RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 ATF2P15336 505 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 GNA15P30679 374 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 SFNP31947 248 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 SYCP2LQ5T4T6 812 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 C6orf118Q5T5N4 469 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 NIPA1Q7RTP0 329 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 CCDC197Q8NCU1 140 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 PGM2Q96G03 612 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 TCHPQ9BT92 498 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 ATP6V0A4Q9HBG4 840 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 ANAPC5Q9UJX4 755 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 COQ4Q9Y3A0 265 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 NUB1Q9Y5A7 615 aa14.35□□□□□ -0.11
CLK3-215ENST00000564353 TLR3O15455 904 aaKnown RBP14.34□□□□□ -0.11
CLK3-215ENST00000564353 ATP4AP20648 1035 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 CDR1P51861 262 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 DRG2P55039 364 aaKnown RBP14.34□□□□□ -0.11
CLK3-215ENST00000564353 DYNLT1P63172 113 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 EMC2Q15006 297 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 ATP6V0A1Q93050 837 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 DDX27Q96GQ7 796 aaKnown RBP14.34□□□□□ -0.11
CLK3-215ENST00000564353 PPP1R16BQ96T49 567 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 FHDC1Q9C0D6 1143 aaPredicted RBP14.34□□□□□ -0.11
CLK3-215ENST00000564353 CNOT10Q9H9A5 744 aaKnown RBP14.34□□□□□ -0.11
CLK3-215ENST00000564353 A1CFQ9NQ94 594 aaKnown RBP14.34□□□□□ -0.11
CLK3-215ENST00000564353 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.34□□□□□ -0.11
CLK3-215ENST00000564353 ZNF646O15015 1829 aaPredicted RBP14.34□□□□□ -0.11
CLK3-215ENST00000564353 SPAG7O75391 227 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 CST3P01034 146 aaPredicted RBP14.34□□□□□ -0.11
CLK3-215ENST00000564353 HSPA6P17066 643 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 STRN3Q13033 797 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 CNGA2Q16280 664 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 CYP4A22Q5TCH4 519 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 NUGGCQ68CJ6 796 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 TBC1D31Q96DN5 1066 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 MSTO1Q9BUK6 570 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 DCLK3Q9C098 648 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 ST6GALNAC4Q9H4F1 302 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 LRRC19Q9H756 370 aa14.34□□□□□ -0.11
CLK3-215ENST00000564353 FSCN2O14926 492 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 IFNB1P01574 187 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 PSAPP07602 524 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 GJB1P08034 283 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 SLMAPQ14BN4 828 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 FASTKD3Q14CZ7 662 aaKnown RBP14.33□□□□□ -0.11
CLK3-215ENST00000564353 CYP1B1Q16678 543 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 CRELD2Q6UXH1 353 aaPredicted RBP14.33□□□□□ -0.11
CLK3-215ENST00000564353 ZNF365Q70YC5 407 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 TBC1D1Q86TI0 1168 aaPredicted RBP14.33□□□□□ -0.11
CLK3-215ENST00000564353 AGBL3Q8NEM8 1001 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 TCP11Q8WWU5 503 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 R3HDMLQ9H3Y0 253 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 KIF9Q9HAQ2 790 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 PARP2Q9UGN5 583 aa14.33□□□□□ -0.11
CLK3-215ENST00000564353 K7ERI5 159 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 CSDE1O75534 798 aaKnown RBP14.33□□□□□ -0.12
CLK3-215ENST00000564353 MTA2O94776 668 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 PAEPP09466 180 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 WEE2P0C1S8 567 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 IVDP26440 423 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 GMPSP49915 693 aaPredicted RBP14.33□□□□□ -0.12
CLK3-215ENST00000564353 SMTNL2Q2TAL5 461 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 FAM47EQ6ZV65 393 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 PNMA8AQ86V59 439 aaPredicted RBP14.33□□□□□ -0.12
CLK3-215ENST00000564353 SPATS2Q86XZ4 545 aaKnown RBP14.33□□□□□ -0.12
CLK3-215ENST00000564353 RBBP8NLQ8NC74 664 aaPredicted RBP14.33□□□□□ -0.12
CLK3-215ENST00000564353 DEPTORQ8TB45 409 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 CCT6BQ92526 530 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 SNF8Q96H20 258 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 FBXL18Q96ME1 805 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 SAMD15Q9P1V8 674 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 PCDHB2Q9Y5E7 798 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 F8VP50 259 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 DGAT1O75907 488 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 AGTP01019 485 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 SRGAP2CP0DJJ0 459 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 HIRAP54198 1017 aaPredicted RBP14.33□□□□□ -0.12
CLK3-215ENST00000564353 BACE1P56817 501 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 MAMLD1Q13495 774 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 P3H1Q32P28 736 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 IZUMO3Q5VZ72 239 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 HIBCHQ6NVY1 386 aaPredicted RBP14.33□□□□□ -0.12
CLK3-215ENST00000564353 TRIM50Q86XT4 487 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 KIF2BQ8N4N8 673 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 NSUN6Q8TEA1 469 aaKnown RBP14.33□□□□□ -0.12
CLK3-215ENST00000564353 NINJ2Q9NZG7 142 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 TJP2Q9UDY2 1190 aa14.33□□□□□ -0.12
CLK3-215ENST00000564353 DNAH12Q6ZR08 3092 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 COL2A1P02458 1487 aaPredicted RBP14.32□□□□□ -0.12
CLK3-215ENST00000564353 POC1B-GALNT4F8VUJ3 575 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 CLTAP09496 248 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 FDX1P10109 184 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 BRAFP15056 766 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 GLRA2P23416 452 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 NOP14P78316 857 aaKnown RBP14.32□□□□□ -0.12
CLK3-215ENST00000564353 PLCB3Q01970 1234 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 BIRC2Q13490 618 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 TMED2Q15363 201 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 KCNT1Q5JUK3 1230 aa14.32□□□□□ -0.12
CLK3-215ENST00000564353 CYB5D1Q6P9G0 228 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms