RNA–Protein interactions for RNA: YBR221C

PDB1, Transcript of E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, yeast

Gene PDB1, Length 1,101 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PDB1	YBR221C	YPR202W	Q08993	238 aa		4.86	□□□□□ -1.63
PDB1	YBR221C	MCT1	Q12283	360 aa		4.86	□□□□□ -1.63
PDB1	YBR221C	GEP5	Q12393	293 aa		4.86	□□□□□ -1.63
PDB1	YBR221C	YAL064W-B	O13512	126 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	CDC7	P06243	507 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	DDI2	P0CH63	225 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	DDI3	P0CH64	225 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	HYM1	P32464	399 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	KTI12	P34253	313 aa	Known RBP	4.85	□□□□□ -1.63
PDB1	YBR221C	SFK1	P35735	353 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	PAN3	P36102	679 aa	Predicted RBP	4.85	□□□□□ -1.63
PDB1	YBR221C	DOG2	P38773	246 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	DOG1	P38774	246 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	TES1	P41903	349 aa	Known RBP	4.85	□□□□□ -1.63
PDB1	YBR221C	SER2	P42941	309 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	IKS1	P47042	667 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	TPN1	P53099	579 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	YNR048W	P53740	393 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	YPL113C	Q02961	396 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	SPG4	Q04438	115 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	YMR317W	Q04893	1140 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	YMR320W	Q04897	101 aa		4.85	□□□□□ -1.63
PDB1	YBR221C	LPX1	Q12405	387 aa	Known RBP	4.85	□□□□□ -1.63
PDB1	YBR221C	YKR104W	P0CE69	306 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	YAR066W	P0CX18	203 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	YHR214W	P0CX19	203 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	AHC2	P25649	128 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	COQ3	P27680	312 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	RPC19	P28000	142 aa	Known RBP	4.84	□□□□□ -1.63
PDB1	YBR221C	AEP1	P32493	518 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	SFC1	P33303	322 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	RPS20	P38701	121 aa	Known RBP	4.84	□□□□□ -1.63
PDB1	YBR221C	COS8	P38723	381 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	TRR2	P38816	342 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	PEX22	P39718	180 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	YFL015C	P43578	164 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	UBC12	P52491	188 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	TDA7	P53882	636 aa	Predicted RBP	4.84	□□□□□ -1.63
PDB1	YBR221C	ACT1	P60010	375 aa	Known RBP	4.84	□□□□□ -1.63
PDB1	YBR221C	YMR206W	Q03695	313 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	LIP2	Q06005	328 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	PEX30	Q06169	523 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	YLR446W	Q06204	433 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	THI20	Q08224	551 aa		4.84	□□□□□ -1.63
PDB1	YBR221C	RRG7	Q08774	242 aa	Predicted RBP	4.84	□□□□□ -1.63
PDB1	YBR221C	CAP2	P13517	287 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	PHO13	P19881	312 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	ATG22	P25568	528 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	SHE2	P36068	246 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
PDB1	YBR221C	SRX1	P36077	127 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	YBR220C	P38318	560 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	YEA4	P40004	342 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	AIM25	P47140	327 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	FLC3	P53121	802 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	TIM13	P53299	105 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	ATP23	P53722	227 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	SUR7	P54003	302 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	YDR391C	Q04170	232 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	FDH1	Q08911	376 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	LAA1	P39526	2014 aa		4.83	□□□□□ -1.64
PDB1	YBR221C	SNF4	P12904	322 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	SPS100	P13130	326 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	YCR090C	P25654	182 aa	Known RBP	4.82	□□□□□ -1.64
PDB1	YBR221C	ERG24	P32462	438 aa	Known RBP	4.82	□□□□□ -1.64
PDB1	YBR221C	TRS65	P32893	560 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	APS1	P35181	156 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	MRPL39	P36533	70 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	MRP21	P38175	177 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	BAT1	P38891	393 aa	Known RBP	4.82	□□□□□ -1.64
PDB1	YBR221C	HEM14	P40012	539 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	AYR1	P40471	297 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	BUD13	P46947	266 aa	Predicted RBP	4.82	□□□□□ -1.64
PDB1	YBR221C	SOL1	P50278	321 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	ARO8	P53090	500 aa	Known RBP	4.82	□□□□□ -1.64
PDB1	YBR221C	HST4	P53688	370 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	COF1	Q03048	143 aa	Known RBP	4.82	□□□□□ -1.64
PDB1	YBR221C	SCS7	Q03529	384 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	YTH1	Q06102	208 aa	Predicted RBP	4.82	□□□□□ -1.64
PDB1	YBR221C	ATG39	Q06159	398 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	SHH4	Q06236	168 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	PRM4	Q12498	284 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	HTZ1	Q12692	134 aa	Known RBP	4.82	□□□□□ -1.64
PDB1	YBR221C	MEC1	P38111	2368 aa		4.82	□□□□□ -1.64
PDB1	YBR221C	MDM10	P18409	493 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	YCR100C	P25606	316 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	YMC1	P32331	307 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	PHA2	P32452	334 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	PRY2	P36110	329 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	KAE1	P36132	386 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	ARN1	P38731	627 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	CHL4	P38907	458 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	AIM2	P39721	246 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	AVT2	P39981	480 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	APQ12	P40532	138 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	RPS12	P48589	143 aa	Known RBP	4.81	□□□□□ -1.64
PDB1	YBR221C	YGL101W	P53144	215 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
PDB1	YBR221C	HHT1	P61830	136 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	LGE1	Q02796	332 aa	Known RBP	4.81	□□□□□ -1.64
PDB1	YBR221C	YML018C	Q03730	393 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 94.5 ms