RNA–Protein interactions for RNA: ENST00000243326.9

RIF1-201, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 15,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-201ENST00000243326 BICD2Q8TD16 824 aa9.23□□□□□ -0.93
RIF1-201ENST00000243326 VPS53Q5VIR6 699 aa9.23□□□□□ -0.93
RIF1-201ENST00000243326 CEBPZQ03701 1054 aaKnown RBP9.23□□□□□ -0.93
RIF1-201ENST00000243326 PCMTD1Q96MG8 357 aaPredicted RBP9.22□□□□□ -0.93
RIF1-201ENST00000243326 STK31Q9BXU1 1019 aa9.22□□□□□ -0.93
RIF1-201ENST00000243326 BECN2A8MW95 431 aa9.22□□□□□ -0.93
RIF1-201ENST00000243326 KIF7Q2M1P5 1343 aa9.22□□□□□ -0.93
RIF1-201ENST00000243326 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.22□□□□□ -0.93
RIF1-201ENST00000243326 FMNL2Q96PY5 1086 aa9.22□□□□□ -0.93
RIF1-201ENST00000243326 FMN1Q68DA7 1419 aa9.22□□□□□ -0.93
RIF1-201ENST00000243326 PHF14O94880 888 aa9.22□□□□□ -0.93
RIF1-201ENST00000243326 MINK1Q8N4C8 1332 aaPredicted RBP9.22□□□□□ -0.93
RIF1-201ENST00000243326 CHMP4CQ96CF2 233 aa9.22□□□□□ -0.93
RIF1-201ENST00000243326 ZFP91Q96JP5 570 aaPredicted RBP9.21□□□□□ -0.93
RIF1-201ENST00000243326 CCDC18Q5T9S5 1454 aa9.21□□□□□ -0.93
RIF1-201ENST00000243326 UQCRHLA0A096LP55 91 aa9.21□□□□□ -0.94
RIF1-201ENST00000243326 UQCRHP07919 91 aa9.21□□□□□ -0.94
RIF1-201ENST00000243326 FAM184AQ8NB25 1140 aa9.21□□□□□ -0.94
RIF1-201ENST00000243326 ZKSCAN2Q63HK3 967 aa9.21□□□□□ -0.94
RIF1-201ENST00000243326 PRM3Q9NNZ6 103 aa9.21□□□□□ -0.94
RIF1-201ENST00000243326 CBX1P83916 185 aa9.21□□□□□ -0.94
RIF1-201ENST00000243326 PDZRN3Q9UPQ7 1066 aa9.2□□□□□ -0.94
RIF1-201ENST00000243326 FHAD1B1AJZ9 1412 aa9.2□□□□□ -0.94
RIF1-201ENST00000243326 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.2□□□□□ -0.94
RIF1-201ENST00000243326 TPM3P06753 285 aa9.2□□□□□ -0.94
RIF1-201ENST00000243326 MTMR7Q9Y216 660 aa9.2□□□□□ -0.94
RIF1-201ENST00000243326 RBM25P49756 843 aaKnown RBP9.2□□□□□ -0.94
RIF1-201ENST00000243326 FAM177A1Q8N128 213 aaPredicted RBP9.19□□□□□ -0.94
RIF1-201ENST00000243326 PLCD4Q9BRC7 762 aa9.19□□□□□ -0.94
RIF1-201ENST00000243326 TMX1Q9H3N1 280 aa9.19□□□□□ -0.94
RIF1-201ENST00000243326 TDRD9Q8NDG6 1382 aaKnown RBP9.19□□□□□ -0.94
RIF1-201ENST00000243326 SKOR2Q2VWA4 1001 aaPredicted RBP9.19□□□□□ -0.94
RIF1-201ENST00000243326 C20orf194Q5TEA3 1177 aa9.19□□□□□ -0.94
RIF1-201ENST00000243326 RAD21O60216 631 aa9.19□□□□□ -0.94
RIF1-201ENST00000243326 CCDC7Q96M83 1385 aa9.19□□□□□ -0.94
RIF1-201ENST00000243326 KANK1Q14678 1352 aa9.18□□□□□ -0.94
RIF1-201ENST00000243326 HTATSF1O43719 755 aaKnown RBP9.18□□□□□ -0.94
RIF1-201ENST00000243326 AEBP1Q8IUX7 1158 aa9.18□□□□□ -0.94
RIF1-201ENST00000243326 DZIP1LQ8IYY4 767 aaKnown RBP9.18□□□□□ -0.94
RIF1-201ENST00000243326 NUTM2GQ5VZR2 741 aa9.18□□□□□ -0.94
RIF1-201ENST00000243326 HMMRO75330 724 aa9.18□□□□□ -0.94
RIF1-201ENST00000243326 TSR2Q969E8 191 aaKnown RBP9.18□□□□□ -0.94
RIF1-201ENST00000243326 E9PSI1 815 aa9.18□□□□□ -0.94
RIF1-201ENST00000243326 CSPP1Q1MSJ5 1256 aa9.17□□□□□ -0.94
RIF1-201ENST00000243326 GPATCH3Q96I76 525 aa9.17□□□□□ -0.94
RIF1-201ENST00000243326 ZNF644Q9H582 1327 aaPredicted RBP9.17□□□□□ -0.94
RIF1-201ENST00000243326 SETQ01105 290 aaPredicted RBP9.17□□□□□ -0.94
RIF1-201ENST00000243326 PDE3BQ13370 1112 aa9.17□□□□□ -0.94
RIF1-201ENST00000243326 KIF3BO15066 747 aa9.17□□□□□ -0.94
RIF1-201ENST00000243326 RIPK4P57078 832 aa9.17□□□□□ -0.94
RIF1-201ENST00000243326 STK3Q13188 491 aa9.17□□□□□ -0.94
RIF1-201ENST00000243326 SAMD1Q6SPF0 538 aaPredicted RBP9.17□□□□□ -0.94
RIF1-201ENST00000243326 CNTLNQ9NXG0 1405 aa9.17□□□□□ -0.94
RIF1-201ENST00000243326 ADAMTS8Q9UP79 889 aa9.17□□□□□ -0.94
RIF1-201ENST00000243326 SMC3Q9UQE7 1217 aa9.16□□□□□ -0.94
RIF1-201ENST00000243326 DDX54Q8TDD1 881 aaKnown RBP9.16□□□□□ -0.94
RIF1-201ENST00000243326 DIAPH3Q9NSV4 1193 aa9.16□□□□□ -0.94
RIF1-201ENST00000243326 ATP2B1P20020 1258 aa9.16□□□□□ -0.94
RIF1-201ENST00000243326 FYB1O15117 783 aa9.16□□□□□ -0.94
RIF1-201ENST00000243326 AMPHP49418 695 aa9.16□□□□□ -0.94
RIF1-201ENST00000243326 FIBPO43427 364 aa9.16□□□□□ -0.94
RIF1-201ENST00000243326 SPAG9O60271 1321 aaKnown RBP9.15□□□□□ -0.94
RIF1-201ENST00000243326 TSPY26PQ9H489 355 aa9.15□□□□□ -0.94
RIF1-201ENST00000243326 SASS6Q6UVJ0 657 aa9.15□□□□□ -0.94
RIF1-201ENST00000243326 CCDC39Q9UFE4 941 aa9.15□□□□□ -0.94
RIF1-201ENST00000243326 BRPF1P55201 1214 aaPredicted RBP9.15□□□□□ -0.94
RIF1-201ENST00000243326 SPDYE4A6NLX3 237 aa9.15□□□□□ -0.94
RIF1-201ENST00000243326 MRE11P49959 708 aa9.15□□□□□ -0.94
RIF1-201ENST00000243326 APPP05067 770 aa9.15□□□□□ -0.95
RIF1-201ENST00000243326 BACH2Q9BYV9 841 aa9.15□□□□□ -0.95
RIF1-201ENST00000243326 LARP6Q9BRS8 491 aaKnown RBP9.14□□□□□ -0.95
RIF1-201ENST00000243326 SMC2O95347 1197 aa9.14□□□□□ -0.95
RIF1-201ENST00000243326 MARCH6O60337 910 aa9.14□□□□□ -0.95
RIF1-201ENST00000243326 NGDNQ8NEJ9 315 aaKnown RBP9.14□□□□□ -0.95
RIF1-201ENST00000243326 MNS1Q8NEH6 495 aa9.14□□□□□ -0.95
RIF1-201ENST00000243326 WDR97A6NE52 1622 aa9.14□□□□□ -0.95
RIF1-201ENST00000243326 GRPEL1Q9HAV7 217 aa9.14□□□□□ -0.95
RIF1-201ENST00000243326 TRIM5Q9C035 493 aa9.14□□□□□ -0.95
RIF1-201ENST00000243326 GGNBP2Q9H3C7 697 aa9.14□□□□□ -0.95
RIF1-201ENST00000243326 XPCQ01831 940 aaPredicted RBP9.14□□□□□ -0.95
RIF1-201ENST00000243326 AIMP1Q12904 312 aaKnown RBP9.13□□□□□ -0.95
RIF1-201ENST00000243326 FAM193AP78312 1265 aa9.13□□□□□ -0.95
RIF1-201ENST00000243326 TPM2P07951 284 aa9.13□□□□□ -0.95
RIF1-201ENST00000243326 TMEM132EQ6IEE7 984 aa9.13□□□□□ -0.95
RIF1-201ENST00000243326 RBM27Q9P2N5 1060 aaKnown RBP9.12□□□□□ -0.95
RIF1-201ENST00000243326 NAP1L1P55209 391 aaKnown RBP9.12□□□□□ -0.95
RIF1-201ENST00000243326 SRRTQ9BXP5 876 aaKnown RBP9.12□□□□□ -0.95
RIF1-201ENST00000243326 CABP2Q9NPB3 220 aa9.12□□□□□ -0.95
RIF1-201ENST00000243326 CGNL1Q0VF96 1302 aa9.12□□□□□ -0.95
RIF1-201ENST00000243326 FAM177BA6PVY3 158 aa9.12□□□□□ -0.95
RIF1-201ENST00000243326 NEK4P51957 841 aa9.12□□□□□ -0.95
RIF1-201ENST00000243326 ERCC6Q03468 1493 aa9.11□□□□□ -0.95
RIF1-201ENST00000243326 NOB1Q9ULX3 412 aaKnown RBP9.11□□□□□ -0.95
RIF1-201ENST00000243326 EXOSC9Q06265 439 aaKnown RBP9.11□□□□□ -0.95
RIF1-201ENST00000243326 SMARCA5O60264 1052 aaPredicted RBP9.11□□□□□ -0.95
RIF1-201ENST00000243326 HSP90AB3PQ58FF7 597 aa9.11□□□□□ -0.95
RIF1-201ENST00000243326 ANKRD30AQ9BXX3 1397 aa9.11□□□□□ -0.95
RIF1-201ENST00000243326 BAZ1AQ9NRL2 1556 aaPredicted RBP9.1□□□□□ -0.95
RIF1-201ENST00000243326 TSR1Q2NL82 804 aaKnown RBP9.1□□□□□ -0.95
RIF1-201ENST00000243326 CFAP44Q96MT7 982 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms