RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 TMEM2Q9UHN6 1383 aa14.71□□□□□ -0.06
HMGCL-201ENST00000235958 KDM5AP29375 1690 aaKnown RBP14.69□□□□□ -0.06
HMGCL-201ENST00000235958 ZNF142P52746 1687 aaPredicted RBP14.69□□□□□ -0.06
HMGCL-201ENST00000235958 VGFO15240 615 aaPredicted RBP14.69□□□□□ -0.06
HMGCL-201ENST00000235958 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.69□□□□□ -0.06
HMGCL-201ENST00000235958 ADGRB3O60242 1522 aa14.69□□□□□ -0.06
HMGCL-201ENST00000235958 NCKAP5LQ9HCH0 1330 aa14.68□□□□□ -0.06
HMGCL-201ENST00000235958 RIMS2Q9UQ26 1411 aa14.67□□□□□ -0.06
HMGCL-201ENST00000235958 STAC3Q96MF2 364 aa14.67□□□□□ -0.06
HMGCL-201ENST00000235958 SENP3Q9H4L4 574 aaPredicted RBP14.67□□□□□ -0.06
HMGCL-201ENST00000235958 ARHGAP23Q9P227 1491 aa14.66□□□□□ -0.06
HMGCL-201ENST00000235958 PPP1R15AO75807 674 aaPredicted RBP14.66□□□□□ -0.06
HMGCL-201ENST00000235958 TIMELESSQ9UNS1 1208 aa14.66□□□□□ -0.06
HMGCL-201ENST00000235958 NEURL4Q96JN8 1562 aa14.65□□□□□ -0.06
HMGCL-201ENST00000235958 BCANQ96GW7 911 aa14.65□□□□□ -0.06
HMGCL-201ENST00000235958 SLIT1O75093 1534 aa14.65□□□□□ -0.06
HMGCL-201ENST00000235958 ZFYVE9O95405 1425 aa14.65□□□□□ -0.06
HMGCL-201ENST00000235958 ADGRF5Q8IZF2 1346 aa14.65□□□□□ -0.06
HMGCL-201ENST00000235958 TONSLQ96HA7 1378 aa14.64□□□□□ -0.07
HMGCL-201ENST00000235958 NEXMIFQ5QGS0 1516 aa14.61□□□□□ -0.07
HMGCL-201ENST00000235958 SCAF11Q99590 1463 aaKnown RBP14.61□□□□□ -0.07
HMGCL-201ENST00000235958 PPLO60437 1756 aa14.6□□□□□ -0.07
HMGCL-201ENST00000235958 SLC26A8Q96RN1 970 aa14.6□□□□□ -0.07
HMGCL-201ENST00000235958 DMRT2Q9Y5R5 561 aa14.6□□□□□ -0.07
HMGCL-201ENST00000235958 STRCQ7RTU9 1775 aa14.6□□□□□ -0.07
HMGCL-201ENST00000235958 PLEKHG1Q9ULL1 1385 aa14.59□□□□□ -0.07
HMGCL-201ENST00000235958 NBPF8Q3BBV2 869 aa14.58□□□□□ -0.08
HMGCL-201ENST00000235958 TBX22Q9Y458 520 aa14.58□□□□□ -0.08
HMGCL-201ENST00000235958 MED14O60244 1454 aa14.57□□□□□ -0.08
HMGCL-201ENST00000235958 CFAP70Q5T0N1 1121 aa14.57□□□□□ -0.08
HMGCL-201ENST00000235958 C14orf93Q9H972 538 aaKnown RBP14.57□□□□□ -0.08
HMGCL-201ENST00000235958 IFT172Q9UG01 1749 aa14.57□□□□□ -0.08
HMGCL-201ENST00000235958 NPHP4O75161 1426 aaPredicted RBP14.57□□□□□ -0.08
HMGCL-201ENST00000235958 MYOM2P54296 1465 aa14.55□□□□□ -0.08
HMGCL-201ENST00000235958 POLR1AO95602 1720 aaPredicted RBP14.55□□□□□ -0.08
HMGCL-201ENST00000235958 NBPF1Q3BBV0 1214 aa14.54□□□□□ -0.08
HMGCL-201ENST00000235958 TMEM132EQ6IEE7 984 aa14.54□□□□□ -0.08
HMGCL-201ENST00000235958 NRXN1Q9ULB1 1477 aa14.53□□□□□ -0.08
HMGCL-201ENST00000235958 ADAMTS13Q76LX8 1427 aa14.53□□□□□ -0.08
HMGCL-201ENST00000235958 PIK3C2GO75747 1445 aa14.52□□□□□ -0.08
HMGCL-201ENST00000235958 PRAG1Q86YV5 1406 aa14.52□□□□□ -0.08
HMGCL-201ENST00000235958 IQGAP1P46940 1657 aa14.51□□□□□ -0.09
HMGCL-201ENST00000235958 ALKQ9UM73 1620 aa14.51□□□□□ -0.09
HMGCL-201ENST00000235958 SETBP1Q9Y6X0 1596 aa14.51□□□□□ -0.09
HMGCL-201ENST00000235958 METP08581 1390 aa14.5□□□□□ -0.09
HMGCL-201ENST00000235958 ZEB1P37275 1124 aaPredicted RBP14.49□□□□□ -0.09
HMGCL-201ENST00000235958 STK26Q9P289 416 aa14.49□□□□□ -0.09
HMGCL-201ENST00000235958 AMOTL2Q9Y2J4 779 aa14.49□□□□□ -0.09
HMGCL-201ENST00000235958 NRXN3Q9Y4C0 1643 aa14.48□□□□□ -0.09
HMGCL-201ENST00000235958 KCNA6P17658 529 aa14.48□□□□□ -0.09
HMGCL-201ENST00000235958 PIK3R4Q99570 1358 aa14.46□□□□□ -0.1
HMGCL-201ENST00000235958 ZNF335Q9H4Z2 1342 aaPredicted RBP14.45□□□□□ -0.1
HMGCL-201ENST00000235958 TRAK1Q9UPV9 953 aa14.45□□□□□ -0.1
HMGCL-201ENST00000235958 PTPRUQ92729 1446 aa14.44□□□□□ -0.1
HMGCL-201ENST00000235958 CARD11Q9BXL7 1154 aa14.44□□□□□ -0.1
HMGCL-201ENST00000235958 ROCK2O75116 1388 aaKnown RBP14.44□□□□□ -0.1
HMGCL-201ENST00000235958 KIAA1210Q9ULL0 1709 aa14.44□□□□□ -0.1
HMGCL-201ENST00000235958 DIP2AQ14689 1571 aa14.43□□□□□ -0.1
HMGCL-201ENST00000235958 CHD2O14647 1828 aaKnown RBP14.43□□□□□ -0.1
HMGCL-201ENST00000235958 PROSER2Q86WR7 435 aaPredicted RBP14.43□□□□□ -0.1
HMGCL-201ENST00000235958 ABCC11Q96J66 1382 aa14.43□□□□□ -0.1
HMGCL-201ENST00000235958 SETD1AO15047 1707 aaKnown RBP14.43□□□□□ -0.1
HMGCL-201ENST00000235958 YTHDC2Q9H6S0 1430 aaKnown RBP14.42□□□□□ -0.1
HMGCL-201ENST00000235958 TRPM1Q7Z4N2 1603 aa14.42□□□□□ -0.1
HMGCL-201ENST00000235958 LRPPRCP42704 1394 aaKnown RBP14.42□□□□□ -0.1
HMGCL-201ENST00000235958 WAPLQ7Z5K2 1190 aa14.41□□□□□ -0.1
HMGCL-201ENST00000235958 SIRT1Q96EB6 747 aa14.41□□□□□ -0.1
HMGCL-201ENST00000235958 LAMC1P11047 1609 aa14.41□□□□□ -0.1
HMGCL-201ENST00000235958 ADGRB1O14514 1584 aa14.4□□□□□ -0.1
HMGCL-201ENST00000235958 RBM33Q96EV2 1170 aaKnown RBP14.4□□□□□ -0.1
HMGCL-201ENST00000235958 RALGAPBQ86X10 1494 aa14.39□□□□□ -0.11
HMGCL-201ENST00000235958 GPRASP1Q5JY77 1395 aa14.39□□□□□ -0.11
HMGCL-201ENST00000235958 POGKQ9P215 609 aa14.39□□□□□ -0.11
HMGCL-201ENST00000235958 ASXL1Q8IXJ9 1541 aa14.39□□□□□ -0.11
HMGCL-201ENST00000235958 ROBO2Q9HCK4 1378 aa14.38□□□□□ -0.11
HMGCL-201ENST00000235958 STRCP1A6NGW2 1772 aa14.38□□□□□ -0.11
HMGCL-201ENST00000235958 PRAM1Q96QH2 718 aa14.38□□□□□ -0.11
HMGCL-201ENST00000235958 SAFB2Q14151 953 aaKnown RBP eCLIP14.37□□□□□ -0.11
HMGCL-201ENST00000235958 TECPR2O15040 1411 aa14.35□□□□□ -0.11
HMGCL-201ENST00000235958 PLEKHH1Q9ULM0 1364 aa14.34□□□□□ -0.11
HMGCL-201ENST00000235958 ST20-MTHFSA0A0A6YYL1 179 aa14.34□□□□□ -0.11
HMGCL-201ENST00000235958 EIF4G2P78344 907 aaKnown RBP eCLIP14.34□□□□□ -0.11
HMGCL-201ENST00000235958 ILDR1Q86SU0 546 aaPredicted RBP14.34□□□□□ -0.11
HMGCL-201ENST00000235958 XRN1Q8IZH2 1706 aaKnown RBP14.34□□□□□ -0.11
HMGCL-201ENST00000235958 FAM135BQ49AJ0 1406 aa14.33□□□□□ -0.11
HMGCL-201ENST00000235958 C14orf37Q86TY3 774 aa14.33□□□□□ -0.12
HMGCL-201ENST00000235958 CENPJQ9HC77 1338 aaPredicted RBP14.33□□□□□ -0.12
HMGCL-201ENST00000235958 LTBP4Q8N2S1 1624 aa14.33□□□□□ -0.12
HMGCL-201ENST00000235958 TMEM94Q12767 1356 aa14.33□□□□□ -0.12
HMGCL-201ENST00000235958 NWD1Q149M9 1564 aa14.32□□□□□ -0.12
HMGCL-201ENST00000235958 HSPA5P11021 654 aaKnown RBP14.32□□□□□ -0.12
HMGCL-201ENST00000235958 HIRIP3Q9BW71 556 aaPredicted RBP14.32□□□□□ -0.12
HMGCL-201ENST00000235958 C19orf44Q9H6X5 657 aa14.32□□□□□ -0.12
HMGCL-201ENST00000235958 USP47Q96K76 1375 aa14.32□□□□□ -0.12
HMGCL-201ENST00000235958 NKTRP30414 1462 aaKnown RBP14.31□□□□□ -0.12
HMGCL-201ENST00000235958 LRRC7Q96NW7 1537 aa14.31□□□□□ -0.12
HMGCL-201ENST00000235958 DLC1Q96QB1 1528 aa14.31□□□□□ -0.12
HMGCL-201ENST00000235958 MINK1Q8N4C8 1332 aaPredicted RBP14.31□□□□□ -0.12
HMGCL-201ENST00000235958 PTCH1Q13635 1447 aa14.31□□□□□ -0.12
HMGCL-201ENST00000235958 CPS1P31327 1500 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms