RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZNF512Q96ME7 567 aaPredicted RBP16.07■□□□□ 0.16
CLN3-249ENST00000636685 DDX25Q9UHL0 483 aaKnown RBP16.07■□□□□ 0.16
CLN3-249ENST00000636685 KLK13Q9UKR3 277 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 SLC8A2Q9UPR5 921 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 NEUROG3Q9Y4Z2 214 aa16.07■□□□□ 0.16
CLN3-249ENST00000636685 CCDC196A0A1B0GTZ2 297 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 BCLAF3A2AJT9 711 aaKnown RBP16.06■□□□□ 0.16
CLN3-249ENST00000636685 TTLL13PA6NNM8 815 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 DCLK1O15075 740 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 ARL2P36404 184 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 RCAN1P53805 252 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 PDZD3Q86UT5 571 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 ELMOD1Q8N336 334 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 C3orf58Q8NDZ4 430 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 E2F7Q96AV8 911 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 DYDC2Q96IM9 177 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 LRRC3BQ96PB8 259 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 NFKBIZQ9BYH8 718 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 TMEM9BQ9NQ34 198 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 ASAH2Q9NR71 780 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 MSRB2Q9Y3D2 182 aa16.06■□□□□ 0.16
CLN3-249ENST00000636685 NUP210Q8TEM1 1887 aaPredicted RBP16.05■□□□□ 0.16
CLN3-249ENST00000636685 EPHA5P54756 1037 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 NLRP5P59047 1200 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 AKAP17AQ02040 695 aaKnown RBP16.05■□□□□ 0.16
CLN3-249ENST00000636685 CYP4A11Q02928 519 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 TWF1Q12792 350 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 AAMPQ13685 434 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 CTTNQ14247 550 aaKnown RBP16.05■□□□□ 0.16
CLN3-249ENST00000636685 ELF2Q15723 593 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 UAP1L1Q3KQV9 507 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 GLRA4Q5JXX5 417 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 NOSTRINQ8IVI9 506 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 PDZD7Q9H5P4 517 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 GOLGA2P5Q9HBQ8 144 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 GPSM3Q9Y4H4 160 aa16.05■□□□□ 0.16
CLN3-249ENST00000636685 CDX4O14627 284 aaPredicted RBP16.04■□□□□ 0.16
CLN3-249ENST00000636685 TRAPPC3O43617 180 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 RHOBTB1O94844 696 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 TNK2Q07912 1038 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 EPHA7Q15375 998 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 UPP1Q16831 310 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 ADCK5Q3MIX3 580 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 STXBP5Q5T5C0 1151 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 MOXD1Q6UVY6 613 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 HHIPQ96QV1 700 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 SLC26A6Q9BXS9 759 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 C22orf23Q9BZE7 217 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 GPR88Q9GZN0 384 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 USP20Q9Y2K6 914 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 GDAQ9Y2T3 454 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 MAST4O15021 2626 aa16.04■□□□□ 0.16
CLN3-249ENST00000636685 PATE3B3GLJ2 98 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 FGD1P98174 961 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 NCAPH2Q6IBW4 605 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 PPP4R3CPQ6ZMV5 832 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 PROSER1Q86XN7 944 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 ARID3BQ8IVW6 561 aaPredicted RBP16.03■□□□□ 0.16
CLN3-249ENST00000636685 LEMD2Q8NC56 503 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 PPP1R10Q96QC0 940 aaKnown RBP16.03■□□□□ 0.16
CLN3-249ENST00000636685 POLR3FQ9H1D9 316 aaPredicted RBP16.03■□□□□ 0.16
CLN3-249ENST00000636685 ZSWIM4Q9H7M6 989 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 KCNMB3Q9NPA1 279 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 ANO2Q9NQ90 1003 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 FBXL5Q9UKA1 691 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 PCDHA4Q9UN74 947 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 PI4KAP42356 2102 aa16.03■□□□□ 0.16
CLN3-249ENST00000636685 GON4LQ3T8J9 2241 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 A0A1W2PRU2 124 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 LRRIQ4A6NIV6 560 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 KHNYNO15037 678 aaKnown RBP16.02■□□□□ 0.16
CLN3-249ENST00000636685 N4BP3O15049 544 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 CAPNS1P04632 268 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 NTRK3Q16288 839 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 TMEM132AQ24JP5 1023 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 INF2Q27J81 1249 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 COL28A1Q2UY09 1125 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 ARHGAP29Q52LW3 1261 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 FSTL4Q6MZW2 842 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 TPH2Q8IWU9 490 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 FAM20AQ96MK3 541 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 BBC3Q96PG8 261 aaPredicted RBP16.02■□□□□ 0.16
CLN3-249ENST00000636685 TMEM209Q96SK2 561 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 ESYT1Q9BSJ8 1104 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 LRRC3Q9BY71 257 aa16.02■□□□□ 0.16
CLN3-249ENST00000636685 PRMT7Q9NVM4 692 aaPredicted RBP16.02■□□□□ 0.16
CLN3-249ENST00000636685 ACACAQ13085 2346 aa16.02■□□□□ 0.15
CLN3-249ENST00000636685 CELSR3Q9NYQ7 3312 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 ASXL3Q9C0F0 2248 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 SPAARA0A1B0GVQ0 90 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 ATG13O75143 517 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 DGAT1O75907 488 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 EEF1DP3Q658K8 133 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 TPGS2Q68CL5 300 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 HAUS6Q7Z4H7 955 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 TMC8Q8IU68 726 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 RASEFQ8IZ41 740 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 CAMKK1Q8N5S9 505 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 PRIMPOLQ96LW4 560 aa16.01■□□□□ 0.15
CLN3-249ENST00000636685 UROC1Q96N76 676 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms