RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 CEP57Q86XR8 500 aa11.03□□□□□ -0.64
USP3-207ENST00000558218 CEP120Q8N960 986 aa11.03□□□□□ -0.64
USP3-207ENST00000558218 RABGGTAQ92696 567 aa11.03□□□□□ -0.64
USP3-207ENST00000558218 PBXIP1Q96AQ6 731 aa11.03□□□□□ -0.64
USP3-207ENST00000558218 HVCN1Q96D96 273 aa11.03□□□□□ -0.64
USP3-207ENST00000558218 EPSTI1Q96J88 318 aa11.03□□□□□ -0.64
USP3-207ENST00000558218 ZBTB45Q96K62 511 aaPredicted RBP11.03□□□□□ -0.64
USP3-207ENST00000558218 B3GALT6Q96L58 329 aa11.03□□□□□ -0.64
USP3-207ENST00000558218 ZNF396Q96N95 335 aaPredicted RBP11.03□□□□□ -0.64
USP3-207ENST00000558218 ZMAT2Q96NC0 199 aaKnown RBP11.03□□□□□ -0.64
USP3-207ENST00000558218 OXCT2Q9BYC2 517 aaPredicted RBP11.03□□□□□ -0.64
USP3-207ENST00000558218 MTRRQ9UBK8 725 aa11.03□□□□□ -0.64
USP3-207ENST00000558218 LIMD1Q9UGP4 676 aa11.03□□□□□ -0.64
USP3-207ENST00000558218 A0A0B4J269 797 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 NPHP3-ACAD11A0A0J9YXS1 232 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 TTC26A0AVF1 554 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 H7C4K7 107 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 PODXLO00592 558 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 OGTO15294 1046 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 PPP6R2O75170 966 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 CFHP08603 1231 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 WEE2P0C1S8 567 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 GAP43P17677 238 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 MARCKSP29966 332 aaPredicted RBP11.02□□□□□ -0.65
USP3-207ENST00000558218 LRPAP1P30533 357 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 NASPP49321 788 aaPredicted RBP11.02□□□□□ -0.65
USP3-207ENST00000558218 DHX8Q14562 1220 aaKnown RBP11.02□□□□□ -0.65
USP3-207ENST00000558218 POSTNQ15063 836 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 LIN9Q5TKA1 542 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 ATL3Q6DD88 541 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 SLC8B1Q6J4K2 584 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 PRSS55Q6UWB4 352 aaPredicted RBP11.02□□□□□ -0.65
USP3-207ENST00000558218 ZNF720Q7Z2F6 126 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 ZNF461Q8TAF7 563 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 SMG7Q92540 1137 aaKnown RBP11.02□□□□□ -0.65
USP3-207ENST00000558218 ZNF707Q96C28 371 aaPredicted RBP11.02□□□□□ -0.65
USP3-207ENST00000558218 FAM122AQ96E09 287 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 ASIC4Q96FT7 647 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 BICD1Q96G01 975 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 FIZ1Q96SL8 496 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 LRRC27Q9C0I9 530 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 PIDD1Q9HB75 910 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 ANKFY1Q9P2R3 1169 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 EPS15L1Q9UBC2 864 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 FBXW11Q9UKB1 542 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 UBQLN1Q9UMX0 589 aaKnown RBP11.02□□□□□ -0.65
USP3-207ENST00000558218 STYXL1Q9Y6J8 313 aa11.02□□□□□ -0.65
USP3-207ENST00000558218 K7ENM7 598 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 HNRNPDLO14979 420 aaKnown RBP11.01□□□□□ -0.65
USP3-207ENST00000558218 XYLBO75191 536 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 SPATA31D3P0C874 917 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 RPL17P18621 184 aaKnown RBP11.01□□□□□ -0.65
USP3-207ENST00000558218 OR1D2P34982 312 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 MATR3P43243 847 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP3-207ENST00000558218 SOX4Q06945 474 aaPredicted RBP11.01□□□□□ -0.65
USP3-207ENST00000558218 TDGQ13569 410 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 ALCAMQ13740 583 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 MRPL58Q14197 206 aaKnown RBP11.01□□□□□ -0.65
USP3-207ENST00000558218 PPM1LQ5SGD2 360 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 SPATA31D4Q6ZUB0 917 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 USP49Q70CQ1 688 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 MAP4K3Q8IVH8 894 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 SUGP1Q8IWZ8 645 aaKnown RBP11.01□□□□□ -0.65
USP3-207ENST00000558218 FBXL6Q8N531 539 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 LINC00301Q8NCQ3 95 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 APPL2Q8NEU8 664 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 LRRC15Q8TF66 581 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 HASPINQ8TF76 798 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 SUSD3Q96L08 255 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 USP28Q96RU2 1077 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 ASB7Q9H672 318 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 RPF1Q9H9Y2 349 aaKnown RBP11.01□□□□□ -0.65
USP3-207ENST00000558218 CACNG4Q9UBN1 327 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 CDH22Q9UJ99 828 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 EXOC7Q9UPT5 735 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 DERAQ9Y315 318 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 NUB1Q9Y5A7 615 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 PLXNA3P51805 1871 aa11.01□□□□□ -0.65
USP3-207ENST00000558218 DENND4AQ7Z401 1863 aa11□□□□□ -0.65
USP3-207ENST00000558218 FAM189A1O60320 539 aa11□□□□□ -0.65
USP3-207ENST00000558218 TBC1D4O60343 1298 aa11□□□□□ -0.65
USP3-207ENST00000558218 RFPL2O75678 378 aa11□□□□□ -0.65
USP3-207ENST00000558218 ABLIM3O94929 683 aa11□□□□□ -0.65
USP3-207ENST00000558218 YEATS4O95619 227 aa11□□□□□ -0.65
USP3-207ENST00000558218 PPP2R3AQ06190 1150 aa11□□□□□ -0.65
USP3-207ENST00000558218 SPECC1Q5M775 1068 aa11□□□□□ -0.65
USP3-207ENST00000558218 AXDND1Q5T1B0 1012 aaPredicted RBP11□□□□□ -0.65
USP3-207ENST00000558218 TPGS2Q68CL5 300 aa11□□□□□ -0.65
USP3-207ENST00000558218 FAM173BQ6P4H8 233 aa11□□□□□ -0.65
USP3-207ENST00000558218 HSCBQ8IWL3 235 aa11□□□□□ -0.65
USP3-207ENST00000558218 RDH13Q8NBN7 331 aa11□□□□□ -0.65
USP3-207ENST00000558218 C3orf58Q8NDZ4 430 aa11□□□□□ -0.65
USP3-207ENST00000558218 STRA6Q9BX79 667 aa11□□□□□ -0.65
USP3-207ENST00000558218 HAPLN2Q9GZV7 340 aa11□□□□□ -0.65
USP3-207ENST00000558218 IRF2BPLQ9H1B7 796 aa11□□□□□ -0.65
USP3-207ENST00000558218 CUEDC2Q9H467 287 aa11□□□□□ -0.65
USP3-207ENST00000558218 ZHX3Q9H4I2 956 aa11□□□□□ -0.65
USP3-207ENST00000558218 KCNK12Q9HB15 430 aa11□□□□□ -0.65
USP3-207ENST00000558218 OLFML3Q9NRN5 406 aa11□□□□□ -0.65
USP3-207ENST00000558218 CPSF3Q9UKF6 684 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms