RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 SPEM2Q0P670 501 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 MAPK7Q13164 816 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 PPP2R5AQ15172 486 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 SLC10A6Q3KNW5 377 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 TPGS2Q68CL5 300 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 LAIR1Q6GTX8 287 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 MFSD6LQ8IWD5 586 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 TMEM130Q8N3G9 435 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 DEPTORQ8TB45 409 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 FAM3CQ92520 227 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 WASF1Q92558 559 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 SMARCD2Q92925 531 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 IRF7Q92985 503 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 GTF3C6Q969F1 213 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 C18orf25Q96B23 403 aaPredicted RBP6.71□□□□□ -1.34
VRK3-220ENST00000600259 ZBTB45Q96K62 511 aaPredicted RBP6.71□□□□□ -1.34
VRK3-220ENST00000600259 SUSD3Q96L08 255 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 NTPCRQ9BSD7 190 aaKnown RBP6.71□□□□□ -1.34
VRK3-220ENST00000600259 IER2Q9BTL4 223 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 MKNK1Q9BUB5 465 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 CRISPLD1Q9H336 500 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 TMEM134Q9H6X4 195 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 BRD9Q9H8M2 597 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 CYP4F11Q9HBI6 524 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 ARHGAP28Q9P2N2 729 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 AFF4Q9UHB7 1163 aaKnown RBP6.71□□□□□ -1.34
VRK3-220ENST00000600259 NDRG2Q9UN36 371 aaKnown RBP6.71□□□□□ -1.34
VRK3-220ENST00000600259 INSL5Q9Y5Q6 135 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.71□□□□□ -1.34
VRK3-220ENST00000600259 CACNA1GO43497 2377 aa6.71□□□□□ -1.34
VRK3-220ENST00000600259 ARHGEF35A5YM69 484 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 HEPACAM2A8MVW5 462 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 PODXLO00592 558 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 GDF9O60383 454 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 LRP3O75074 770 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 OAZ2O95190 189 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 LRG1P02750 347 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 CCNE1P24864 410 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 HOXA6P31267 233 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 ELF1P32519 619 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 NPTX2P47972 431 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 CXCL12P48061 93 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 CCR3P51677 355 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 NRLP54845 237 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 OSTNP61366 133 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 FCHO2Q0JRZ9 810 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 SRSF5Q13243 272 aaKnown RBP6.7□□□□□ -1.34
VRK3-220ENST00000600259 PTGDRQ13258 359 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 ZNF174Q15697 407 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 ZBTB6Q15916 424 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 LPAL2Q16609 132 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 TXNDC11Q6PKC3 985 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 RNF19BQ6ZMZ0 732 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 TMC8Q8IU68 726 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 SPEM1Q8N4L4 309 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 SHKBP1Q8TBC3 707 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 DEPDC1BQ8WUY9 529 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 DDX12PQ92771 950 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 KIFAP3Q92845 792 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 SECISBP2LQ93073 1101 aaKnown RBP6.7□□□□□ -1.34
VRK3-220ENST00000600259 CCDC43Q96MW1 224 aaKnown RBP6.7□□□□□ -1.34
VRK3-220ENST00000600259 TBC1D32Q96NH3 1257 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 TARS2Q9BW92 718 aaKnown RBP6.7□□□□□ -1.34
VRK3-220ENST00000600259 DNAJC25Q9H1X3 360 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 BHMT2Q9H2M3 363 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 BRMS1Q9HCU9 246 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 SEMA4GQ9NTN9 838 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 CNTN3Q9P232 1028 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 CDV3Q9UKY7 258 aaKnown RBP6.7□□□□□ -1.34
VRK3-220ENST00000600259 MAFFQ9ULX9 164 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 USP18Q9UMW8 372 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 PIAS3Q9Y6X2 628 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 COL4A2P08572 1712 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 MIA3Q5JRA6 1907 aa6.7□□□□□ -1.34
VRK3-220ENST00000600259 SDK1Q7Z5N4 2213 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 MYBPHLA2RUH7 354 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 CHURC1-FNTBB4DL54 471 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 H7C4K7 107 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 M0QZQ0 153 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 PRRG1O14668 218 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 CHADO15335 359 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 OR52Z1P0C646 297 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 PRR29P0C7W0 189 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 MCF2P10911 925 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 LRPAP1P30533 357 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 SOX9P48436 509 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 FNTBP49356 437 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 AARSP49588 968 aaKnown RBP eCLIP6.69□□□□□ -1.34
VRK3-220ENST00000600259 FXR2P51116 673 aaKnown RBP eCLIP6.69□□□□□ -1.34
VRK3-220ENST00000600259 FOSBP53539 338 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 ARPP19P56211 112 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 PEX3P56589 373 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 ANAPC15P60006 121 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 TWF1Q12792 350 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 ORC2Q13416 577 aaPredicted RBP6.69□□□□□ -1.34
VRK3-220ENST00000600259 SIM2Q14190 667 aaPredicted RBP6.69□□□□□ -1.34
VRK3-220ENST00000600259 PDIA5Q14554 519 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 ANKRD1Q15327 319 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 TEAD2Q15562 447 aa6.69□□□□□ -1.34
VRK3-220ENST00000600259 CSRP2Q16527 193 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms