RNA–Protein interactions for RNA: ENSMUST00000062439.4

Ccdc54-201, Transcript of Coiled-coil domain-containing protein 54, mousemouse

APPRIS P1 BASIC

Gene Ccdc54, Length 1,296 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc54-201ENSMUST00000062439 Ccdc34Q3UI66 367 aa13.24□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 Mre11Q61216 706 aa13.24□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 Pelp1Q9DBD5 1123 aaKnown RBP13.24□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 Limd1Q9QXD8 668 aa13.24□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 SowahdQ8BY98 327 aa13.23□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 Usp3Q91W36 520 aaKnown RBP13.23□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 RragcQ99K70 398 aa13.23□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 Rnf25Q9QZR0 456 aa13.23□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 ZfrO88532 1074 aaKnown RBP13.22□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 Nos2P29477 1144 aa13.22□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 Trim26Q99PN3 545 aa13.22□□□□□ -0.29
Ccdc54-201ENSMUST00000062439 Ankrd33bQ3U0L2 486 aa13.2□□□□□ -0.3
Ccdc54-201ENSMUST00000062439 Setdb2Q8C267 713 aa13.2□□□□□ -0.3
Ccdc54-201ENSMUST00000062439 Ankrd34aB2RW11 495 aa13.18□□□□□ -0.3
Ccdc54-201ENSMUST00000062439 Nubp1Q9R060 320 aa13.18□□□□□ -0.3
Ccdc54-201ENSMUST00000062439 Arih1Q9Z1K5 555 aa13.18□□□□□ -0.3
Ccdc54-201ENSMUST00000062439 Hsd17b7O88736 334 aa13.17□□□□□ -0.3
Ccdc54-201ENSMUST00000062439 NntQ61941 1086 aaKnown RBP13.17□□□□□ -0.3
Ccdc54-201ENSMUST00000062439 Gabbr2Q80T41 940 aa13.17□□□□□ -0.3
Ccdc54-201ENSMUST00000062439 Nfxl1E9Q8I7 918 aaKnown RBP13.15□□□□□ -0.3
Ccdc54-201ENSMUST00000062439 Tfip11Q9ERA6 838 aaKnown RBP13.15□□□□□ -0.3
Ccdc54-201ENSMUST00000062439 Ppp4cP97470 307 aa13.14□□□□□ -0.31
Ccdc54-201ENSMUST00000062439 Ccdc61Q3UJV1 511 aa13.14□□□□□ -0.31
Ccdc54-201ENSMUST00000062439 Scube3Q66PY1 993 aa13.13□□□□□ -0.31
Ccdc54-201ENSMUST00000062439 Rtn1Q8K0T0 780 aa13.13□□□□□ -0.31
Ccdc54-201ENSMUST00000062439 Kcnn2P58390 839 aa13.12□□□□□ -0.31
Ccdc54-201ENSMUST00000062439 Fam221bQ8C627 487 aa13.11□□□□□ -0.31
Ccdc54-201ENSMUST00000062439 Pnma5Q5DTT8 618 aa13.09□□□□□ -0.31
Ccdc54-201ENSMUST00000062439 Myt1Q8CFC2 1127 aa13.09□□□□□ -0.31
Ccdc54-201ENSMUST00000062439 Pcdhb3Q91XZ7 784 aa13.08□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Dbn1Q9QXS6 706 aa13.08□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Lce6aD3YV94 81 aa13.07□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Catsper2A2ARP9 588 aa13.06□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Pkd2O35245 966 aa13.06□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Lmod2Q3UHZ5 550 aa13.06□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 PtpreP49446 699 aa13.05□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Wbp1lQ8BGW2 348 aa13.05□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Sall2Q9QX96 1004 aa13.05□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Ogfod1Q3U0K8 545 aa13.04□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Rbm26Q6NZN0 1012 aaKnown RBP13.04□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Foxj1Q61660 421 aa13.03□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Atp2b4Q6Q477 1205 aa13.03□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Hhipl2Q9D2G9 717 aa13.03□□□□□ -0.32
Ccdc54-201ENSMUST00000062439 Thap8E9Q695 213 aa13.02□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Klra1P20937 262 aa13.02□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Znf423Q80TS5 1292 aa13.02□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 MsmpB1AWI6 139 aa13.01□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Zpr1Q62384 459 aa13.01□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Gtf2ird1Q9JI57 1104 aaKnown RBP13.01□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 DgkhD3YXJ0 1156 aa13□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Trak1Q6PD31 939 aa13□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 FanccP50652 591 aa12.99□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Nek1P51954 1203 aa12.99□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Scnn1aQ61180 699 aa12.99□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Kctd12Q6WVG3 327 aa12.99□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Ppp2r2dQ925E7 453 aa12.99□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Thap11Q9JJD0 305 aa12.98□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Ptk2P34152 1090 aa12.97□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Itga6Q61739 1091 aa12.97□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Nr1h3Q9Z0Y9 445 aa12.97□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 AU022751B1B0V2 589 aa12.96□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Zfp777B9EKF4 885 aa12.96□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Gm20521D3Z5F7 333 aa12.96□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Plpp7Q91WB2 271 aa12.96□□□□□ -0.33
Ccdc54-201ENSMUST00000062439 Lhx8O35652 367 aa12.95□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Mdm2P23804 489 aa12.95□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Atp6v1aP50516 617 aaKnown RBP12.95□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Abl2Q4JIM5 1182 aa12.95□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 TbcelQ8C5W3 424 aa12.95□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Itgbl1Q8VDV0 494 aa12.95□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Fut2Q9JL27 347 aa12.95□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Map3k9Q3U1V8 1077 aa12.94□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Fam193bQ3U2K0 892 aa12.94□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Tigd5Q499M4 642 aa12.94□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Cops2P61202 443 aaKnown RBP12.93□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Nr6a1Q64249 495 aa12.93□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Zc3h4Q6ZPZ3 1304 aaKnown RBP12.92□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Cabp4Q8VHC5 271 aa12.92□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Jph1Q9ET80 660 aa12.92□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Nrg2P56974 756 aa12.91□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Slc10a4Q3UEZ8 437 aa12.91□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 Cep57l1Q8VDS7 400 aa12.9□□□□□ -0.34
Ccdc54-201ENSMUST00000062439 A930017K11RikE0CXQ2 571 aa12.89□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 FkbplO35450 347 aa12.89□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 Fbxo11Q7TPD1 930 aaKnown RBP12.89□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 NptxrQ99J85 493 aa12.89□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 Mei1Q9D4I2 1268 aa12.89□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 Ctdspl2Q8BG15 465 aa12.88□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 4930504O13RikQ8C5Z9 145 aa12.87□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 MypopQ8R4U1 393 aa12.87□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 UvssaQ9D479 717 aa12.87□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 Pla2g2cP48076 150 aa12.85□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 Tsen34Q8BMZ5 316 aa12.85□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 Usp26Q99MX1 835 aa12.85□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 5730596B20RikQ8BQ08 205 aa12.84□□□□□ -0.35
Ccdc54-201ENSMUST00000062439 PtprnQ60673 979 aa12.83□□□□□ -0.36
Ccdc54-201ENSMUST00000062439 Dpp8Q80YA7 892 aa12.83□□□□□ -0.36
Ccdc54-201ENSMUST00000062439 ScribQ80U72 1612 aa12.83□□□□□ -0.36
Ccdc54-201ENSMUST00000062439 Mtmr1Q9Z2C4 669 aa12.82□□□□□ -0.36
Ccdc54-201ENSMUST00000062439 Slc30a10Q3UVU3 470 aa12.81□□□□□ -0.36
Retrieved 100 of 22,080 RNA–protein pairs in 73.5 ms