Protein–RNA interactions for Protein: Q91XZ7

Pcdhb3, Protocadherin beta 3, mousemouse

Predictions only

Length 784 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb3Q91XZ7 Gm25239-201ENSMUST00000174915 86 ntBASIC34.82■■■■□ 3.16
Pcdhb3Q91XZ7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
Pcdhb3Q91XZ7 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC33.09■■■□□ 2.89
Pcdhb3Q91XZ7 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
Pcdhb3Q91XZ7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC32.44■■■□□ 2.78
Pcdhb3Q91XZ7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC32.19■■■□□ 2.74
Pcdhb3Q91XZ7 Psd-208ENSMUST00000224556 2034 ntBASIC32.11■■■□□ 2.73
Pcdhb3Q91XZ7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
Pcdhb3Q91XZ7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Pcdhb3Q91XZ7 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
Pcdhb3Q91XZ7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Pcdhb3Q91XZ7 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Pcdhb3Q91XZ7 Gm15042-201ENSMUST00000120212 883 ntBASIC30.45■■■□□ 2.47
Pcdhb3Q91XZ7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
Pcdhb3Q91XZ7 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
Pcdhb3Q91XZ7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
Pcdhb3Q91XZ7 Gm24109-201ENSMUST00000175489 103 ntBASIC30.17■■■□□ 2.42
Pcdhb3Q91XZ7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
Pcdhb3Q91XZ7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
Pcdhb3Q91XZ7 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
Pcdhb3Q91XZ7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
Pcdhb3Q91XZ7 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
Pcdhb3Q91XZ7 Gm15045-201ENSMUST00000117359 883 ntBASIC29.77■■■□□ 2.36
Pcdhb3Q91XZ7 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
Pcdhb3Q91XZ7 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC29.64■■■□□ 2.34
Pcdhb3Q91XZ7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Pcdhb3Q91XZ7 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Pcdhb3Q91XZ7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Pcdhb3Q91XZ7 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC29.49■■■□□ 2.31
Pcdhb3Q91XZ7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
Pcdhb3Q91XZ7 Gm42596-201ENSMUST00000196305 1958 ntBASIC29.36■■■□□ 2.29
Pcdhb3Q91XZ7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Pcdhb3Q91XZ7 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Pcdhb3Q91XZ7 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC29.19■■■□□ 2.26
Pcdhb3Q91XZ7 Gm23366-201ENSMUST00000175022 89 ntBASIC29.12■■■□□ 2.25
Pcdhb3Q91XZ7 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
Pcdhb3Q91XZ7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.01■■■□□ 2.23
Pcdhb3Q91XZ7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC29.01■■■□□ 2.23
Pcdhb3Q91XZ7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Pcdhb3Q91XZ7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.22
Pcdhb3Q91XZ7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC28.85■■■□□ 2.21
Pcdhb3Q91XZ7 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC28.75■■■□□ 2.19
Pcdhb3Q91XZ7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
Pcdhb3Q91XZ7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.18
Pcdhb3Q91XZ7 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
Pcdhb3Q91XZ7 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Pcdhb3Q91XZ7 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC28.45■■■□□ 2.14
Pcdhb3Q91XZ7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
Pcdhb3Q91XZ7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
Pcdhb3Q91XZ7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Pcdhb3Q91XZ7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
Pcdhb3Q91XZ7 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
Pcdhb3Q91XZ7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC28.22■■■□□ 2.11
Pcdhb3Q91XZ7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
Pcdhb3Q91XZ7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
Pcdhb3Q91XZ7 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Pcdhb3Q91XZ7 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
Pcdhb3Q91XZ7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
Pcdhb3Q91XZ7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC28.11■■■□□ 2.09
Pcdhb3Q91XZ7 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Pcdhb3Q91XZ7 Gm10524-201ENSMUST00000181931 1893 ntBASIC28.09■■■□□ 2.09
Pcdhb3Q91XZ7 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
Pcdhb3Q91XZ7 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
Pcdhb3Q91XZ7 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
Pcdhb3Q91XZ7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC28.02■■■□□ 2.08
Pcdhb3Q91XZ7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Pcdhb3Q91XZ7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Pcdhb3Q91XZ7 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC27.96■■■□□ 2.07
Pcdhb3Q91XZ7 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC27.93■■■□□ 2.06
Pcdhb3Q91XZ7 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.91■■■□□ 2.06
Pcdhb3Q91XZ7 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC27.87■■■□□ 2.05
Pcdhb3Q91XZ7 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC27.83■■■□□ 2.05
Pcdhb3Q91XZ7 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC27.82■■■□□ 2.04
Pcdhb3Q91XZ7 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
Pcdhb3Q91XZ7 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
Pcdhb3Q91XZ7 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Pcdhb3Q91XZ7 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC27.71■■■□□ 2.03
Pcdhb3Q91XZ7 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC27.63■■■□□ 2.01
Pcdhb3Q91XZ7 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Pcdhb3Q91XZ7 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Pcdhb3Q91XZ7 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC27.58■■■□□ 2.01
Pcdhb3Q91XZ7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC27.57■■■□□ 2
Pcdhb3Q91XZ7 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Pcdhb3Q91XZ7 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC27.52■■■□□ 2
Pcdhb3Q91XZ7 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC27.51■■□□□ 1.99
Pcdhb3Q91XZ7 Gm25238-201ENSMUST00000174914 89 ntBASIC27.48■■□□□ 1.99
Pcdhb3Q91XZ7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
Pcdhb3Q91XZ7 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Pcdhb3Q91XZ7 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Pcdhb3Q91XZ7 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
Pcdhb3Q91XZ7 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
Pcdhb3Q91XZ7 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Pcdhb3Q91XZ7 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Pcdhb3Q91XZ7 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
Pcdhb3Q91XZ7 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
Pcdhb3Q91XZ7 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Pcdhb3Q91XZ7 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
Pcdhb3Q91XZ7 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC27.26■■□□□ 1.95
Pcdhb3Q91XZ7 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
Pcdhb3Q91XZ7 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms