RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 KLHL40Q2TBA0 621 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 NAALADL2Q58DX5 795 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 TRIM67Q6ZTA4 783 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 OTOP3Q7RTS5 596 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 CPLX4Q7Z7G2 160 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 IFT20Q8IY31 132 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 LRRC43Q8N309 656 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 FAM71BQ8TC56 605 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 ENOX1Q8TC92 643 aaKnown RBP3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 SAAL1Q96ER3 474 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 PPP1R16AQ96I34 528 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 PPP1R2P1Q96PQ5 205 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 CORO1BQ9BR76 489 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 TUBGCP2Q9BSJ2 902 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 TEX12Q9BXU0 123 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 NLNQ9BYT8 704 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 KLC2Q9H0B6 622 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 UNC45AQ9H3U1 944 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 OSGEPL1Q9H4B0 414 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 FBXO44Q9H4M3 255 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 WDR41Q9HAD4 459 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 C17orf75Q9HAS0 396 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 ZSWIM6Q9HCJ5 1215 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 POLMQ9NP87 494 aaPredicted RBP3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 KCNH7Q9NS40 1196 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 KLHL11Q9NVR0 708 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 KCND2Q9NZV8 630 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 WDR35Q9P2L0 1181 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 NDOR1Q9UHB4 597 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 VPS28Q9UK41 221 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 SLC39A10Q9ULF5 831 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 PCDHB11Q9Y5F2 797 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 NWD2Q9ULI1 1742 aa3.1□□□□□ -1.91
SMCHD1-203ENST00000577880 SF3B1O75533 1304 aaKnown RBP eCLIP3.09□□□□□ -1.912e-7■■■■■ 90.4
SMCHD1-203ENST00000577880 FAM205AQ6ZU69 1335 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 NRCAMQ92823 1304 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 PASKQ96RG2 1323 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 SLC12A8A0AV02 714 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 BTBD19C9JJ37 291 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 C1QTNF3-AMACRE9PGA6 284 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 TTI1O43156 1089 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 PSMD3O43242 534 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 AP1G2O75843 785 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 GFPT2O94808 682 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 RTN3O95197 1032 aaPredicted RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 SYF2O95926 243 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 NR3C1P04150 777 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 KRT7P08729 469 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 CLTBP09497 229 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 ZNF286BP0CG31 522 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 IL1R1P14778 569 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 EPB42P16452 691 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 POLR2EP19388 210 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 RASA1P20936 1047 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 ACO1P21399 889 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 EEF1GP26641 437 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 HTR1BP28222 390 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 GNA15P30679 374 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 GRK3P35626 688 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 CASP2P42575 452 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 MNAT1P51948 309 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 BCAR1P56945 870 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 FOXO4P98177 505 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 NR5A1Q13285 461 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 TUBB2AQ13885 445 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 RCN2Q14257 317 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 ME3Q16798 604 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 CCDC144BQ3MJ40 725 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 TMEM164Q5U3C3 297 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 ANKRD20A3Q5VUR7 823 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 HEATR6Q6AI08 1181 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 FAM173BQ6P4H8 233 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 JAMLQ86YT9 394 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 IFNLR1Q8IU57 520 aaPredicted RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 CPA6Q8N4T0 437 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 KCTD17Q8N5Z5 321 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 FBXL13Q8NEE6 735 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 ZSCAN18Q8TBC5 510 aaPredicted RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 MCOLN3Q8TDD5 553 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 ATP8B4Q8TF62 1192 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 PIK3R5Q8WYR1 880 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 DTNBP1Q96EV8 351 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 OTUB1Q96FW1 271 aaPredicted RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 TUBB2BQ9BVA1 445 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 CINPQ9BW66 212 aaPredicted RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 UBXN6Q9BZV1 441 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 LNPEPQ9UIQ6 1025 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 NDRG2Q9UN36 371 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 NR2E1Q9Y466 385 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 AK9Q5TCS8 1911 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 ARHGAP42A6NI28 874 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 UNCXA6NJT0 531 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 UBXN8O00124 270 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 PSMD12O00232 456 aaPredicted RBP3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 VWA5AO00534 786 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 SEPT4O43236 478 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 TLR2O60603 784 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 ATG13O75143 517 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 PPP6R2O75170 966 aa3.09□□□□□ -1.91
SMCHD1-203ENST00000577880 H2AFYO75367 372 aaKnown RBP3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms