RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TLR9Q9NR96 1032 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 CHST12Q9NRB3 414 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 TBK1Q9UHD2 729 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 PGAP2Q9UHJ9 254 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 LRRFIP2Q9Y608 721 aaKnown RBP5.73□□□□□ -1.49
VPS35-205ENST00000563984 NUMBLQ9Y6R0 609 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 SCRIBQ14160 1630 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 BRD4O60885 1362 aaPredicted RBP5.72□□□□□ -1.49
VPS35-205ENST00000563984 NPIPB8E9PQR5 432 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 MTSS1O43312 755 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 GYS1P13807 737 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 BPIP17213 487 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 ACRV1P26436 265 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 SMARCA1P28370 1054 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 GSCP56915 257 aaPredicted RBP5.72□□□□□ -1.49
VPS35-205ENST00000563984 UBXN2AP68543 259 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 DGCR2P98153 550 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 NSUN2Q08J23 767 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS35-205ENST00000563984 ACAP1Q15027 740 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 CCDC152Q4G0S7 254 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 PREPLQ4J6C6 727 aaPredicted RBP5.72□□□□□ -1.49
VPS35-205ENST00000563984 ATP13A4Q4VNC1 1196 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 USP39Q53GS9 565 aaKnown RBP5.72□□□□□ -1.49
VPS35-205ENST00000563984 ZBTB41Q5SVQ8 909 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 HYIQ5T013 277 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 BROXQ5VW32 411 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 ZNF449Q6P9G9 518 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 FAM111BQ6SJ93 734 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 CCBE1Q6UXH8 406 aaPredicted RBP5.72□□□□□ -1.49
VPS35-205ENST00000563984 ZNF771Q7L3S4 317 aaPredicted RBP5.72□□□□□ -1.49
VPS35-205ENST00000563984 MCM10Q7L590 875 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 RNF180Q86T96 592 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 RASSF3Q86WH2 238 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 ARL10Q8N8L6 244 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 FRAT1Q92837 279 aaPredicted RBP5.72□□□□□ -1.49
VPS35-205ENST00000563984 SLC5A5Q92911 643 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 EXTL1Q92935 676 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 TNPO1Q92973 898 aaKnown RBP5.72□□□□□ -1.49
VPS35-205ENST00000563984 NACC2Q96BF6 587 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 NEK1Q96PY6 1258 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 TCF25Q9BQ70 676 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 TCHPQ9BT92 498 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 NACA2Q9H009 215 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 TMX1Q9H3N1 280 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 DKK3Q9UBP4 350 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 RCAN3Q9UKA8 241 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 GTF3C4Q9UKN8 822 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 TPCN1Q9ULQ1 816 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 SMARCA2P51531 1590 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 RB1CC1Q8TDY2 1594 aa5.72□□□□□ -1.49
VPS35-205ENST00000563984 UBE2QL1A1L167 161 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 PRSS38A1L453 326 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 CAPN14A8MX76 684 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 NRP2O60462 931 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 GAAP10253 952 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 TNNT1P13805 278 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 XPAP23025 273 aaPredicted RBP5.71□□□□□ -1.5
VPS35-205ENST00000563984 GPSM2P81274 684 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 NUCB1Q02818 461 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 MRPL28Q13084 256 aaKnown RBP5.71□□□□□ -1.5
VPS35-205ENST00000563984 STK3Q13188 491 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 FOXE3Q13461 319 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 TTC31Q49AM3 519 aaPredicted RBP5.71□□□□□ -1.5
VPS35-205ENST00000563984 WDR45BQ5MNZ6 344 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 CCDC122Q5T0U0 273 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 CFAP58Q5T655 872 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 ISM2Q6H9L7 571 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 GAREM2Q75VX8 874 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 CXorf67Q86X51 503 aaPredicted RBP5.71□□□□□ -1.5
VPS35-205ENST00000563984 SPATS2Q86XZ4 545 aaKnown RBP5.71□□□□□ -1.5
VPS35-205ENST00000563984 MYLK4Q86YV6 388 aaPredicted RBP5.71□□□□□ -1.5
VPS35-205ENST00000563984 ERC1Q8IUD2 1116 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 C1orf210Q8IVY1 113 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 UNC5BQ8IZJ1 945 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 CMTM4Q8IZR5 234 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 FAM76AQ8TAV0 307 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 SKA1Q96BD8 255 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 PGBD4Q96DM1 585 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 UROC1Q96N76 676 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 SERINC2Q96SA4 455 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 TTC1Q99614 292 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 SH3GL3Q99963 347 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 SELENOOQ9BVL4 669 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 IFT22Q9H7X7 185 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 CAAP1Q9H8G2 361 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 SH3GLB2Q9NR46 395 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 GTF2A1LQ9UNN4 478 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 GIT1Q9Y2X7 761 aa5.71□□□□□ -1.5
VPS35-205ENST00000563984 NOC2LQ9Y3T9 749 aaKnown RBP5.71□□□□□ -1.5
VPS35-205ENST00000563984 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.7□□□□□ -1.5
VPS35-205ENST00000563984 PLSCR1O15162 318 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 KDM1AO60341 852 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 ULK1O75385 1050 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 ERLIN1O75477 346 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 BAIAP3O94812 1187 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 TSPY4P0CV99 314 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 TSPY10P0CW01 314 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 SRGNP10124 158 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 MYBL2P10244 700 aa5.7□□□□□ -1.5
VPS35-205ENST00000563984 ATF7P17544 494 aaPredicted RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms