RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 ARHGEF37A1IGU5 675 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 CCL16O15467 120 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 HOXD11P31277 338 aaPredicted RBP18.96■□□□□ 0.63
SMG6-214ENST00000573827 ABCD1P33897 745 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 CASP5P51878 434 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 PPM1LQ5SGD2 360 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 SPATA1Q5VX52 437 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 CCDC73Q6ZRK6 1079 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 SV2BQ7L1I2 683 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 HVCN1Q96D96 273 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 KIF12Q96FN5 646 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 TSPAN18Q96SJ8 248 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 PIDD1Q9HB75 910 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 OLFML3Q9NRN5 406 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.96■□□□□ 0.63
SMG6-214ENST00000573827 TFIP11Q9UBB9 837 aaKnown RBP18.96■□□□□ 0.63
SMG6-214ENST00000573827 SEL1LQ9UBV2 794 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 PCDHB8Q9UN66 801 aa18.96■□□□□ 0.63
SMG6-214ENST00000573827 SPTLC2O15270 562 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 NARSO43776 548 aaKnown RBP18.95■□□□□ 0.62
SMG6-214ENST00000573827 PPP6R2O75170 966 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 OAZ2O95190 189 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 SEC24AO95486 1093 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 VNN2O95498 520 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 NFICP08651 508 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 AVPR2P30518 371 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 GBP2P32456 591 aaPredicted RBP18.95■□□□□ 0.62
SMG6-214ENST00000573827 MATR3P43243 847 aaKnown RBP eCLIP18.95■□□□□ 0.62
SMG6-214ENST00000573827 NHLH1Q02575 133 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 PPP2R3AQ06190 1150 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 TCF15Q12870 199 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 HTR4Q13639 388 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 PKP1Q13835 747 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 GET4Q7L5D6 327 aaPredicted RBP18.95■□□□□ 0.62
SMG6-214ENST00000573827 RPF1Q9H9Y2 349 aaKnown RBP18.95■□□□□ 0.62
SMG6-214ENST00000573827 HCFC1R1Q9NWW0 138 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 DNMT3BQ9UBC3 853 aaKnown RBP18.95■□□□□ 0.62
SMG6-214ENST00000573827 NUB1Q9Y5A7 615 aa18.95■□□□□ 0.62
SMG6-214ENST00000573827 NRG2O14511 850 aaPredicted RBP18.94■□□□□ 0.62
SMG6-214ENST00000573827 SPTLC1O15269 473 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 YEATS4O95619 227 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 ATF2P15336 505 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 NPR3P17342 541 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 GAP43P17677 238 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 FSHRP23945 695 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 MCM4P33991 863 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 TXLNAP40222 546 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 ACOT2P49753 483 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 WNT7BP56706 349 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 JADE1Q6IE81 842 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 SHC4Q6S5L8 630 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 SUGP1Q8IWZ8 645 aaKnown RBP18.94■□□□□ 0.62
SMG6-214ENST00000573827 TCEAL8Q8IYN2 117 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 SLC44A3Q8N4M1 653 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 ZSWIM2Q8NEG5 633 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 BEST2Q8NFU1 509 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 ITFG1Q8TB96 612 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.94■□□□□ 0.62
SMG6-214ENST00000573827 SCN1AP35498 2009 aa18.94■□□□□ 0.62
SMG6-214ENST00000573827 ANO9A1A5B4 782 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 H7C4K7 107 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 PIRO00625 290 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 ZSCAN22P10073 491 aaPredicted RBP18.93■□□□□ 0.62
SMG6-214ENST00000573827 STAT6P42226 847 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 POU5F1Q01860 360 aaKnown RBP18.93■□□□□ 0.62
SMG6-214ENST00000573827 STK38Q15208 465 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 L1TD1Q5T7N2 865 aaKnown RBP18.93■□□□□ 0.62
SMG6-214ENST00000573827 CWF19L1Q69YN2 538 aaKnown RBP18.93■□□□□ 0.62
SMG6-214ENST00000573827 ADALQ6DHV7 355 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 CD302Q8IX05 232 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 PDILTQ8N807 584 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 TMEM105Q8N8V8 129 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 APPL2Q8NEU8 664 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 FGF13Q92913 245 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 NXPE3Q969Y0 559 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 RPP25Q9BUL9 199 aaKnown RBP18.93■□□□□ 0.62
SMG6-214ENST00000573827 AVENQ9NQS1 362 aaPredicted RBP18.93■□□□□ 0.62
SMG6-214ENST00000573827 KBTBD4Q9NVX7 518 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 TBC1D7Q9P0N9 293 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 AGO2Q9UKV8 859 aaKnown RBP18.93■□□□□ 0.62
SMG6-214ENST00000573827 CDH7Q9ULB5 785 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 DERAQ9Y315 318 aa18.93■□□□□ 0.62
SMG6-214ENST00000573827 XYLBO75191 536 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 LILRA4P59901 499 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 SLC5A9Q2M3M2 681 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 CTXN3Q4LDR2 81 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 C9orf57Q5W0N0 161 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 TPGS2Q68CL5 300 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 SLFN12LQ6IEE8 588 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 HSCBQ8IWL3 235 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 EFCAB13Q8IY85 973 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 GLIS3Q8NEA6 775 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 FGF14Q92915 247 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 ZNF396Q96N95 335 aaPredicted RBP18.92■□□□□ 0.62
SMG6-214ENST00000573827 ASB7Q9H672 318 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 MRPL44Q9H9J2 332 aaKnown RBP18.92■□□□□ 0.62
SMG6-214ENST00000573827 KCNH3Q9ULD8 1083 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 C2CD2Q9Y426 696 aa18.92■□□□□ 0.62
SMG6-214ENST00000573827 TIMM13Q9Y5L4 95 aaPredicted RBP18.92■□□□□ 0.62
SMG6-214ENST00000573827 GTF3C3Q9Y5Q9 886 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms