RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 MAPK10P53779 464 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 SCAND1P57086 179 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 RPS7P62081 194 aaKnown RBP3.75□□□□□ -1.81
VPS13C-205ENST00000558088 NOMO3P69849 1222 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 FPGSQ05932 587 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 ZNF844Q08AG5 666 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 FAPQ12884 760 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 STRN3Q13033 797 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 NOMO2Q5JPE7 1267 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 TOR2AQ5JU69 321 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 KIAA0895LQ68EN5 471 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 VWA1Q6PCB0 445 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 KIAA0907Q7Z7F0 614 aaPredicted RBP3.75□□□□□ -1.81
VPS13C-205ENST00000558088 TFAP2BQ92481 460 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 PGBD1Q96JS3 809 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 MYOCQ99972 504 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 HSFX1Q9UBD0 423 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 DNM3Q9UQ16 869 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 A0A087X0B3 334 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 PRAMEF33A0A0G2JMD5 474 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 A0A1W2PS29 197 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 CGB1A6NKQ9 187 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 GCOM1H8Y6P7 765 aaPredicted RBP3.74□□□□□ -1.81
VPS13C-205ENST00000558088 WNT10BO00744 389 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 BRINP1O60477 761 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 PRAMEF10O60809 474 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 FCER1AP12319 257 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 DDCP20711 480 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 PCSK1P29120 753 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 ID4P47928 161 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 PPP3CAQ08209 521 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 SLC10A2Q12908 348 aaPredicted RBP3.74□□□□□ -1.81
VPS13C-205ENST00000558088 FCRLBQ6BAA4 426 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 AMIGO2Q86SJ2 522 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.74□□□□□ -1.81
VPS13C-205ENST00000558088 LMBR1Q8WVP7 490 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 DDB2Q92466 427 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 C7orf25Q9BPX7 421 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 C11orf54Q9H0W9 315 aaPredicted RBP3.74□□□□□ -1.81
VPS13C-205ENST00000558088 DNAJC28Q9NX36 388 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 CDYLQ9Y232 598 aa3.74□□□□□ -1.81
VPS13C-205ENST00000558088 MRPL42Q9Y6G3 142 aaKnown RBP3.74□□□□□ -1.81
VPS13C-205ENST00000558088 COL3A1P02461 1466 aaPredicted RBP3.73□□□□□ -1.81
VPS13C-205ENST00000558088 PROM1O43490 865 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 CELA2AP08217 269 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 KCNA2P16389 499 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 SOX5P35711 763 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 SRSF2Q01130 221 aaKnown RBP3.73□□□□□ -1.81
VPS13C-205ENST00000558088 SLFN5Q08AF3 891 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 MTM1Q13496 603 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 DACT2Q5SW24 774 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 SUMO4Q6EEV6 95 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 ZNF425Q6IV72 752 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 KCNK18Q7Z418 384 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 HAPLN3Q96S86 360 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 ORAI2Q96SN7 254 aa3.73□□□□□ -1.81
VPS13C-205ENST00000558088 MYBBP1AQ9BQG0 1328 aaKnown RBP3.72□□□□□ -1.81
VPS13C-205ENST00000558088 TOR1BO14657 336 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 BMP15O95972 392 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 CHRM2P08172 466 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 MTHFD1P11586 935 aaKnown RBP3.72□□□□□ -1.81
VPS13C-205ENST00000558088 CPEP16870 476 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 PTGER1P34995 402 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 KRTAP10-9P60411 292 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 ITIH3Q06033 890 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 PIGFQ07326 219 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 GRM1Q13255 1194 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 SEPT2Q15019 361 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 PTPRRQ15256 657 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 LLGL1Q15334 1064 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 CT47A1Q5JQC4 288 aaPredicted RBP3.72□□□□□ -1.81
VPS13C-205ENST00000558088 RSPH3Q86UC2 560 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 AOPEPQ8N6M6 819 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 Q8N9P0 234 aaPredicted RBP3.72□□□□□ -1.81
VPS13C-205ENST00000558088 PDPRQ8NCN5 879 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 B3GALNT2Q8NCR0 500 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 SLC30A5Q8TAD4 765 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 SNX19Q92543 992 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 SAP30BPQ9UHR5 308 aaKnown RBP3.72□□□□□ -1.81
VPS13C-205ENST00000558088 PADI4Q9UM07 663 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 PCDHGA2Q9Y5H1 932 aa3.72□□□□□ -1.81
VPS13C-205ENST00000558088 ZNF804BA4D1E1 1349 aa3.71□□□□□ -1.81
VPS13C-205ENST00000558088 LINC00473A8K010 186 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 URI1O94763 535 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-205ENST00000558088 TTLL1O95922 423 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 SLC6A9P48067 706 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 ANXA11P50995 505 aaKnown RBP3.71□□□□□ -1.82
VPS13C-205ENST00000558088 NXPH1P58417 271 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 MTX3Q5HYI7 312 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 RHOT1Q8IXI2 618 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 CMIPQ8IY22 773 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 Q8NA96 180 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 C9orf106Q8NAJ2 232 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.71□□□□□ -1.82
VPS13C-205ENST00000558088 LPIN2Q92539 896 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 DPF1Q92782 380 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 AHCYL2Q96HN2 611 aaKnown RBP3.71□□□□□ -1.82
VPS13C-205ENST00000558088 PACSIN1Q9BY11 444 aa3.71□□□□□ -1.82
VPS13C-205ENST00000558088 SLKQ9H2G2 1235 aaPredicted RBP3.71□□□□□ -1.82
VPS13C-205ENST00000558088 NRIP3Q9NQ35 241 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms