Protein–RNA interactions for Protein: Q91XZ7

Pcdhb3, Protocadherin beta 3, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb3Q91XZ7 Gm25239-201ENSMUST00000174915 86 ntBASIC34.82■■■■□ 3.16
Pcdhb3Q91XZ7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
Pcdhb3Q91XZ7 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Pcdhb3Q91XZ7 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Pcdhb3Q91XZ7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.44■■■□□ 2.78
Pcdhb3Q91XZ7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Pcdhb3Q91XZ7 Psd-208ENSMUST00000224556 2034 ntBASIC32.11■■■□□ 2.73
Pcdhb3Q91XZ7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Pcdhb3Q91XZ7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Pcdhb3Q91XZ7 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
Pcdhb3Q91XZ7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Pcdhb3Q91XZ7 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Pcdhb3Q91XZ7 Gm15042-201ENSMUST00000120212 883 ntBASIC30.45■■■□□ 2.47
Pcdhb3Q91XZ7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Pcdhb3Q91XZ7 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
Pcdhb3Q91XZ7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Pcdhb3Q91XZ7 Gm24109-201ENSMUST00000175489 103 ntBASIC30.17■■■□□ 2.42
Pcdhb3Q91XZ7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
Pcdhb3Q91XZ7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Pcdhb3Q91XZ7 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Pcdhb3Q91XZ7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Pcdhb3Q91XZ7 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
Pcdhb3Q91XZ7 Gm15045-201ENSMUST00000117359 883 ntBASIC29.77■■■□□ 2.36
Pcdhb3Q91XZ7 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
Pcdhb3Q91XZ7 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC29.64■■■□□ 2.34
Pcdhb3Q91XZ7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Pcdhb3Q91XZ7 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Pcdhb3Q91XZ7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Pcdhb3Q91XZ7 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC29.49■■■□□ 2.31
Pcdhb3Q91XZ7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
Pcdhb3Q91XZ7 Gm42596-201ENSMUST00000196305 1958 ntBASIC29.36■■■□□ 2.29
Pcdhb3Q91XZ7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Pcdhb3Q91XZ7 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Pcdhb3Q91XZ7 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC29.19■■■□□ 2.26
Pcdhb3Q91XZ7 Gm23366-201ENSMUST00000175022 89 ntBASIC29.12■■■□□ 2.25
Pcdhb3Q91XZ7 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Pcdhb3Q91XZ7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.01■■■□□ 2.23
Pcdhb3Q91XZ7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29.01■■■□□ 2.23
Pcdhb3Q91XZ7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Pcdhb3Q91XZ7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Pcdhb3Q91XZ7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.85■■■□□ 2.21
Pcdhb3Q91XZ7 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC28.75■■■□□ 2.19
Pcdhb3Q91XZ7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Pcdhb3Q91XZ7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.18
Pcdhb3Q91XZ7 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
Pcdhb3Q91XZ7 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Pcdhb3Q91XZ7 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.14
Pcdhb3Q91XZ7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Pcdhb3Q91XZ7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Pcdhb3Q91XZ7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Pcdhb3Q91XZ7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
Pcdhb3Q91XZ7 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Pcdhb3Q91XZ7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.22■■■□□ 2.11
Pcdhb3Q91XZ7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
Pcdhb3Q91XZ7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
Pcdhb3Q91XZ7 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Pcdhb3Q91XZ7 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
Pcdhb3Q91XZ7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
Pcdhb3Q91XZ7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC28.11■■■□□ 2.09
Pcdhb3Q91XZ7 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Pcdhb3Q91XZ7 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.09■■■□□ 2.09
Pcdhb3Q91XZ7 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
Pcdhb3Q91XZ7 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
Pcdhb3Q91XZ7 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
Pcdhb3Q91XZ7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC28.02■■■□□ 2.08
Pcdhb3Q91XZ7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Pcdhb3Q91XZ7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Pcdhb3Q91XZ7 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
Pcdhb3Q91XZ7 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC27.93■■■□□ 2.06
Pcdhb3Q91XZ7 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.91■■■□□ 2.06
Pcdhb3Q91XZ7 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC27.87■■■□□ 2.05
Pcdhb3Q91XZ7 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC27.83■■■□□ 2.05
Pcdhb3Q91XZ7 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC27.82■■■□□ 2.04
Pcdhb3Q91XZ7 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
Pcdhb3Q91XZ7 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Pcdhb3Q91XZ7 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Pcdhb3Q91XZ7 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
Pcdhb3Q91XZ7 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC27.63■■■□□ 2.01
Pcdhb3Q91XZ7 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Pcdhb3Q91XZ7 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Pcdhb3Q91XZ7 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
Pcdhb3Q91XZ7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.57■■■□□ 2
Pcdhb3Q91XZ7 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Pcdhb3Q91XZ7 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC27.52■■■□□ 2
Pcdhb3Q91XZ7 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC27.51■■□□□ 1.99
Pcdhb3Q91XZ7 Gm25238-201ENSMUST00000174914 89 ntBASIC27.48■■□□□ 1.99
Pcdhb3Q91XZ7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Pcdhb3Q91XZ7 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Pcdhb3Q91XZ7 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Pcdhb3Q91XZ7 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Pcdhb3Q91XZ7 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Pcdhb3Q91XZ7 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Pcdhb3Q91XZ7 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Pcdhb3Q91XZ7 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Pcdhb3Q91XZ7 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Pcdhb3Q91XZ7 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Pcdhb3Q91XZ7 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Pcdhb3Q91XZ7 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.26■■□□□ 1.95
Pcdhb3Q91XZ7 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Pcdhb3Q91XZ7 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms