RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 DHX8Q14562 1220 aaKnown RBP11.42□□□□□ -0.58
LIG3-212ENST00000590181 ZBTB6Q15916 424 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 PSMD5Q16401 504 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 SLC10A6Q3KNW5 377 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 LIN9Q5TKA1 542 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 SLC8B1Q6J4K2 584 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 TAS1R1Q7RTX1 841 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 LNX1Q8TBB1 728 aaPredicted RBP11.42□□□□□ -0.58
LIG3-212ENST00000590181 ACCSQ96QU6 501 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 STRA6Q9BX79 667 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 PRKD2Q9BZL6 878 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 MRPL44Q9H9J2 332 aaKnown RBP11.42□□□□□ -0.58
LIG3-212ENST00000590181 POLD4Q9HCU8 107 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 MAN1C1Q9NR34 630 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 FAM13BQ9NYF5 915 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 ANKFY1Q9P2R3 1169 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 C2CD2Q9Y426 696 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 NUB1Q9Y5A7 615 aa11.42□□□□□ -0.58
LIG3-212ENST00000590181 PODXLO00592 558 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 NARSO43776 548 aaKnown RBP11.41□□□□□ -0.58
LIG3-212ENST00000590181 ZMYND10O75800 440 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 IL18RAPO95256 599 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 F13A1P00488 732 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 GARTP22102 1010 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 CEBPZQ03701 1054 aaKnown RBP11.41□□□□□ -0.58
LIG3-212ENST00000590181 GRIN1Q05586 938 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 RTP2Q5QGT7 225 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 CEP57Q86XR8 500 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 KIAA2013Q8IYS2 634 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 BEST2Q8NFU1 509 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 ZNF461Q8TAF7 563 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 CACTINQ8WUQ7 758 aaKnown RBP11.41□□□□□ -0.58
LIG3-212ENST00000590181 DNAJC19Q96DA6 116 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 RMDN1Q96DB5 314 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 SUSD3Q96L08 255 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 FIZ1Q96SL8 496 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 HINFPQ9BQA5 517 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 CLSTN3Q9BQT9 956 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 MSTO1Q9BUK6 570 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 ZHX3Q9H4I2 956 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 KCNK12Q9HB15 430 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 KIAA1586Q9HCI6 787 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 AVENQ9NQS1 362 aaPredicted RBP11.41□□□□□ -0.58
LIG3-212ENST00000590181 KBTBD4Q9NVX7 518 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 CGNQ9P2M7 1197 aaKnown RBP11.41□□□□□ -0.58
LIG3-212ENST00000590181 HSFX1Q9UBD0 423 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 MTRRQ9UBK8 725 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 FBXW11Q9UKB1 542 aa11.41□□□□□ -0.58
LIG3-212ENST00000590181 AGO2Q9UKV8 859 aaKnown RBP11.41□□□□□ -0.58
LIG3-212ENST00000590181 NPHP3-ACAD11A0A0J9YXS1 232 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 PVALEFA0A1B0GWK0 134 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 M0QZQ0 153 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 PPP1R37O75864 691 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 MICAL2O94851 1124 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 OAZ2O95190 189 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 LMNAP02545 664 aaKnown RBP11.4□□□□□ -0.58
LIG3-212ENST00000590181 CFHP08603 1231 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 ELF1P32519 619 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 OSTNP61366 133 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 SMARCB1Q12824 385 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 MRPL58Q14197 206 aaKnown RBP11.4□□□□□ -0.58
LIG3-212ENST00000590181 BECN1Q14457 450 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 SURF1Q15526 300 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 L1TD1Q5T7N2 865 aaKnown RBP11.4□□□□□ -0.58
LIG3-212ENST00000590181 ADALQ6DHV7 355 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 DGLUCYQ7Z3D6 616 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 LEMD2Q8NC56 503 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 SMG7Q92540 1137 aaKnown RBP11.4□□□□□ -0.58
LIG3-212ENST00000590181 CCDC34Q96HJ3 373 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 ZBTB45Q96K62 511 aaPredicted RBP11.4□□□□□ -0.58
LIG3-212ENST00000590181 CLIC6Q96NY7 704 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 PAAF1Q9BRP4 392 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 PIDD1Q9HB75 910 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 PANK4Q9NVE7 773 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 EPS15L1Q9UBC2 864 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 CPSF3Q9UKF6 684 aaKnown RBP11.4□□□□□ -0.58
LIG3-212ENST00000590181 RCOR1Q9UKL0 485 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 DSEQ9UL01 958 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 KCNH3Q9ULD8 1083 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 PCDHB8Q9UN66 801 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 R4GN57 208 aa11.4□□□□□ -0.58
LIG3-212ENST00000590181 CLUHO75153 1309 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 VWA8A3KMH1 1905 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 MYMKA6NI61 221 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 STK25O00506 426 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 EIF3DO15371 548 aaKnown RBP eCLIP11.39□□□□□ -0.59
LIG3-212ENST00000590181 FAM189A1O60320 539 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 ABLIM3O94929 683 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 ATF2P15336 505 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 TYMPP19971 482 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 GBP2P32456 591 aaPredicted RBP11.39□□□□□ -0.59
LIG3-212ENST00000590181 PNPLA4P41247 253 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 ME1P48163 572 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 AARSP49588 968 aaKnown RBP eCLIP11.39□□□□□ -0.59
LIG3-212ENST00000590181 GLRA4Q5JXX5 417 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 SPECC1Q5M775 1068 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 PPM1LQ5SGD2 360 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 SPATA1Q5VX52 437 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 ZNF280DQ6N043 979 aa11.39□□□□□ -0.59
LIG3-212ENST00000590181 USP49Q70CQ1 688 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms