RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CITO14578 2027 aa10.67□□□□□ -0.7
VRK3-216ENST00000599342 MYH11P35749 1972 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 DOCK8Q8NF50 2099 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 TTC26A0AVF1 554 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 PROB1E7EW31 1015 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 ZNF197O14709 1029 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 OGTO15294 1046 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 TBC1D4O60343 1298 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 PIGRP01833 764 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 CYP3A5P20815 502 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 LRPAP1P30533 357 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 TXLNAP40222 546 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 TNFSF9P41273 254 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 ZNF131P52739 623 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 GPC5P78333 572 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 PFKPQ01813 784 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 GRIN1Q05586 938 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 ADCY1Q08828 1119 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 MRPL58Q14197 206 aaKnown RBP10.66□□□□□ -0.7
VRK3-216ENST00000599342 SPECC1Q5M775 1068 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 IQCEQ6IPM2 695 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 DSTYKQ6XUX3 929 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 PDZD4Q76G19 769 aaPredicted RBP10.66□□□□□ -0.7
VRK3-216ENST00000599342 USP37Q86T82 979 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 TCEAL8Q8IYN2 117 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 BEST2Q8NFU1 509 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 NKD2Q969F2 451 aaPredicted RBP10.66□□□□□ -0.7
VRK3-216ENST00000599342 FAM212AQ96EL1 285 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 TSPAN18Q96SJ8 248 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 CORO1BQ9BR76 489 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 MSTO1Q9BUK6 570 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 RPP25Q9BUL9 199 aaKnown RBP10.66□□□□□ -0.7
VRK3-216ENST00000599342 OXCT2Q9BYC2 517 aaPredicted RBP10.66□□□□□ -0.7
VRK3-216ENST00000599342 CCSER1Q9C0I3 900 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 HAPLN2Q9GZV7 340 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 BLOC1S4Q9NUP1 217 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 GDE1Q9NZC3 331 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 CCDC39Q9UFE4 941 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 SIT1Q9Y3P8 196 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 INSL5Q9Y5Q6 135 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 TRIP11Q15643 1979 aa10.66□□□□□ -0.7
VRK3-216ENST00000599342 LACTBL1A8MY62 500 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 M0QZQ0 153 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 DCNP07585 359 aaKnown RBP10.65□□□□□ -0.7
VRK3-216ENST00000599342 CEBPBP17676 345 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 TWF1Q12792 350 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 SNW1Q13573 536 aaKnown RBP10.65□□□□□ -0.7
VRK3-216ENST00000599342 CUL4AQ13619 759 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 MLF2Q15773 248 aaPredicted RBP10.65□□□□□ -0.7
VRK3-216ENST00000599342 ENOX2Q16206 610 aaKnown RBP10.65□□□□□ -0.7
VRK3-216ENST00000599342 SLC5A9Q2M3M2 681 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 CYP4A22Q5TCH4 519 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 FRMD5Q7Z6J6 570 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 MAP4K3Q8IVH8 894 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 CD302Q8IX05 232 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 PJA1Q8NG27 643 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 LRRC15Q8TF66 581 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 MCRS1Q96EZ8 462 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 ZNF512Q96ME7 567 aaPredicted RBP10.65□□□□□ -0.7
VRK3-216ENST00000599342 AVENQ9NQS1 362 aaPredicted RBP10.65□□□□□ -0.7
VRK3-216ENST00000599342 STK17AQ9UEE5 414 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 AFF4Q9UHB7 1163 aaKnown RBP10.65□□□□□ -0.7
VRK3-216ENST00000599342 MAFFQ9ULX9 164 aa10.65□□□□□ -0.7
VRK3-216ENST00000599342 A0A0B4J269 797 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 KANSL1LA0AUZ9 987 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 PRR23AA6NEV1 266 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 FAM189A1O60320 539 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 ECI2O75521 394 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 SEC24AO95486 1093 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 ODC1P11926 461 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 NMT1P30419 496 aaKnown RBP10.64□□□□□ -0.71
VRK3-216ENST00000599342 DDIT3P35638 169 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 STARD6P59095 220 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 GTF2BQ00403 316 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 PRKCQQ04759 706 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 PLD1Q13393 1074 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 TMEM132DQ14C87 1099 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 ZBTB6Q15916 424 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 SLC44A4Q53GD3 710 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 ZBTB41Q5SVQ8 909 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 JADE1Q6IE81 842 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 SLFN12LQ6IEE8 588 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 RNF19BQ6ZMZ0 732 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 DYMQ7RTS9 669 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 ASCL5Q7RTU5 278 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 LEMD2Q8NC56 503 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 EPSTI1Q96J88 318 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 FOXQ1Q9C009 403 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 ASAH2Q9NR71 780 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 TIMM13Q9Y5L4 95 aaPredicted RBP10.64□□□□□ -0.71
VRK3-216ENST00000599342 CLIC4Q9Y696 253 aa10.64□□□□□ -0.71
VRK3-216ENST00000599342 PDCD11Q14690 1871 aaKnown RBP10.64□□□□□ -0.71
VRK3-216ENST00000599342 MYH15Q9Y2K3 1946 aa10.63□□□□□ -0.71
VRK3-216ENST00000599342 OR6C75A6NL08 312 aa10.63□□□□□ -0.71
VRK3-216ENST00000599342 MICAL2O94851 1124 aa10.63□□□□□ -0.71
VRK3-216ENST00000599342 OAZ2O95190 189 aa10.63□□□□□ -0.71
VRK3-216ENST00000599342 NFICP08651 508 aa10.63□□□□□ -0.71
VRK3-216ENST00000599342 MYL4P12829 197 aa10.63□□□□□ -0.71
VRK3-216ENST00000599342 PAX3P23760 479 aa10.63□□□□□ -0.71
VRK3-216ENST00000599342 AARSP49588 968 aaKnown RBP eCLIP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms