RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 C22orf23Q9BZE7 217 aa19.97■□□□□ 0.79
CLK3-227ENST00000570296 XPNPEP1Q9NQW7 623 aa19.97■□□□□ 0.79
CLK3-227ENST00000570296 GTSE1Q9NYZ3 720 aa19.97■□□□□ 0.79
CLK3-227ENST00000570296 CELSR3Q9NYQ7 3312 aa19.97■□□□□ 0.79
CLK3-227ENST00000570296 THADAQ6YHU6 1953 aa19.96■□□□□ 0.79
CLK3-227ENST00000570296 CCDC196A0A1B0GTZ2 297 aa19.96■□□□□ 0.79
CLK3-227ENST00000570296 TDP2O95551 362 aa19.96■□□□□ 0.79
CLK3-227ENST00000570296 GJA1P17302 382 aa19.96■□□□□ 0.79
CLK3-227ENST00000570296 TTC8Q8TAM2 541 aa19.96■□□□□ 0.79
CLK3-227ENST00000570296 SHKBP1Q8TBC3 707 aa19.96■□□□□ 0.79
CLK3-227ENST00000570296 TMEM209Q96SK2 561 aa19.96■□□□□ 0.79
CLK3-227ENST00000570296 SNTG2Q9NY99 539 aa19.96■□□□□ 0.79
CLK3-227ENST00000570296 CEP72Q9P209 647 aa19.96■□□□□ 0.79
CLK3-227ENST00000570296 MAFFQ9ULX9 164 aa19.96■□□□□ 0.79
CLK3-227ENST00000570296 ASXL3Q9C0F0 2248 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 PRPF3O43395 683 aaKnown RBP19.95■□□□□ 0.78
CLK3-227ENST00000570296 RECQL4O94761 1208 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 RDXP35241 583 aaKnown RBP19.95■□□□□ 0.78
CLK3-227ENST00000570296 UAP1L1Q3KQV9 507 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 XKR9Q5GH70 373 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 CREB3L3Q68CJ9 461 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 MOXD1Q6UVY6 613 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 CD300LGQ6UXG3 332 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 ASAP3Q8TDY4 903 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 PRIMPOLQ96LW4 560 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 UROC1Q96N76 676 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 BBC3Q96PG8 261 aaPredicted RBP19.95■□□□□ 0.78
CLK3-227ENST00000570296 LXNQ9BS40 222 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 VAV3Q9UKW4 847 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 TRIP11Q15643 1979 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 KALRNO60229 2985 aa19.95■□□□□ 0.78
CLK3-227ENST00000570296 KLF18A0A0U1RQI7 1052 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 PRKCBP05771 671 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 ADD1P35611 737 aaKnown RBP19.94■□□□□ 0.78
CLK3-227ENST00000570296 PLCB2Q00722 1185 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 TWF1Q12792 350 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 PPP4R3CPQ6ZMV5 832 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 C11orf74Q86VG3 221 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 GLIS3Q8NEA6 775 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 ADAM32Q8TC27 787 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 CXCL16Q9H2A7 254 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 CACNA2D2Q9NY47 1150 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 OBP2AQ9NY56 170 aa19.94■□□□□ 0.78
CLK3-227ENST00000570296 DCLK1O15075 740 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 TBX3O15119 743 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 IGHDP01880 384 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 IGFBP6P24592 240 aaPredicted RBP19.93■□□□□ 0.78
CLK3-227ENST00000570296 ARL2P36404 184 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 CLCNKBP51801 687 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 ARPP19P56211 112 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 SIM1P81133 766 aaPredicted RBP19.93■□□□□ 0.78
CLK3-227ENST00000570296 EXOSC10Q01780 885 aaKnown RBP19.93■□□□□ 0.78
CLK3-227ENST00000570296 GRSF1Q12849 480 aaKnown RBP eCLIP19.93■□□□□ 0.78
CLK3-227ENST00000570296 PTPAQ15257 358 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 UPP1Q16831 310 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 TMEM196Q5HYL7 178 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 ARID3BQ8IVW6 561 aaPredicted RBP19.93■□□□□ 0.78
CLK3-227ENST00000570296 ZFYVE19Q96K21 471 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 MKNK1Q9BUB5 465 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 LSG1Q9H089 658 aaKnown RBP19.93■□□□□ 0.78
CLK3-227ENST00000570296 EBF1Q9UH73 591 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 PI4KAP42356 2102 aa19.93■□□□□ 0.78
CLK3-227ENST00000570296 H7C4K7 107 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 I3L4J1 428 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 DPYSL4O14531 572 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 SEC24BO95487 1268 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 BRCC3P46736 316 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 LMAN2Q12907 356 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 NECTIN1Q15223 517 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 ITPRIPL2Q3MIP1 535 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 PMS2CLQ68D20 193 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 LRRC3BQ96PB8 259 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 HHIPQ96QV1 700 aa19.92■□□□□ 0.78
CLK3-227ENST00000570296 SLKQ9H2G2 1235 aaPredicted RBP19.92■□□□□ 0.78
CLK3-227ENST00000570296 PRMT7Q9NVM4 692 aaPredicted RBP19.92■□□□□ 0.78
CLK3-227ENST00000570296 AFF4Q9UHB7 1163 aaKnown RBP19.92■□□□□ 0.78
CLK3-227ENST00000570296 SPAARA0A1B0GVQ0 90 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 UPK3BL1B0FP48 263 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 UPK3BL2E5RIL1 263 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 SYN3O14994 580 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 N4BP3O15049 544 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 GLRA2P23416 452 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 GBP1P32455 592 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 FSTL4Q6MZW2 842 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 CYP2U1Q7Z449 544 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 C3orf58Q8NDZ4 430 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 FAM20AQ96MK3 541 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 PPP1R10Q96QC0 940 aaKnown RBP19.91■□□□□ 0.78
CLK3-227ENST00000570296 PDZD7Q9H5P4 517 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 ZSWIM4Q9H7M6 989 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 DDX25Q9UHL0 483 aaKnown RBP19.91■□□□□ 0.78
CLK3-227ENST00000570296 EVLQ9UI08 416 aaPredicted RBP19.91■□□□□ 0.78
CLK3-227ENST00000570296 FBXL5Q9UKA1 691 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 TPCN1Q9ULQ1 816 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 TENM4Q6N022 2769 aa19.91■□□□□ 0.78
CLK3-227ENST00000570296 A0A1W2PRU2 124 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 PATE3B3GLJ2 98 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 MEFVO15553 781 aaPredicted RBP19.9■□□□□ 0.78
CLK3-227ENST00000570296 DGAT1O75907 488 aa19.9■□□□□ 0.78
CLK3-227ENST00000570296 APBB3O95704 486 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms