RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 RPL9P32969 192 aaKnown RBP10.92□□□□□ -0.66
LIG1-209ENST00000596104 CCT6AP40227 531 aaKnown RBP10.92□□□□□ -0.66
LIG1-209ENST00000596104 FXR2P51116 673 aaKnown RBP eCLIP10.92□□□□□ -0.66
LIG1-209ENST00000596104 PEX3P56589 373 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 MAPK7Q13164 816 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 GAS6Q14393 721 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 SAFBQ15424 915 aaKnown RBP eCLIP10.92□□□□□ -0.66
LIG1-209ENST00000596104 CTXN3Q4LDR2 81 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 TTC38Q5R3I4 469 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 PDZD4Q76G19 769 aaPredicted RBP10.92□□□□□ -0.66
LIG1-209ENST00000596104 DEPDC1BQ8WUY9 529 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 FAM3CQ92520 227 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 IRF7Q92985 503 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 C18orf25Q96B23 403 aaPredicted RBP10.92□□□□□ -0.66
LIG1-209ENST00000596104 MRPL4Q9BYD3 311 aaKnown RBP10.92□□□□□ -0.66
LIG1-209ENST00000596104 DDX19AQ9NUU7 478 aaKnown RBP10.92□□□□□ -0.66
LIG1-209ENST00000596104 AFF4Q9UHB7 1163 aaKnown RBP10.92□□□□□ -0.66
LIG1-209ENST00000596104 CDV3Q9UKY7 258 aaKnown RBP10.92□□□□□ -0.66
LIG1-209ENST00000596104 USP18Q9UMW8 372 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 KIAA1024Q9UPX6 916 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 PIAS3Q9Y6X2 628 aa10.92□□□□□ -0.66
LIG1-209ENST00000596104 CCDC169A6NNP5 214 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 CHRNB1P11230 501 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 GJA1P17302 382 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 PSMC3P17980 439 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 VIPR2P41587 438 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 TWF1Q12792 350 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 CYP4A22Q5TCH4 519 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 ZNF280DQ6N043 979 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 MPZL3Q6UWV2 235 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 IGSF22Q8N9C0 903 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 LEMD2Q8NC56 503 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 BEST2Q8NFU1 509 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 ZSCAN18Q8TBC5 510 aaPredicted RBP10.91□□□□□ -0.66
LIG1-209ENST00000596104 DDX12PQ92771 950 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 TBC1D32Q96NH3 1257 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 ACAP3Q96P50 834 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 RTKNQ9BST9 563 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 LRRC3Q9BY71 257 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 FOXP1Q9H334 677 aaPredicted RBP10.91□□□□□ -0.66
LIG1-209ENST00000596104 LMAN1LQ9HAT1 526 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 GMEB2Q9UKD1 530 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 MAFFQ9ULX9 164 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 NUB1Q9Y5A7 615 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 MIA3Q5JRA6 1907 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 CACNA1BQ00975 2339 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 ACACBO00763 2458 aa10.91□□□□□ -0.66
LIG1-209ENST00000596104 DCDC2BA2VCK2 349 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 HIP1RO75146 1068 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 VNN2O95498 520 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 MYL4P12829 197 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 TRAPPC10P48553 1259 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 CCR3P51677 355 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 NEK4P51957 841 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 NRLP54845 237 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 MLLT6P55198 1093 aaPredicted RBP10.9□□□□□ -0.66
LIG1-209ENST00000596104 SATB1Q01826 763 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 DMP1Q13316 513 aaPredicted RBP10.9□□□□□ -0.66
LIG1-209ENST00000596104 PDIA5Q14554 519 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 NBR1Q14596 966 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 TEAD2Q15562 447 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 LPAL2Q16609 132 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 SLC10A6Q3KNW5 377 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 LAIR1Q6GTX8 287 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 IQCEQ6IPM2 695 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 RNF19BQ6ZMZ0 732 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 MFSD6LQ8IWD5 586 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 TMEM130Q8N3G9 435 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 CELF5Q8N6W0 485 aaKnown RBP10.9□□□□□ -0.66
LIG1-209ENST00000596104 SHKBP1Q8TBC3 707 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 SNX29Q8TEQ0 813 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 RSPRY1Q96DX4 576 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 C8orf76Q96K31 380 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 ZBTB45Q96K62 511 aaPredicted RBP10.9□□□□□ -0.66
LIG1-209ENST00000596104 ZNF512Q96ME7 567 aaPredicted RBP10.9□□□□□ -0.66
LIG1-209ENST00000596104 NTPCRQ9BSD7 190 aaKnown RBP10.9□□□□□ -0.66
LIG1-209ENST00000596104 RUSC1Q9BVN2 902 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 KMT5AQ9NQR1 393 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 LRWD1Q9UFC0 647 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 TUBGCP4Q9UGJ1 667 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 PCDHB8Q9UN66 801 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 RBM19Q9Y4C8 960 aaKnown RBP10.9□□□□□ -0.66
LIG1-209ENST00000596104 YIPF1Q9Y548 306 aa10.9□□□□□ -0.66
LIG1-209ENST00000596104 COL4A2P08572 1712 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 PP2D1A8MPX8 630 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 HEPACAM2A8MVW5 462 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 E9PMD0 336 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 ZNF263O14978 683 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 KRT37O76014 449 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 RETP07949 1114 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 HARSP12081 509 aaKnown RBP10.89□□□□□ -0.67
LIG1-209ENST00000596104 CCNE1P24864 410 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 MCM4P33991 863 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 CXCL12P48061 93 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 AARSP49588 968 aaKnown RBP eCLIP10.89□□□□□ -0.67
LIG1-209ENST00000596104 DMWDQ09019 674 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 SPEM2Q0P670 501 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 PTGDRQ13258 359 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 PPP2R5DQ14738 602 aa10.89□□□□□ -0.67
LIG1-209ENST00000596104 SEZ6Q53EL9 994 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms