RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 FAM161AQ3B820 660 aa18.3■□□□□ 0.52
USH1C-201ENST00000005226 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.29■□□□□ 0.52
USH1C-201ENST00000005226 BRPF3Q9ULD4 1205 aa18.29■□□□□ 0.52
USH1C-201ENST00000005226 LAMC1P11047 1609 aa18.27■□□□□ 0.51
USH1C-201ENST00000005226 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.27■□□□□ 0.51
USH1C-201ENST00000005226 IQGAP3Q86VI3 1631 aa18.26■□□□□ 0.51
USH1C-201ENST00000005226 AFAP1Q8N556 730 aa18.26■□□□□ 0.51
USH1C-201ENST00000005226 IGHDP01880 384 aa18.26■□□□□ 0.51
USH1C-201ENST00000005226 EIF2AK4Q9P2K8 1649 aaKnown RBP18.25■□□□□ 0.51
USH1C-201ENST00000005226 GSE1Q14687 1217 aa18.25■□□□□ 0.51
USH1C-201ENST00000005226 FRAT1Q92837 279 aaPredicted RBP18.25■□□□□ 0.51
USH1C-201ENST00000005226 FRAT2O75474 233 aaPredicted RBP18.23■□□□□ 0.51
USH1C-201ENST00000005226 NEUROD2Q15784 382 aa18.22■□□□□ 0.51
USH1C-201ENST00000005226 CFAP70Q5T0N1 1121 aa18.22■□□□□ 0.51
USH1C-201ENST00000005226 TRMT2AQ8IZ69 625 aaKnown RBP18.22■□□□□ 0.51
USH1C-201ENST00000005226 TRAPPC8Q9Y2L5 1435 aa18.22■□□□□ 0.51
USH1C-201ENST00000005226 MAST1Q9Y2H9 1570 aa18.22■□□□□ 0.51
USH1C-201ENST00000005226 DUOX2Q9NRD8 1548 aa18.22■□□□□ 0.51
USH1C-201ENST00000005226 CARD14Q9BXL6 1004 aa18.22■□□□□ 0.51
USH1C-201ENST00000005226 ATP10AO60312 1499 aa18.21■□□□□ 0.51
USH1C-201ENST00000005226 TNNT2P45379 298 aaPredicted RBP18.21■□□□□ 0.51
USH1C-201ENST00000005226 CDCA8Q53HL2 280 aa18.21■□□□□ 0.51
USH1C-201ENST00000005226 PANK1Q8TE04 598 aa18.21■□□□□ 0.51
USH1C-201ENST00000005226 EFCAB2Q5VUJ9 269 aa18.21■□□□□ 0.5
USH1C-201ENST00000005226 ASXL1Q8IXJ9 1541 aa18.2■□□□□ 0.5
USH1C-201ENST00000005226 SEC24BO95487 1268 aa18.2■□□□□ 0.5
USH1C-201ENST00000005226 COG6Q9Y2V7 657 aa18.2■□□□□ 0.5
USH1C-201ENST00000005226 ERCC6L2Q5T890 1561 aa18.19■□□□□ 0.5
USH1C-201ENST00000005226 RRP7AQ9Y3A4 280 aaKnown RBP18.19■□□□□ 0.5
USH1C-201ENST00000005226 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.19■□□□□ 0.5
USH1C-201ENST00000005226 RNF17Q9BXT8 1623 aaKnown RBP18.19■□□□□ 0.5
USH1C-201ENST00000005226 SCAF11Q99590 1463 aaKnown RBP18.18■□□□□ 0.5
USH1C-201ENST00000005226 PLXNC1O60486 1568 aa18.18■□□□□ 0.5
USH1C-201ENST00000005226 SPAG9O60271 1321 aaKnown RBP18.18■□□□□ 0.5
USH1C-201ENST00000005226 MADDQ8WXG6 1647 aa18.18■□□□□ 0.5
USH1C-201ENST00000005226 CANXP27824 592 aaKnown RBP18.16■□□□□ 0.5
USH1C-201ENST00000005226 PIK3C2GO75747 1445 aa18.16■□□□□ 0.5
USH1C-201ENST00000005226 NKTRP30414 1462 aaKnown RBP18.16■□□□□ 0.5
USH1C-201ENST00000005226 E9PSI1 815 aa18.16■□□□□ 0.5
USH1C-201ENST00000005226 TNNQ9UQP3 1299 aa18.16■□□□□ 0.5
USH1C-201ENST00000005226 ADGRF5Q8IZF2 1346 aa18.15■□□□□ 0.5
USH1C-201ENST00000005226 IQGAP1P46940 1657 aa18.15■□□□□ 0.5
USH1C-201ENST00000005226 PLCH2O75038 1416 aa18.14■□□□□ 0.49
USH1C-201ENST00000005226 USP19O94966 1318 aa18.13■□□□□ 0.49
USH1C-201ENST00000005226 BCL2L13Q9BXK5 485 aa18.13■□□□□ 0.49
USH1C-201ENST00000005226 KIF3BO15066 747 aa18.13■□□□□ 0.49
USH1C-201ENST00000005226 WWC1Q8IX03 1113 aa18.12■□□□□ 0.49
USH1C-201ENST00000005226 SYNMO15061 1565 aa18.12■□□□□ 0.49
USH1C-201ENST00000005226 CENPJQ9HC77 1338 aaPredicted RBP18.12■□□□□ 0.49
USH1C-201ENST00000005226 EIF3AQ14152 1382 aaKnown RBP18.11■□□□□ 0.49
USH1C-201ENST00000005226 CLTCL1P53675 1640 aa18.1■□□□□ 0.49
USH1C-201ENST00000005226 CLUAP1Q96AJ1 413 aa18.1■□□□□ 0.49
USH1C-201ENST00000005226 MYOM1P52179 1685 aa18.1■□□□□ 0.49
USH1C-201ENST00000005226 SLKQ9H2G2 1235 aaPredicted RBP18.09■□□□□ 0.49
USH1C-201ENST00000005226 SCAPERQ9BY12 1400 aa18.09■□□□□ 0.49
USH1C-201ENST00000005226 CHGAP10645 457 aaKnown RBP18.08■□□□□ 0.49
USH1C-201ENST00000005226 UGGT1Q9NYU2 1555 aa18.08■□□□□ 0.49
USH1C-201ENST00000005226 RLBP1P12271 317 aa18.07■□□□□ 0.48
USH1C-201ENST00000005226 SLC12A5Q9H2X9 1139 aa18.07■□□□□ 0.48
USH1C-201ENST00000005226 CLASP1Q7Z460 1538 aa18.07■□□□□ 0.48
USH1C-201ENST00000005226 ABCC2Q92887 1545 aa18.07■□□□□ 0.48
USH1C-201ENST00000005226 ERVK-7P63135 1459 aa18.07■□□□□ 0.48
USH1C-201ENST00000005226 NPC1L1Q9UHC9 1359 aa18.07■□□□□ 0.48
USH1C-201ENST00000005226 TRAK1Q9UPV9 953 aa18.07■□□□□ 0.48
USH1C-201ENST00000005226 PCDHB15Q9Y5E8 787 aa18.07■□□□□ 0.48
USH1C-201ENST00000005226 CGNL1Q0VF96 1302 aa18.06■□□□□ 0.48
USH1C-201ENST00000005226 TRPM2O94759 1503 aa18.06■□□□□ 0.48
USH1C-201ENST00000005226 PDE3AQ14432 1141 aa18.06■□□□□ 0.48
USH1C-201ENST00000005226 MORC1Q86VD1 984 aa18.06■□□□□ 0.48
USH1C-201ENST00000005226 PTPRTO14522 1441 aa18.06■□□□□ 0.48
USH1C-201ENST00000005226 CHD1O14646 1710 aa18.05■□□□□ 0.48
USH1C-201ENST00000005226 SPHKAPQ2M3C7 1700 aa18.05■□□□□ 0.48
USH1C-201ENST00000005226 TCP11L2Q8N4U5 519 aa18.05■□□□□ 0.48
USH1C-201ENST00000005226 SENP3Q9H4L4 574 aaPredicted RBP18.04■□□□□ 0.48
USH1C-201ENST00000005226 POGKQ9P215 609 aa18.04■□□□□ 0.48
USH1C-201ENST00000005226 ABCC1P33527 1531 aa18.04■□□□□ 0.48
USH1C-201ENST00000005226 RARSP54136 660 aaKnown RBP18.04■□□□□ 0.48
USH1C-201ENST00000005226 TMEM132EQ6IEE7 984 aa18.03■□□□□ 0.48
USH1C-201ENST00000005226 SPRYD3Q8NCJ5 442 aa18.02■□□□□ 0.48
USH1C-201ENST00000005226 KDM5AP29375 1690 aaKnown RBP18.02■□□□□ 0.48
USH1C-201ENST00000005226 STAC3Q96MF2 364 aa18.01■□□□□ 0.47
USH1C-201ENST00000005226 CEP152O94986 1710 aa18.01■□□□□ 0.47
USH1C-201ENST00000005226 PDZRN3Q9UPQ7 1066 aa18■□□□□ 0.47
USH1C-201ENST00000005226 KANK1Q14678 1352 aa18■□□□□ 0.47
USH1C-201ENST00000005226 NSD3Q9BZ95 1437 aa18■□□□□ 0.47
USH1C-201ENST00000005226 MTHFSP49914 203 aa18■□□□□ 0.47
USH1C-201ENST00000005226 RUNDC1Q96C34 613 aa18■□□□□ 0.47
USH1C-201ENST00000005226 NUTM2DQ5VT03 806 aaPredicted RBP17.99■□□□□ 0.47
USH1C-201ENST00000005226 MAPK8IP3Q9UPT6 1336 aa17.99■□□□□ 0.47
USH1C-201ENST00000005226 ARXQ96QS3 562 aa17.99■□□□□ 0.47
USH1C-201ENST00000005226 POLR3AO14802 1390 aaPredicted RBP17.98■□□□□ 0.47
USH1C-201ENST00000005226 ZCCHC11Q5TAX3 1644 aaKnown RBP17.98■□□□□ 0.47
USH1C-201ENST00000005226 ZFYVE16Q7Z3T8 1539 aa17.97■□□□□ 0.47
USH1C-201ENST00000005226 PRKCSHP14314 528 aaPredicted RBP17.96■□□□□ 0.47
USH1C-201ENST00000005226 ABCA6Q8N139 1617 aa17.96■□□□□ 0.46
USH1C-201ENST00000005226 BECN1Q14457 450 aa17.95■□□□□ 0.46
USH1C-201ENST00000005226 SHROOM2Q13796 1616 aa17.95■□□□□ 0.46
USH1C-201ENST00000005226 PMFBP1Q8TBY8 1022 aa17.94■□□□□ 0.46
USH1C-201ENST00000005226 TSR2Q969E8 191 aaKnown RBP17.94■□□□□ 0.46
USH1C-201ENST00000005226 RTEL1-TNFRSF6BF6WH68 1400 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms