q9BXL7 1154 aa24.48■■□□□ 1.51
SRSF1-201ENST00000258962 PIK3C2GO75747 1445 aa24.48■■□□□ 1.51
SRSF1-201ENST00000258962 C14orf93Q9H972 538 aaKnown RBP24.46■■□□□ 1.51
SRSF1-201ENST00000258962 XIRP1Q702N8 1843 aaKnown RBP24.46■■□□□ 1.51
SRSF1-201ENST00000258962 NBPF1Q3BBV0 1214 aa24.45■■□□□ 1.51
SRSF1-201ENST00000258962 WASHC2AQ641Q2 1341 aa24.45■■□□□ 1.5
SRSF1-201ENST00000258962 NRXN1Q9ULB1 1477 aa24.45■■□□□ 1.5
SRSF1-201ENST00000258962 DDX10Q13206 875 aaKnown RBP24.45■■□□□ 1.5
SRSF1-201ENST00000258962 MIER1Q8N108 512 aa24.45■■□□□ 1.5
SRSF1-201ENST00000258962 C19orf44Q9H6X5 657 aa24.45■■□□□ 1.5
SRSF1-201ENST00000258962 CFAP70Q5T0N1 1121 aa24.44■■□□□ 1.5
SRSF1-201ENST00000258962 TMEM132EQ6IEE7 984 aa24.44■■□□□ 1.5
SRSF1-201ENST00000258962 XRN1Q8IZH2 1706 aaKnown RBP24.43■■□□□ 1.5
SRSF1-201ENST00000258962 STK26Q9P289 416 aa24.43■■□□□ 1.5
SRSF1-201ENST00000258962 C11orf95C9JLR9 678 aaPredicted RBP24.42■■□□□ 1.5
SRSF1-201ENST00000258962 SETD1AO15047 1707 aaKnown RBP24.42■■□□□ 1.5
SRSF1-201ENST00000258962 ATF3P18847 181 aa24.41■■□□□ 1.5
SRSF1-201ENST00000258962 CCDC7Q96M83 1385 aa24.41■■□□□ 1.5
SRSF1-201ENST00000258962 CADPS2Q86UW7 1296 aa24.4■■□□□ 1.5
SRSF1-201ENST00000258962 LRPPRCP42704 1394 aaKnown RBP24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms