RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SH3TC2Q8TF17 1288 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 DDX1Q92499 740 aaKnown RBP18.09■□□□□ 0.49
CLN3-252ENST00000636907 TSEN34Q9BSV6 310 aaKnown RBP18.09■□□□□ 0.49
CLN3-252ENST00000636907 PLEKHA5Q9HAU0 1116 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 TRMT13Q9NUP7 481 aaKnown RBP18.09■□□□□ 0.49
CLN3-252ENST00000636907 INTUQ9ULD6 942 aa18.09■□□□□ 0.49
CLN3-252ENST00000636907 UQCRHLA0A096LP55 91 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 RPS6KA5O75582 802 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 RECQL4O94761 1208 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 UQCRHP07919 91 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 THPOP40225 353 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 YARSP54577 528 aaKnown RBP18.08■□□□□ 0.48
CLN3-252ENST00000636907 PTPN11Q06124 597 aaPredicted RBP18.08■□□□□ 0.48
CLN3-252ENST00000636907 TMEM270Q6UE05 265 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 TAF4BQ92750 862 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 KIF12Q96FN5 646 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 GLT1D1Q96MS3 346 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 NOX5Q96PH1 765 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 APOL6Q9BWW8 343 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 CNTN6Q9UQ52 1028 aa18.08■□□□□ 0.48
CLN3-252ENST00000636907 FAM170AA1A519 330 aa18.07■□□□□ 0.48
CLN3-252ENST00000636907 AKAP5P24588 427 aa18.07■□□□□ 0.48
CLN3-252ENST00000636907 POLR2BP30876 1174 aaKnown RBP18.07■□□□□ 0.48
CLN3-252ENST00000636907 ASPAP45381 313 aa18.07■□□□□ 0.48
CLN3-252ENST00000636907 NAP1L1P55209 391 aaKnown RBP18.07■□□□□ 0.48
CLN3-252ENST00000636907 RBBP8NLQ8NC74 664 aaPredicted RBP18.07■□□□□ 0.48
CLN3-252ENST00000636907 ZMAT2Q96NC0 199 aaKnown RBP18.07■□□□□ 0.48
CLN3-252ENST00000636907 RNF39Q9H2S5 420 aa18.07■□□□□ 0.48
CLN3-252ENST00000636907 DPP3Q9NY33 737 aa18.07■□□□□ 0.48
CLN3-252ENST00000636907 POLIQ9UNA4 740 aa18.07■□□□□ 0.48
CLN3-252ENST00000636907 ST3GAL5Q9UNP4 418 aa18.07■□□□□ 0.48
CLN3-252ENST00000636907 IPPQ9Y573 584 aa18.07■□□□□ 0.48
CLN3-252ENST00000636907 MRFAP1Q9Y605 127 aa18.07■□□□□ 0.48
CLN3-252ENST00000636907 A0A1W2PQ45 241 aaPredicted RBP18.06■□□□□ 0.48
CLN3-252ENST00000636907 A0A1W2PQY0 241 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 ENC1O14682 589 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 ATP1A1P05023 1023 aaKnown RBP18.06■□□□□ 0.48
CLN3-252ENST00000636907 ZNF132P52740 706 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 BPIFB4P59827 614 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 PTK7Q13308 1070 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 TWF2Q6IBS0 349 aaKnown RBP18.06■□□□□ 0.48
CLN3-252ENST00000636907 ALKAL1Q6UXT8 129 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 SCARA5Q6ZMJ2 495 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 SMG8Q8ND04 991 aaKnown RBP18.06■□□□□ 0.48
CLN3-252ENST00000636907 ALS2CR12Q96Q35 445 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 BEGAINQ9BUH8 593 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLN3-252ENST00000636907 NXF1Q9UBU9 619 aaKnown RBP18.06■□□□□ 0.48
CLN3-252ENST00000636907 ITGA11Q9UKX5 1188 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 AGAP1Q9UPQ3 857 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 NOD1Q9Y239 953 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 DERAQ9Y315 318 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 PCDHB2Q9Y5E7 798 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 WEE2P0C1S8 567 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 TMEM253P0C7T8 217 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 CD58P19256 250 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 ATICP31939 592 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 NFX1Q12986 1120 aaKnown RBP18.06■□□□□ 0.48
CLN3-252ENST00000636907 TRIM71Q2Q1W2 868 aaKnown RBP18.06■□□□□ 0.48
CLN3-252ENST00000636907 ZNF667Q5HYK9 610 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 OSBPL7Q9BZF2 842 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 ISCUQ9H1K1 167 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 VRTNQ9H8Y1 702 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 CISHQ9NSE2 258 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 CNTN3Q9P232 1028 aa18.06■□□□□ 0.48
CLN3-252ENST00000636907 TRIP11Q15643 1979 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 ANKRD62A6NC57 917 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 RTN2O75298 545 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 GZMAP12544 262 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 ABCB4P21439 1286 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 GTF2F1P35269 517 aaKnown RBP eCLIP18.05■□□□□ 0.48
CLN3-252ENST00000636907 RBP5P82980 135 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 AMPD2Q01433 879 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 ZBTB6Q15916 424 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 WDR72Q3MJ13 1102 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 GLRA4Q5JXX5 417 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 ZNF677Q86XU0 584 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 ARRDC4Q8NCT1 418 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 BCO2Q9BYV7 579 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 AGO3Q9H9G7 860 aaKnown RBP18.05■□□□□ 0.48
CLN3-252ENST00000636907 KLK14Q9P0G3 267 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 PARP2Q9UGN5 583 aa18.05■□□□□ 0.48
CLN3-252ENST00000636907 NCANO14594 1321 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 A0A0A6YYK5 440 aaPredicted RBP18.04■□□□□ 0.48
CLN3-252ENST00000636907 ANO9A1A5B4 782 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 SLU7O95391 586 aaKnown RBP18.04■□□□□ 0.48
CLN3-252ENST00000636907 FTLP02792 175 aaPredicted RBP18.04■□□□□ 0.48
CLN3-252ENST00000636907 GNA15P30679 374 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 RAP1GAPP47736 663 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 CTNNBL1Q8WYA6 563 aaPredicted RBP18.04■□□□□ 0.48
CLN3-252ENST00000636907 ARHGEF26Q96DR7 871 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 HPDLQ96IR7 371 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 THAP2Q9H0W7 228 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 UNC93B1Q9H1C4 597 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 STARD7Q9NQZ5 370 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 RNF19AQ9NV58 838 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 TUBGCP4Q9UGJ1 667 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 PTPN22Q9Y2R2 807 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 JRKLQ9Y4A0 524 aa18.04■□□□□ 0.48
CLN3-252ENST00000636907 PCDHGC5Q9Y5F6 944 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms