RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 KIF2CQ99661 725 aa12.72□□□□□ -0.37
LIG3-207ENST00000586119 LLPHQ9BRT6 129 aaKnown RBP12.72□□□□□ -0.37
LIG3-207ENST00000586119 MRPL4Q9BYD3 311 aaKnown RBP12.72□□□□□ -0.37
LIG3-207ENST00000586119 OSBPL6Q9BZF3 934 aa12.72□□□□□ -0.37
LIG3-207ENST00000586119 GDE1Q9NZC3 331 aa12.72□□□□□ -0.37
LIG3-207ENST00000586119 TUBGCP4Q9UGJ1 667 aa12.72□□□□□ -0.37
LIG3-207ENST00000586119 FBXO4Q9UKT5 387 aa12.72□□□□□ -0.37
LIG3-207ENST00000586119 NDRG2Q9UN36 371 aaKnown RBP12.72□□□□□ -0.37
LIG3-207ENST00000586119 DNM3Q9UQ16 869 aa12.72□□□□□ -0.37
LIG3-207ENST00000586119 INSL5Q9Y5Q6 135 aa12.72□□□□□ -0.37
LIG3-207ENST00000586119 MCF2P10911 925 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 MYL4P12829 197 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 GUCY2FP51841 1108 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 TWF1Q12792 350 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 MTAPQ13126 283 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 ORC2Q13416 577 aaPredicted RBP12.71□□□□□ -0.37
LIG3-207ENST00000586119 GNL2Q13823 731 aaKnown RBP12.71□□□□□ -0.37
LIG3-207ENST00000586119 ZNF528Q3MIS6 628 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 MPZL3Q6UWV2 235 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 VITQ6UXI7 678 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 ZNF852Q6ZMS4 543 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 TCEAL8Q8IYN2 117 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 FAM184AQ8NB25 1140 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 ELSPBP1Q96BH3 223 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 RSPRY1Q96DX4 576 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 BACH2Q9BYV9 841 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 CRISPLD1Q9H336 500 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 ZFP14Q9HCL3 533 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 AVENQ9NQS1 362 aaPredicted RBP12.71□□□□□ -0.37
LIG3-207ENST00000586119 TOPORSQ9NS56 1045 aaPredicted RBP12.71□□□□□ -0.37
LIG3-207ENST00000586119 CNTN3Q9P232 1028 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 NOL7Q9UMY1 257 aaKnown RBP12.71□□□□□ -0.37
LIG3-207ENST00000586119 NUB1Q9Y5A7 615 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 CACNA1AO00555 2505 aa12.71□□□□□ -0.37
LIG3-207ENST00000586119 ATG2BQ96BY7 2078 aa12.71□□□□□ -0.38
LIG3-207ENST00000586119 COL4A2P08572 1712 aa12.71□□□□□ -0.38
LIG3-207ENST00000586119 SPTBN2O15020 2390 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 H7C4K7 107 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 SYN3O14994 580 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 LILRB5O75023 590 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 U2AF2P26368 475 aaKnown RBP eCLIP12.7□□□□□ -0.38
LIG3-207ENST00000586119 GDI1P31150 447 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 RPL9P32969 192 aaKnown RBP12.7□□□□□ -0.38
LIG3-207ENST00000586119 MCM4P33991 863 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 TNFSF9P41273 254 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 TRAPPC10P48553 1259 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 DMP1Q13316 513 aaPredicted RBP12.7□□□□□ -0.38
LIG3-207ENST00000586119 TEAD2Q15562 447 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 LPAL2Q16609 132 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 KRT79Q5XKE5 535 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 RTL10Q7L3V2 364 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 MAP4K3Q8IVH8 894 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 ZBTB44Q8NCP5 570 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 TMEM161BQ8NDZ6 487 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 ATRIPQ8WXE1 791 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 NELL1Q92832 810 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 SUSD3Q96L08 255 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 ASB16Q96NS5 453 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 PGLYRP2Q96PD5 576 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 NTPCRQ9BSD7 190 aaKnown RBP12.7□□□□□ -0.38
LIG3-207ENST00000586119 BRD9Q9H8M2 597 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 ZNF334Q9HCZ1 680 aaPredicted RBP12.7□□□□□ -0.38
LIG3-207ENST00000586119 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.7□□□□□ -0.38
LIG3-207ENST00000586119 SLC38A7Q9NVC3 462 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 DLL3Q9NYJ7 618 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 ANKFY1Q9P2R3 1169 aa12.7□□□□□ -0.38
LIG3-207ENST00000586119 SDK1Q7Z5N4 2213 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 PPEF2O14830 753 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 CXCL8P10145 99 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 TGM1P22735 817 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 GAS6Q14393 721 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 PUM1Q14671 1186 aaKnown RBP eCLIP12.69□□□□□ -0.38
LIG3-207ENST00000586119 WDR44Q5JSH3 913 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 CYP4A22Q5TCH4 519 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 PDZD4Q76G19 769 aaPredicted RBP12.69□□□□□ -0.38
LIG3-207ENST00000586119 APBB1IPQ7Z5R6 666 aaPredicted RBP12.69□□□□□ -0.38
LIG3-207ENST00000586119 SHKBP1Q8TBC3 707 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 LRRC15Q8TF66 581 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 ZNF512Q96ME7 567 aaPredicted RBP12.69□□□□□ -0.38
LIG3-207ENST00000586119 TMEM209Q96SK2 561 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 NELL2Q99435 816 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 TRMT61BQ9BVS5 477 aaKnown RBP12.69□□□□□ -0.38
LIG3-207ENST00000586119 LRRC3Q9BY71 257 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 LMAN1LQ9HAT1 526 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 ZSCAN32Q9NX65 697 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 NCDNQ9UBB6 729 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 AFF4Q9UHB7 1163 aaKnown RBP12.69□□□□□ -0.38
LIG3-207ENST00000586119 PCDHB8Q9UN66 801 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 SLC27A5Q9Y2P5 690 aa12.69□□□□□ -0.38
LIG3-207ENST00000586119 RBM19Q9Y4C8 960 aaKnown RBP12.69□□□□□ -0.38
LIG3-207ENST00000586119 KIF26AQ9ULI4 1882 aaPredicted RBP12.69□□□□□ -0.38
LIG3-207ENST00000586119 SCN1AP35498 2009 aa12.68□□□□□ -0.38
LIG3-207ENST00000586119 RALGAPA1Q6GYQ0 2036 aa12.68□□□□□ -0.38
LIG3-207ENST00000586119 ZNF197O14709 1029 aa12.68□□□□□ -0.38
LIG3-207ENST00000586119 SOAT2O75908 522 aa12.68□□□□□ -0.38
LIG3-207ENST00000586119 MAPTP10636 758 aaKnown RBP12.68□□□□□ -0.38
LIG3-207ENST00000586119 TDGF1P13385 188 aa12.68□□□□□ -0.38
LIG3-207ENST00000586119 CCNE1P24864 410 aa12.68□□□□□ -0.38
LIG3-207ENST00000586119 SOX9P48436 509 aa12.68□□□□□ -0.38
LIG3-207ENST00000586119 ATXN1P54253 815 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms