RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ZWINTO95229 277 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 T-ENOLP0DO92 83 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 RPL21P46778 160 aaKnown RBP11.56□□□□□ -0.56
USP3-206ENST00000558157 CDK7P50613 346 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 SLC18A1P54219 525 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 CDR2Q01850 454 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 USP17L24Q0WX57 530 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 PPIL2Q13356 520 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 MOGSQ13724 837 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 SLC45A4Q5BKX6 768 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 USP17L6PQ6QN14 398 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 WNK4Q96J92 1243 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 MAML3Q96JK9 1138 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 IQCGQ9H095 443 aaKnown RBP11.56□□□□□ -0.56
USP3-206ENST00000558157 ASCC2Q9H1I8 757 aaPredicted RBP11.56□□□□□ -0.56
USP3-206ENST00000558157 SYNCQ9H7C4 482 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 ZNF232Q9UNY5 417 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 PCDHA3Q9Y5H8 950 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 PFASO15067 1338 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 A0A0G2JLL6 359 aaPredicted RBP11.56□□□□□ -0.56
USP3-206ENST00000558157 BTBD19C9JJ37 291 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 ATP6V1G1O75348 118 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 LYNP07948 512 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 ALAS1P13196 640 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 FGFR4P22455 802 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 TMED1Q13445 227 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 TREML2Q5T2D2 321 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 GADL1Q6ZQY3 521 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 PRRT2Q7Z6L0 340 aaPredicted RBP11.56□□□□□ -0.56
USP3-206ENST00000558157 ZC3H3Q8IXZ2 948 aaKnown RBP11.56□□□□□ -0.56
USP3-206ENST00000558157 RNF168Q8IYW5 571 aaPredicted RBP11.56□□□□□ -0.56
USP3-206ENST00000558157 TBCKQ8TEA7 893 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 RFFLQ8WZ73 363 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 GLG1Q92896 1179 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 AGBL1Q96MI9 1066 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 NT5C3AQ9H0P0 336 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 SLC38A10Q9HBR0 1119 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 CCPG1Q9ULG6 757 aa11.56□□□□□ -0.56
USP3-206ENST00000558157 TRPM7Q96QT4 1865 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 A8MXQ7 604 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 MIF4GDA9UHW6 222 aaKnown RBP11.55□□□□□ -0.56
USP3-206ENST00000558157 MEIS2O14770 477 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 CCDC22O60826 627 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 CELF2O95319 508 aaKnown RBP11.55□□□□□ -0.56
USP3-206ENST00000558157 ICAM1P05362 532 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 PABPC4LP0CB38 370 aaKnown RBP11.55□□□□□ -0.56
USP3-206ENST00000558157 CTNNA2P26232 953 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 GJA5P36382 358 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 RCN1Q15293 331 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 KHDC1Q4VXA5 237 aaKnown RBP11.55□□□□□ -0.56
USP3-206ENST00000558157 PHLDB3Q6NSJ2 640 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 PPP4R3CPQ6ZMV5 832 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 CATSPERGQ6ZRH7 1159 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 ANKRD35Q8N283 1001 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 ANKRD42Q8N9B4 389 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 LARP4BQ92615 738 aaKnown RBP11.55□□□□□ -0.56
USP3-206ENST00000558157 GLT8D2Q9H1C3 349 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 EPB41L1Q9H4G0 881 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 OCEL1Q9H607 264 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 GBA2Q9HCG7 927 aaPredicted RBP11.55□□□□□ -0.56
USP3-206ENST00000558157 RAVER2Q9HCJ3 691 aaKnown RBP11.55□□□□□ -0.56
USP3-206ENST00000558157 KCNH4Q9UQ05 1017 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 WDR37Q9Y2I8 494 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 NR2E1Q9Y466 385 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 A0A0G2JMZ2 1700 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 SMIM31A0A1B0GVY4 71 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 MYMKA6NI61 221 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 DDX3XO00571 662 aaKnown RBP eCLIP11.55□□□□□ -0.566e-9■■■■□ 22.1
USP3-206ENST00000558157 ATP9BO43861 1147 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 PFDN1O60925 122 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 TMEM253P0C7T8 217 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 DSG3P32926 999 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 SULT2A1Q06520 285 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 TMEM259Q4ZIN3 620 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 CPXCR1Q8N123 301 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 RIBC1Q8N443 379 aaPredicted RBP11.55□□□□□ -0.56
USP3-206ENST00000558157 GDAP1Q8TB36 358 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 HPS3Q969F9 1004 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 UBN1Q9NPG3 1134 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 DNAJB4Q9UDY4 337 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 UMODL1Q5DID0 1318 aa11.55□□□□□ -0.56
USP3-206ENST00000558157 VWA5AO00534 786 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 CXCL11O14625 94 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 CAPN9O14815 690 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 ZBED4O75132 1171 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 PSMG1O95456 288 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 ASLP04424 464 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 MUTP22033 750 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 YY1P25490 414 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 RPL13P26373 211 aaKnown RBP11.54□□□□□ -0.56
USP3-206ENST00000558157 NR1H3Q13133 447 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 ITGA9Q13797 1035 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 CYP1B1Q16678 543 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 LETM2Q2VYF4 491 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 Q4G0T1 1027 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 DCAF12L1Q5VU92 463 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 KLC3Q6P597 504 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 MARK2Q7KZI7 788 aaKnown RBP11.54□□□□□ -0.56
USP3-206ENST00000558157 NEK8Q86SG6 692 aa11.54□□□□□ -0.56
USP3-206ENST00000558157 ST13P4Q8IZP2 240 aaPredicted RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms