RNA–Protein interactions for RNA: ENST00000216211.8

UPK3A-201, Transcript of uroplakin 3A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene UPK3A, Length 1,051 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-201ENST00000216211 SENP3Q9H4L4 574 aaPredicted RBP22.99■■□□□ 1.27
UPK3A-201ENST00000216211 ZFYVE9O95405 1425 aa22.97■■□□□ 1.27
UPK3A-201ENST00000216211 SOCS7O14512 581 aa22.96■■□□□ 1.27
UPK3A-201ENST00000216211 KCNA6P17658 529 aa22.95■■□□□ 1.26
UPK3A-201ENST00000216211 NWD1Q149M9 1564 aa22.95■■□□□ 1.26
UPK3A-201ENST00000216211 BCANQ96GW7 911 aa22.95■■□□□ 1.26
UPK3A-201ENST00000216211 RIMS2Q9UQ26 1411 aa22.95■■□□□ 1.26
UPK3A-201ENST00000216211 CHD2O14647 1828 aaKnown RBP22.94■■□□□ 1.26
UPK3A-201ENST00000216211 NUP155O75694 1391 aa22.93■■□□□ 1.26
UPK3A-201ENST00000216211 TMEM94Q12767 1356 aa22.93■■□□□ 1.26
UPK3A-201ENST00000216211 CHGAP10645 457 aaKnown RBP22.93■■□□□ 1.26
UPK3A-201ENST00000216211 PLEKHG1Q9ULL1 1385 aa22.91■■□□□ 1.26
UPK3A-201ENST00000216211 PPP1R15AO75807 674 aaPredicted RBP22.91■■□□□ 1.26
UPK3A-201ENST00000216211 PROSER2Q86WR7 435 aaPredicted RBP22.9■■□□□ 1.26
UPK3A-201ENST00000216211 RBM33Q96EV2 1170 aaKnown RBP22.9■■□□□ 1.26
UPK3A-201ENST00000216211 SPHKAPQ2M3C7 1700 aa22.89■■□□□ 1.26
UPK3A-201ENST00000216211 NKTRP30414 1462 aaKnown RBP22.89■■□□□ 1.25
UPK3A-201ENST00000216211 HDGFP51858 240 aaKnown RBP22.87■■□□□ 1.25
UPK3A-201ENST00000216211 NUTM2DQ5VT03 806 aaPredicted RBP22.86■■□□□ 1.25
UPK3A-201ENST00000216211 ROBO1Q9Y6N7 1651 aa22.85■■□□□ 1.25
UPK3A-201ENST00000216211 RRBP1Q9P2E9 1410 aaKnown RBP22.84■■□□□ 1.25
UPK3A-201ENST00000216211 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.84■■□□□ 1.25
UPK3A-201ENST00000216211 FAM135BQ49AJ0 1406 aa22.82■■□□□ 1.24
UPK3A-201ENST00000216211 DIP2AQ14689 1571 aa22.81■■□□□ 1.24
UPK3A-201ENST00000216211 ADAMTS13Q76LX8 1427 aa22.81■■□□□ 1.24
UPK3A-201ENST00000216211 TBX22Q9Y458 520 aa22.8■■□□□ 1.24
UPK3A-201ENST00000216211 MSH6P52701 1360 aa22.79■■□□□ 1.24
UPK3A-201ENST00000216211 PHF23Q9BUL5 403 aaPredicted RBP22.79■■□□□ 1.24
UPK3A-201ENST00000216211 NAIPQ13075 1403 aa22.76■■□□□ 1.23
UPK3A-201ENST00000216211 CLTCL1P53675 1640 aa22.75■■□□□ 1.23
UPK3A-201ENST00000216211 TRPM2O94759 1503 aa22.75■■□□□ 1.23
UPK3A-201ENST00000216211 NRXN3Q9Y4C0 1643 aa22.75■■□□□ 1.23
UPK3A-201ENST00000216211 KIF1BO60333 1816 aa22.74■■□□□ 1.23
UPK3A-201ENST00000216211 PHLPP1O60346 1717 aa22.74■■□□□ 1.23
UPK3A-201ENST00000216211 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.73■■□□□ 1.23
UPK3A-201ENST00000216211 PIK3R4Q99570 1358 aa22.72■■□□□ 1.23
UPK3A-201ENST00000216211 SLAIN2Q9P270 581 aa22.71■■□□□ 1.23
UPK3A-201ENST00000216211 ZNF326Q5BKZ1 582 aaKnown RBP22.7■■□□□ 1.22
UPK3A-201ENST00000216211 PTPRUQ92729 1446 aa22.7■■□□□ 1.22
UPK3A-201ENST00000216211 SETBP1Q9Y6X0 1596 aa22.69■■□□□ 1.22
UPK3A-201ENST00000216211 NCOA3Q9Y6Q9 1424 aa22.69■■□□□ 1.22
UPK3A-201ENST00000216211 C14orf37Q86TY3 774 aa22.68■■□□□ 1.22
UPK3A-201ENST00000216211 NEXMIFQ5QGS0 1516 aa22.67■■□□□ 1.22
UPK3A-201ENST00000216211 AMOTL2Q9Y2J4 779 aa22.67■■□□□ 1.22
UPK3A-201ENST00000216211 XRN1Q8IZH2 1706 aaKnown RBP22.67■■□□□ 1.22
UPK3A-201ENST00000216211 HFM1A2PYH4 1435 aa22.66■■□□□ 1.22
UPK3A-201ENST00000216211 TRIM52Q96A61 297 aa22.65■■□□□ 1.22
UPK3A-201ENST00000216211 RGS17Q9UGC6 210 aaPredicted RBP22.63■■□□□ 1.21
UPK3A-201ENST00000216211 COL16A1Q07092 1604 aaPredicted RBP22.63■■□□□ 1.21
UPK3A-201ENST00000216211 C19orf44Q9H6X5 657 aa22.62■■□□□ 1.21
UPK3A-201ENST00000216211 ATF3P18847 181 aa22.6■■□□□ 1.21
UPK3A-201ENST00000216211 CADPS2Q86UW7 1296 aa22.6■■□□□ 1.21
UPK3A-201ENST00000216211 METP08581 1390 aa22.6■■□□□ 1.21
UPK3A-201ENST00000216211 SLC4A1APQ9BWU0 796 aaKnown RBP22.57■■□□□ 1.2
UPK3A-201ENST00000216211 SETD1AO15047 1707 aaKnown RBP22.57■■□□□ 1.2
UPK3A-201ENST00000216211 AHDC1Q5TGY3 1603 aaPredicted RBP22.57■■□□□ 1.2
UPK3A-201ENST00000216211 PPLO60437 1756 aa22.56■■□□□ 1.2
UPK3A-201ENST00000216211 JCADQ9P266 1359 aa22.56■■□□□ 1.2
UPK3A-201ENST00000216211 NALCNQ8IZF0 1738 aa22.54■■□□□ 1.2
UPK3A-201ENST00000216211 DCCP43146 1447 aa22.54■■□□□ 1.2
UPK3A-201ENST00000216211 SHPRHQ149N8 1683 aa22.52■■□□□ 1.2
UPK3A-201ENST00000216211 FOXD1Q16676 465 aa22.5■■□□□ 1.19
UPK3A-201ENST00000216211 POTEAQ6S8J7 498 aa22.5■■□□□ 1.19
UPK3A-201ENST00000216211 BRINP3Q76B58 766 aa22.5■■□□□ 1.19
UPK3A-201ENST00000216211 MST1RQ04912 1400 aa22.49■■□□□ 1.19
UPK3A-201ENST00000216211 ASXL1Q8IXJ9 1541 aa22.49■■□□□ 1.19
UPK3A-201ENST00000216211 VGFO15240 615 aaPredicted RBP22.49■■□□□ 1.19
UPK3A-201ENST00000216211 NHSL1Q5SYE7 1610 aa22.49■■□□□ 1.19
UPK3A-201ENST00000216211 ADGRL3Q9HAR2 1447 aa22.48■■□□□ 1.19
UPK3A-201ENST00000216211 LRP6O75581 1613 aa22.47■■□□□ 1.19
UPK3A-201ENST00000216211 RPGRIP1LQ68CZ1 1315 aa22.47■■□□□ 1.19
UPK3A-201ENST00000216211 SPATA31A6Q5VVP1 1343 aa22.44■■□□□ 1.18
UPK3A-201ENST00000216211 IFT172Q9UG01 1749 aa22.44■■□□□ 1.18
UPK3A-201ENST00000216211 PTCH1Q13635 1447 aa22.43■■□□□ 1.18
UPK3A-201ENST00000216211 CCDC144AA2RUR9 1427 aa22.41■■□□□ 1.18
UPK3A-201ENST00000216211 ROBO2Q9HCK4 1378 aa22.41■■□□□ 1.18
UPK3A-201ENST00000216211 MEX3CQ5U5Q3 659 aaKnown RBP22.4■■□□□ 1.18
UPK3A-201ENST00000216211 MPHOSPH9Q99550 1183 aa22.4■■□□□ 1.18
UPK3A-201ENST00000216211 DDX17Q92841 729 aaKnown RBP22.38■■□□□ 1.17
UPK3A-201ENST00000216211 SETD5Q9C0A6 1442 aa22.38■■□□□ 1.17
UPK3A-201ENST00000216211 C1orf167Q5SNV9 1468 aa22.37■■□□□ 1.17
UPK3A-201ENST00000216211 RGL3Q3MIN7 710 aa22.37■■□□□ 1.17
UPK3A-201ENST00000216211 PRAG1Q86YV5 1406 aa22.37■■□□□ 1.17
UPK3A-201ENST00000216211 ADGRF5Q8IZF2 1346 aa22.36■■□□□ 1.17
UPK3A-201ENST00000216211 NUTM2BA6NNL0 878 aaPredicted RBP22.36■■□□□ 1.17
UPK3A-201ENST00000216211 NUTM2EB1AL46 878 aaPredicted RBP22.36■■□□□ 1.17
UPK3A-201ENST00000216211 NUTM2AQ8IVF1 878 aaPredicted RBP22.36■■□□□ 1.17
UPK3A-201ENST00000216211 SPATA31E1Q6ZUB1 1445 aa22.36■■□□□ 1.17
UPK3A-201ENST00000216211 LAMC1P11047 1609 aa22.33■■□□□ 1.17
UPK3A-201ENST00000216211 LRRC59Q96AG4 307 aaKnown RBP22.32■■□□□ 1.16
UPK3A-201ENST00000216211 KNDC1Q76NI1 1749 aa22.31■■□□□ 1.16
UPK3A-201ENST00000216211 ANKRD30BQ9BXX2 1392 aa22.3■■□□□ 1.16
UPK3A-201ENST00000216211 ZNF772Q68DY9 489 aaPredicted RBP22.3■■□□□ 1.16
UPK3A-201ENST00000216211 ORAI2Q96SN7 254 aa22.3■■□□□ 1.16
UPK3A-201ENST00000216211 PNPLA6Q8IY17 1366 aa22.29■■□□□ 1.16
UPK3A-201ENST00000216211 CDC42BPGQ6DT37 1551 aa22.29■■□□□ 1.16
UPK3A-201ENST00000216211 STK26Q9P289 416 aa22.27■■□□□ 1.16
UPK3A-201ENST00000216211 PIK3C2GO75747 1445 aa22.26■■□□□ 1.15
UPK3A-201ENST00000216211 ACIN1Q9UKV3 1341 aaKnown RBP22.25■■□□□ 1.15
UPK3A-201ENST00000216211 LRPPRCP42704 1394 aaKnown RBP22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms