RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 RICTORQ6R327 1708 aa11.17□□□□□ -0.62
VAMP3-201ENST00000054666 SYNMO15061 1565 aa11.17□□□□□ -0.62
VAMP3-201ENST00000054666 GLI2P10070 1586 aa11.17□□□□□ -0.62
VAMP3-201ENST00000054666 CAMSAP1Q5T5Y3 1602 aa11.17□□□□□ -0.62
VAMP3-201ENST00000054666 PNISRQ8TF01 805 aaKnown RBP11.16□□□□□ -0.62
VAMP3-201ENST00000054666 ZC3H13Q5T200 1668 aaKnown RBP11.16□□□□□ -0.62
VAMP3-201ENST00000054666 SLC24A1O60721 1099 aa11.16□□□□□ -0.62
VAMP3-201ENST00000054666 RAPGEF3O95398 923 aa11.15□□□□□ -0.62
VAMP3-201ENST00000054666 PANK3Q9H999 370 aa11.15□□□□□ -0.62
VAMP3-201ENST00000054666 KDM5AP29375 1690 aaKnown RBP11.15□□□□□ -0.62
VAMP3-201ENST00000054666 LRPPRCP42704 1394 aaKnown RBP11.15□□□□□ -0.62
VAMP3-201ENST00000054666 RIMBP3CA6NJZ7 1639 aa11.15□□□□□ -0.63
VAMP3-201ENST00000054666 RIMBP3BA6NNM3 1639 aa11.15□□□□□ -0.63
VAMP3-201ENST00000054666 RIMBP3Q9UFD9 1639 aa11.15□□□□□ -0.63
VAMP3-201ENST00000054666 CHGAP10645 457 aaKnown RBP11.15□□□□□ -0.63
VAMP3-201ENST00000054666 NRXN1Q9ULB1 1477 aa11.15□□□□□ -0.63
VAMP3-201ENST00000054666 PER1O15534 1290 aaPredicted RBP11.14□□□□□ -0.63
VAMP3-201ENST00000054666 ERICH6BQ5W0A0 696 aa11.14□□□□□ -0.63
VAMP3-201ENST00000054666 CYB5RLQ6IPT4 315 aa11.14□□□□□ -0.63
VAMP3-201ENST00000054666 SMG6Q86US8 1419 aaKnown RBP11.14□□□□□ -0.63
VAMP3-201ENST00000054666 NOS1P29475 1434 aa11.13□□□□□ -0.63
VAMP3-201ENST00000054666 SETBP1Q9Y6X0 1596 aa11.13□□□□□ -0.63
VAMP3-201ENST00000054666 CC2D1BQ5T0F9 858 aaKnown RBP11.13□□□□□ -0.63
VAMP3-201ENST00000054666 ADGRF5Q8IZF2 1346 aa11.13□□□□□ -0.63
VAMP3-201ENST00000054666 PPLO60437 1756 aa11.13□□□□□ -0.63
VAMP3-201ENST00000054666 CFAP65Q6ZU64 1925 aaKnown RBP11.12□□□□□ -0.63
VAMP3-201ENST00000054666 CFAP70Q5T0N1 1121 aa11.12□□□□□ -0.63
VAMP3-201ENST00000054666 NUDCQ9Y266 331 aa11.12□□□□□ -0.63
VAMP3-201ENST00000054666 KNSTRNQ9Y448 316 aa11.12□□□□□ -0.63
VAMP3-201ENST00000054666 DIP2BQ9P265 1576 aa11.11□□□□□ -0.63
VAMP3-201ENST00000054666 MYO3AQ8NEV4 1616 aa11.11□□□□□ -0.63
VAMP3-201ENST00000054666 ZMYM4Q5VZL5 1548 aa11.11□□□□□ -0.63
VAMP3-201ENST00000054666 MYOM1P52179 1685 aa11.11□□□□□ -0.63
VAMP3-201ENST00000054666 RPGRIP1LQ68CZ1 1315 aa11.11□□□□□ -0.63
VAMP3-201ENST00000054666 PIK3C2GO75747 1445 aa11.1□□□□□ -0.63
VAMP3-201ENST00000054666 ARHGAP31Q2M1Z3 1444 aa11.1□□□□□ -0.63
VAMP3-201ENST00000054666 IRX6P78412 446 aaPredicted RBP11.1□□□□□ -0.63
VAMP3-201ENST00000054666 PIK3C2BO00750 1634 aa11.1□□□□□ -0.63
VAMP3-201ENST00000054666 YEATS2Q9ULM3 1422 aa11.1□□□□□ -0.63
VAMP3-201ENST00000054666 ASXL1Q8IXJ9 1541 aa11.09□□□□□ -0.63
VAMP3-201ENST00000054666 SBNO2Q9Y2G9 1366 aa11.09□□□□□ -0.63
VAMP3-201ENST00000054666 SIGLEC1Q9BZZ2 1709 aa11.09□□□□□ -0.63
VAMP3-201ENST00000054666 INSRP06213 1382 aa11.08□□□□□ -0.64
VAMP3-201ENST00000054666 FAM69CQ0P6D2 419 aa11.08□□□□□ -0.64
VAMP3-201ENST00000054666 ERVK-7P63135 1459 aa11.08□□□□□ -0.64
VAMP3-201ENST00000054666 CENPJQ9HC77 1338 aaPredicted RBP11.07□□□□□ -0.64
VAMP3-201ENST00000054666 TSHZ2Q9NRE2 1034 aa11.07□□□□□ -0.64
VAMP3-201ENST00000054666 PPP4R2Q9NY27 417 aa11.07□□□□□ -0.64
VAMP3-201ENST00000054666 NPC1L1Q9UHC9 1359 aa11.06□□□□□ -0.64
VAMP3-201ENST00000054666 TSPOAP1O95153 1857 aa11.06□□□□□ -0.64
VAMP3-201ENST00000054666 QRICH2Q9H0J4 1663 aa11.06□□□□□ -0.64
VAMP3-201ENST00000054666 BLMP54132 1417 aaPredicted RBP11.05□□□□□ -0.64
VAMP3-201ENST00000054666 PREX1Q8TCU6 1659 aa11.05□□□□□ -0.64
VAMP3-201ENST00000054666 NEXMIFQ5QGS0 1516 aa11.05□□□□□ -0.64
VAMP3-201ENST00000054666 ADGRB1O14514 1584 aa11.05□□□□□ -0.64
VAMP3-201ENST00000054666 C14orf93Q9H972 538 aaKnown RBP11.05□□□□□ -0.64
VAMP3-201ENST00000054666 VGFO15240 615 aaPredicted RBP11.04□□□□□ -0.64
VAMP3-201ENST00000054666 AMER1Q5JTC6 1135 aaPredicted RBP11.04□□□□□ -0.64
VAMP3-201ENST00000054666 SLC52A1Q9NWF4 448 aa11.04□□□□□ -0.64
VAMP3-201ENST00000054666 REREQ9P2R6 1566 aa11.04□□□□□ -0.64
VAMP3-201ENST00000054666 PDE3BQ13370 1112 aa11.04□□□□□ -0.64
VAMP3-201ENST00000054666 PPP2R1AP30153 589 aa11.03□□□□□ -0.64
VAMP3-201ENST00000054666 WDR43Q15061 677 aaKnown RBP eCLIP11.03□□□□□ -0.64
VAMP3-201ENST00000054666 PHF23Q9BUL5 403 aaPredicted RBP11.03□□□□□ -0.64
VAMP3-201ENST00000054666 TRAK1Q9UPV9 953 aa11.03□□□□□ -0.64
VAMP3-201ENST00000054666 SENP3-EIF4A1A0A087X0R7 540 aa11.02□□□□□ -0.65
VAMP3-201ENST00000054666 AGLP35573 1532 aa11.01□□□□□ -0.65
VAMP3-201ENST00000054666 ZFYVE9O95405 1425 aa11.01□□□□□ -0.65
VAMP3-201ENST00000054666 ARHGEF28Q8N1W1 1705 aaKnown RBP11□□□□□ -0.65
VAMP3-201ENST00000054666 RNF123Q5XPI4 1314 aa11□□□□□ -0.65
VAMP3-201ENST00000054666 TMEM131LA2VDJ0 1609 aa11□□□□□ -0.65
VAMP3-201ENST00000054666 IDI1Q13907 227 aa11□□□□□ -0.65
VAMP3-201ENST00000054666 SALL2Q9Y467 1007 aaPredicted RBP11□□□□□ -0.65
VAMP3-201ENST00000054666 TMEM132EQ6IEE7 984 aa10.99□□□□□ -0.65
VAMP3-201ENST00000054666 PPP6R1Q9UPN7 881 aa10.99□□□□□ -0.65
VAMP3-201ENST00000054666 MYO5BQ9ULV0 1848 aa10.99□□□□□ -0.65
VAMP3-201ENST00000054666 ARHGEF40Q8TER5 1519 aa10.98□□□□□ -0.65
VAMP3-201ENST00000054666 NUTM2DQ5VT03 806 aaPredicted RBP10.98□□□□□ -0.65
VAMP3-201ENST00000054666 EVC2Q86UK5 1308 aa10.97□□□□□ -0.65
VAMP3-201ENST00000054666 NSD3Q9BZ95 1437 aa10.97□□□□□ -0.65
VAMP3-201ENST00000054666 CLTCQ00610 1675 aaKnown RBP10.97□□□□□ -0.65
VAMP3-201ENST00000054666 B4GALNT3Q6L9W6 998 aa10.96□□□□□ -0.65
VAMP3-201ENST00000054666 STAG3Q9UJ98 1225 aa10.96□□□□□ -0.65
VAMP3-201ENST00000054666 RCAN3Q9UKA8 241 aa10.96□□□□□ -0.65
VAMP3-201ENST00000054666 USP32Q8NFA0 1604 aa10.96□□□□□ -0.65
VAMP3-201ENST00000054666 ADAMTS8Q9UP79 889 aa10.96□□□□□ -0.66
VAMP3-201ENST00000054666 RRP1P56182 461 aaKnown RBP10.95□□□□□ -0.66
VAMP3-201ENST00000054666 PUS7Q96PZ0 661 aaKnown RBP10.95□□□□□ -0.66
VAMP3-201ENST00000054666 TULP4Q9NRJ4 1543 aa10.95□□□□□ -0.66
VAMP3-201ENST00000054666 KIF13AQ9H1H9 1805 aa10.95□□□□□ -0.66
VAMP3-201ENST00000054666 CARD14Q9BXL6 1004 aa10.94□□□□□ -0.66
VAMP3-201ENST00000054666 SPATA31D1Q6ZQQ2 1576 aa10.94□□□□□ -0.66
VAMP3-201ENST00000054666 NINLQ9Y2I6 1382 aa10.94□□□□□ -0.66
VAMP3-201ENST00000054666 CGNL1Q0VF96 1302 aa10.93□□□□□ -0.66
VAMP3-201ENST00000054666 FBXO31Q5XUX0 539 aaPredicted RBP10.93□□□□□ -0.66
VAMP3-201ENST00000054666 CCDC136Q96JN2 1154 aa10.93□□□□□ -0.66
VAMP3-201ENST00000054666 ANKRD36BQ8N2N9 1353 aa10.92□□□□□ -0.66
VAMP3-201ENST00000054666 MORC1Q86VD1 984 aa10.92□□□□□ -0.66
VAMP3-201ENST00000054666 NSD2O96028 1365 aa10.92□□□□□ -0.66
VAMP3-201ENST00000054666 CDCA7LQ96GN5 454 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms