RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 PPP1R18Q6NYC8 613 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 SLC23A3Q6PIS1 610 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 SYT13Q7L8C5 426 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 TCEAL8Q8IYN2 117 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 ELMOD1Q8N336 334 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 DAGLBQ8NCG7 672 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 PRPF31Q8WWY3 499 aaKnown RBP12.47□□□□□ -0.41
CDH3-208ENST00000569036 CHFRQ96EP1 664 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 DDX27Q96GQ7 796 aaKnown RBP12.47□□□□□ -0.41
CDH3-208ENST00000569036 GTPBP2Q9BX10 602 aaKnown RBP12.47□□□□□ -0.41
CDH3-208ENST00000569036 TRIM6Q9C030 488 aaPredicted RBP12.47□□□□□ -0.41
CDH3-208ENST00000569036 GPR88Q9GZN0 384 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 CYP4F11Q9HBI6 524 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 ASAH2Q9NR71 780 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 TMEM74BQ9NUR3 256 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 CEP72Q9P209 647 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 TSC2P49815 1807 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 ANKRD17O75179 2603 aaKnown RBP12.46□□□□□ -0.41
CDH3-208ENST00000569036 ATXN2Q99700 1313 aaKnown RBP12.46□□□□□ -0.41
CDH3-208ENST00000569036 CAPN8A6NHC0 703 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 PRKCBP05771 671 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 ATF2P15336 505 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 IGFBP6P24592 240 aaPredicted RBP12.46□□□□□ -0.41
CDH3-208ENST00000569036 TKTP29401 623 aaKnown RBP12.46□□□□□ -0.41
CDH3-208ENST00000569036 SFNP31947 248 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 JAK3P52333 1124 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 ATXN3P54252 364 aaPredicted RBP12.46□□□□□ -0.41
CDH3-208ENST00000569036 LAMTOR4Q0VGL1 99 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 PLA2G4FQ68DD2 849 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 SLC8B1Q6J4K2 584 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 ANKS3Q6ZW76 656 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 RALYLQ86SE5 291 aaKnown RBP12.46□□□□□ -0.41
CDH3-208ENST00000569036 SYT12Q8IV01 421 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 ARID3BQ8IVW6 561 aaPredicted RBP12.46□□□□□ -0.41
CDH3-208ENST00000569036 LEMD2Q8NC56 503 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 RPLP0P6Q8NHW5 317 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 LENG9Q96B70 501 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 ZNF512Q96ME7 567 aaPredicted RBP12.46□□□□□ -0.41
CDH3-208ENST00000569036 DCBLD2Q96PD2 775 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 JPH2Q9BR39 696 aaPredicted RBP12.46□□□□□ -0.41
CDH3-208ENST00000569036 UNC45AQ9H3U1 944 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 PARP2Q9UGN5 583 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 TAF6LQ9Y6J9 622 aa12.46□□□□□ -0.41
CDH3-208ENST00000569036 SPTAN1Q13813 2472 aaKnown RBP12.45□□□□□ -0.42
CDH3-208ENST00000569036 DDX11L8A8MPP1 907 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 PTGESO14684 152 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 TRDMT1O14717 391 aaKnown RBP12.45□□□□□ -0.42
CDH3-208ENST00000569036 TNFRSF10BO14763 440 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 CFIP05156 583 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 CALM1P0DP23 149 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 CALM2P0DP24 149 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 CALM3P0DP25 149 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 PRKCSHP14314 528 aaPredicted RBP12.45□□□□□ -0.42
CDH3-208ENST00000569036 ITPKBP27987 946 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 PLCB2Q00722 1185 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 NAB2Q15742 525 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 STXBP5Q5T5C0 1151 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 JAKMIP3Q5VZ66 844 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 PCSK4Q6UW60 755 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 TOGARAM2Q6ZUX3 1019 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 TMTC3Q6ZXV5 915 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 ARMCX6Q7L4S7 300 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 MINDY1Q8N5J2 469 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 RNF149Q8NC42 400 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 OR2I1PQ8NGU4 316 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 PSPC1Q8WXF1 523 aaKnown RBP12.45□□□□□ -0.42
CDH3-208ENST00000569036 TMEM143Q96AN5 459 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 DIAPH3Q9NSV4 1193 aa12.45□□□□□ -0.42
CDH3-208ENST00000569036 COL5A1P20908 1838 aaPredicted RBP12.44□□□□□ -0.42
CDH3-208ENST00000569036 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.44□□□□□ -0.42
CDH3-208ENST00000569036 A0A1W2PRU2 124 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 SMCO2A6NFE2 343 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 DPYSL4O14531 572 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 SH3BP5O60239 455 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 NPTXRO95502 500 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 NTRK1P04629 796 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 CYP21A2P08686 494 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 PTGER3P43115 390 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 TWF1Q12792 350 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 NFKBIBQ15653 356 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 ANO5Q75V66 913 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 SLCO6A1Q86UG4 719 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 TSTD1Q8NFU3 115 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 NCOA7Q8NI08 942 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 ACDQ96AP0 544 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 FCRL3Q96P31 734 aaPredicted RBP12.44□□□□□ -0.42
CDH3-208ENST00000569036 FBRSL1Q9HCM7 1045 aaKnown RBP12.44□□□□□ -0.42
CDH3-208ENST00000569036 POLMQ9NP87 494 aaPredicted RBP12.44□□□□□ -0.42
CDH3-208ENST00000569036 OBP2AQ9NY56 170 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 APOBEC2Q9Y235 224 aaKnown RBP12.44□□□□□ -0.42
CDH3-208ENST00000569036 PCDHB9Q9Y5E1 797 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 PLXND1Q9Y4D7 1925 aa12.44□□□□□ -0.42
CDH3-208ENST00000569036 CNTNAP5Q8WYK1 1306 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 TRABD2BA6NFA1 517 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 TMEM189-UBE2V1I3L0A0 370 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 I3L4J1 428 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 MSH4O15457 936 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 GAS7O60861 476 aa12.43□□□□□ -0.42
CDH3-208ENST00000569036 PRAMEF12O95522 483 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms