RNA–Protein interactions for RNA: ENST00000253754.7

PDLIM4-201, Transcript of PDZ and LIM domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM4, Length 2,282 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-201ENST00000253754 SENP3-EIF4A1A0A087X0R7 540 aa25.46■■□□□ 1.67
PDLIM4-201ENST00000253754 ARHGEF40Q8TER5 1519 aa25.45■■□□□ 1.66
PDLIM4-201ENST00000253754 ZC3H13Q5T200 1668 aaKnown RBP25.44■■□□□ 1.66
PDLIM4-201ENST00000253754 SIGLEC1Q9BZZ2 1709 aa25.44■■□□□ 1.66
PDLIM4-201ENST00000253754 AGLP35573 1532 aa25.43■■□□□ 1.66
PDLIM4-201ENST00000253754 KIF1BO60333 1816 aa25.42■■□□□ 1.66
PDLIM4-201ENST00000253754 TMC1Q8TDI8 760 aa25.42■■□□□ 1.66
PDLIM4-201ENST00000253754 PNISRQ8TF01 805 aaKnown RBP25.41■■□□□ 1.66
PDLIM4-201ENST00000253754 MADDQ8WXG6 1647 aa25.4■■□□□ 1.66
PDLIM4-201ENST00000253754 CHGAP10645 457 aaKnown RBP25.39■■□□□ 1.66
PDLIM4-201ENST00000253754 ARHGAP31Q2M1Z3 1444 aa25.39■■□□□ 1.65
PDLIM4-201ENST00000253754 MYBBP1AQ9BQG0 1328 aaKnown RBP25.38■■□□□ 1.65
PDLIM4-201ENST00000253754 NOS1P29475 1434 aa25.37■■□□□ 1.65
PDLIM4-201ENST00000253754 RALBP1Q15311 655 aa25.36■■□□□ 1.65
PDLIM4-201ENST00000253754 PER1O15534 1290 aaPredicted RBP25.35■■□□□ 1.65
PDLIM4-201ENST00000253754 PPP6R1Q9UPN7 881 aa25.35■■□□□ 1.65
PDLIM4-201ENST00000253754 NEURL4Q96JN8 1562 aa25.34■■□□□ 1.65
PDLIM4-201ENST00000253754 STAC3Q96MF2 364 aa25.34■■□□□ 1.65
PDLIM4-201ENST00000253754 MROH2AA6NES4 1674 aa25.34■■□□□ 1.65
PDLIM4-201ENST00000253754 TMF1P82094 1093 aa25.33■■□□□ 1.65
PDLIM4-201ENST00000253754 BRD4O60885 1362 aaPredicted RBP25.32■■□□□ 1.64
PDLIM4-201ENST00000253754 KTN1Q86UP2 1357 aaKnown RBP25.32■■□□□ 1.64
PDLIM4-201ENST00000253754 SYNMO15061 1565 aa25.32■■□□□ 1.64
PDLIM4-201ENST00000253754 FBXO31Q5XUX0 539 aaPredicted RBP25.31■■□□□ 1.64
PDLIM4-201ENST00000253754 PANK3Q9H999 370 aa25.31■■□□□ 1.64
PDLIM4-201ENST00000253754 PARD3Q8TEW0 1356 aa25.31■■□□□ 1.64
PDLIM4-201ENST00000253754 CLTCQ00610 1675 aaKnown RBP25.3■■□□□ 1.64
PDLIM4-201ENST00000253754 ADGRB3O60242 1522 aa25.29■■□□□ 1.64
PDLIM4-201ENST00000253754 CC2D1BQ5T0F9 858 aaKnown RBP25.29■■□□□ 1.64
PDLIM4-201ENST00000253754 PREX1Q8TCU6 1659 aa25.28■■□□□ 1.64
PDLIM4-201ENST00000253754 LRPPRCP42704 1394 aaKnown RBP25.28■■□□□ 1.64
PDLIM4-201ENST00000253754 IDI1Q13907 227 aa25.28■■□□□ 1.64
PDLIM4-201ENST00000253754 PIK3C2BO00750 1634 aa25.27■■□□□ 1.64
PDLIM4-201ENST00000253754 IQGAP1P46940 1657 aa25.27■■□□□ 1.64
PDLIM4-201ENST00000253754 ESF1Q9H501 851 aaKnown RBP25.26■■□□□ 1.63
PDLIM4-201ENST00000253754 SMG6Q86US8 1419 aaKnown RBP25.26■■□□□ 1.63
PDLIM4-201ENST00000253754 ADGRF5Q8IZF2 1346 aa25.26■■□□□ 1.63
PDLIM4-201ENST00000253754 PLPPR3Q6T4P5 718 aa25.25■■□□□ 1.63
PDLIM4-201ENST00000253754 SLC52A1Q9NWF4 448 aa25.25■■□□□ 1.63
PDLIM4-201ENST00000253754 NLRP13Q86W25 1043 aa25.25■■□□□ 1.63
PDLIM4-201ENST00000253754 IFT172Q9UG01 1749 aa25.24■■□□□ 1.63
PDLIM4-201ENST00000253754 SCAF11Q99590 1463 aaKnown RBP25.23■■□□□ 1.63
PDLIM4-201ENST00000253754 MYOM2P54296 1465 aa25.23■■□□□ 1.63
PDLIM4-201ENST00000253754 NUDCQ9Y266 331 aa25.22■■□□□ 1.63
PDLIM4-201ENST00000253754 ERVK-7P63135 1459 aa25.21■■□□□ 1.63
PDLIM4-201ENST00000253754 CFAP70Q5T0N1 1121 aa25.2■■□□□ 1.62
PDLIM4-201ENST00000253754 PPLO60437 1756 aa25.18■■□□□ 1.62
PDLIM4-201ENST00000253754 RPGRIP1LQ68CZ1 1315 aa25.18■■□□□ 1.62
PDLIM4-201ENST00000253754 NUTM2DQ5VT03 806 aaPredicted RBP25.17■■□□□ 1.62
PDLIM4-201ENST00000253754 ZMYM3Q14202 1370 aa25.17■■□□□ 1.62
PDLIM4-201ENST00000253754 ERICH6BQ5W0A0 696 aa25.16■■□□□ 1.62
PDLIM4-201ENST00000253754 PPP4R2Q9NY27 417 aa25.16■■□□□ 1.62
PDLIM4-201ENST00000253754 MYO5BQ9ULV0 1848 aa25.15■■□□□ 1.62
PDLIM4-201ENST00000253754 SALL2Q9Y467 1007 aaPredicted RBP25.15■■□□□ 1.62
PDLIM4-201ENST00000253754 NRXN1Q9ULB1 1477 aa25.14■■□□□ 1.62
PDLIM4-201ENST00000253754 KIAA1210Q9ULL0 1709 aa25.14■■□□□ 1.62
PDLIM4-201ENST00000253754 TMEM131LA2VDJ0 1609 aa25.12■■□□□ 1.61
PDLIM4-201ENST00000253754 SPATA31D1Q6ZQQ2 1576 aa25.12■■□□□ 1.61
PDLIM4-201ENST00000253754 STAG3Q9UJ98 1225 aa25.12■■□□□ 1.61
PDLIM4-201ENST00000253754 VGFO15240 615 aaPredicted RBP25.11■■□□□ 1.61
PDLIM4-201ENST00000253754 B4GALNT3Q6L9W6 998 aa25.11■■□□□ 1.61
PDLIM4-201ENST00000253754 EIF3AQ14152 1382 aaKnown RBP25.11■■□□□ 1.61
PDLIM4-201ENST00000253754 CEBPAP49715 358 aaPredicted RBP25.1■■□□□ 1.61
PDLIM4-201ENST00000253754 NEXMIFQ5QGS0 1516 aa25.1■■□□□ 1.61
PDLIM4-201ENST00000253754 PIK3C2GO75747 1445 aa25.09■■□□□ 1.61
PDLIM4-201ENST00000253754 KNSTRNQ9Y448 316 aa25.08■■□□□ 1.61
PDLIM4-201ENST00000253754 CDCA8Q53HL2 280 aa25.07■■□□□ 1.6
PDLIM4-201ENST00000253754 C14orf93Q9H972 538 aaKnown RBP25.06■■□□□ 1.6
PDLIM4-201ENST00000253754 RNF123Q5XPI4 1314 aa25.06■■□□□ 1.6
PDLIM4-201ENST00000253754 AMER1Q5JTC6 1135 aaPredicted RBP25.06■■□□□ 1.6
PDLIM4-201ENST00000253754 SENP3Q9H4L4 574 aaPredicted RBP25.06■■□□□ 1.6
PDLIM4-201ENST00000253754 RBM19Q9Y4C8 960 aaKnown RBP25.06■■□□□ 1.6
PDLIM4-201ENST00000253754 MYOM1P52179 1685 aa25.05■■□□□ 1.6
PDLIM4-201ENST00000253754 TMEM132EQ6IEE7 984 aa25.02■■□□□ 1.6
PDLIM4-201ENST00000253754 PPP2R1AP30153 589 aa25■■□□□ 1.59
PDLIM4-201ENST00000253754 ZFYVE9O95405 1425 aa25■■□□□ 1.59
PDLIM4-201ENST00000253754 BLMP54132 1417 aaPredicted RBP25■■□□□ 1.59
PDLIM4-201ENST00000253754 A2ML1A8K2U0 1454 aa24.99■■□□□ 1.59
PDLIM4-201ENST00000253754 TNRQ92752 1358 aa24.99■■□□□ 1.59
PDLIM4-201ENST00000253754 KDM5AP29375 1690 aaKnown RBP24.99■■□□□ 1.59
PDLIM4-201ENST00000253754 SETBP1Q9Y6X0 1596 aa24.98■■□□□ 1.59
PDLIM4-201ENST00000253754 ASXL1Q8IXJ9 1541 aa24.97■■□□□ 1.59
PDLIM4-201ENST00000253754 CDCA7LQ96GN5 454 aa24.97■■□□□ 1.59
PDLIM4-201ENST00000253754 TRAK1Q9UPV9 953 aa24.97■■□□□ 1.59
PDLIM4-201ENST00000253754 FER1L4A9Z1Z3 1794 aa24.96■■□□□ 1.59
PDLIM4-201ENST00000253754 ADAMTS8Q9UP79 889 aa24.96■■□□□ 1.59
PDLIM4-201ENST00000253754 ADGRB1O14514 1584 aa24.95■■□□□ 1.59
PDLIM4-201ENST00000253754 CENPJQ9HC77 1338 aaPredicted RBP24.92■■□□□ 1.58
PDLIM4-201ENST00000253754 C3P01024 1663 aa24.91■■□□□ 1.58
PDLIM4-201ENST00000253754 RIMS2Q9UQ26 1411 aa24.91■■□□□ 1.58
PDLIM4-201ENST00000253754 CARD14Q9BXL6 1004 aa24.91■■□□□ 1.58
PDLIM4-201ENST00000253754 INSRP06213 1382 aa24.9■■□□□ 1.58
PDLIM4-201ENST00000253754 MYO3AQ8NEV4 1616 aa24.9■■□□□ 1.58
PDLIM4-201ENST00000253754 PDE3BQ13370 1112 aa24.9■■□□□ 1.58
PDLIM4-201ENST00000253754 RCAN3Q9UKA8 241 aa24.89■■□□□ 1.58
PDLIM4-201ENST00000253754 RRP1P56182 461 aaKnown RBP24.88■■□□□ 1.57
PDLIM4-201ENST00000253754 RIMS1Q86UR5 1692 aaKnown RBP24.87■■□□□ 1.57
PDLIM4-201ENST00000253754 NPC1L1Q9UHC9 1359 aa24.87■■□□□ 1.57
PDLIM4-201ENST00000253754 SBNO2Q9Y2G9 1366 aa24.86■■□□□ 1.57
PDLIM4-201ENST00000253754 WDR43Q15061 677 aaKnown RBP eCLIP24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms