RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CAPZA3Q96KX2 299 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 MMS19Q96T76 1030 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 AMFRQ9UKV5 643 aa13.53□□□□□ -0.24
SHMT2-229ENST00000557348 A0A087WZ62 844 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 DYNC1LI2O43237 492 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-229ENST00000557348 CA12O43570 354 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 FTCDO95954 541 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 FTLP02792 175 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-229ENST00000557348 FMO1Q01740 532 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 EMC10Q5UCC4 262 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 ALS2CLQ60I27 953 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 NFRKBQ6P4R8 1299 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 SLC47A2Q86VL8 602 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 MICALL1Q8N3F8 863 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 SLC20A1Q8WUM9 679 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 NAP1L3Q99457 506 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-229ENST00000557348 FDXACB1Q9BRP7 624 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-229ENST00000557348 GCOM2Q9BZD3 368 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-229ENST00000557348 NIF3L1Q9GZT8 377 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 HPCAL4Q9UM19 191 aa13.52□□□□□ -0.25
SHMT2-229ENST00000557348 MBLAC1A4D2B0 266 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-229ENST00000557348 SRGAP2O75044 1071 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 SYF2O95926 243 aaKnown RBP13.51□□□□□ -0.25
SHMT2-229ENST00000557348 AKR1A1P14550 325 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 CHRNB2P17787 502 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 AXLP30530 894 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 ATICP31939 592 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 FCGRTP55899 365 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 NNTQ13423 1086 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 CLEC16AQ2KHT3 1053 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 ZBTB41Q5SVQ8 909 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 LMBRD2Q68DH5 695 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-229ENST00000557348 ACAD10Q6JQN1 1059 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 TAX1BP1Q86VP1 789 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 THNSL1Q8IYQ7 743 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 TTC39CQ8N584 583 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 SPATA4Q8NEY3 305 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 VCPIP1Q96JH7 1222 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 TSPAN18Q96SJ8 248 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 PI4K2AQ9BTU6 479 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 CTTNBP2NLQ9P2B4 639 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 PTPRJQ12913 1337 aa13.51□□□□□ -0.25
SHMT2-229ENST00000557348 IGHA2P01877 340 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 CYP1A2P05177 515 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 P4HA1P13674 534 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 ABCB4P21439 1286 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 TNFRSF8P28908 595 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 TNFSF9P41273 254 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 TNNC1P63316 161 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 SKOR1P84550 965 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 MFSD10Q14728 455 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 PPP2R5EQ16537 467 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 AMHR2Q16671 573 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 MARCH8Q5T0T0 291 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 MFSD14CQ5VZR4 134 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 KIAA0319LQ8IZA0 1049 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 C3orf20Q8ND61 904 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 OR5B17Q8NGF7 314 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 ACTRT1Q8TDG2 376 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 DDX1Q92499 740 aaKnown RBP13.5□□□□□ -0.25
SHMT2-229ENST00000557348 RPS6KC1Q96S38 1066 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 MTMR12Q9C0I1 747 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 THAP2Q9H0W7 228 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 EPC1Q9H2F5 836 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 PDZD7Q9H5P4 517 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 PLEKHA5Q9HAU0 1116 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 AVENQ9NQS1 362 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-229ENST00000557348 GJD2Q9UKL4 321 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 C2CD2Q9Y426 696 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 PCDHB4Q9Y5E5 795 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 A0A1B0GUA9 196 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 FAM155AB1AL88 458 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-229ENST00000557348 HAS3O00219 553 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 B4GALT5O43286 388 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 LSM8O95777 96 aaKnown RBP13.5□□□□□ -0.25
SHMT2-229ENST00000557348 MMEP08473 750 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 STAG3L1P0CL83 205 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 SMIM10L2AP0DMW4 78 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 SMIM10L2BP0DMW5 78 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 ACO1P21399 889 aaKnown RBP13.5□□□□□ -0.25
SHMT2-229ENST00000557348 TFAMQ00059 246 aaKnown RBP13.5□□□□□ -0.25
SHMT2-229ENST00000557348 ZNF699Q32M78 642 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 NT5DC3Q86UY8 548 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 NME8Q8N427 588 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 UBL4BQ8N7F7 174 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.5□□□□□ -0.25
SHMT2-229ENST00000557348 FAM212AQ96EL1 285 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 HES6Q96HZ4 224 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 CARD9Q9H257 536 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 MINDY3Q9H8M7 445 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 VRTNQ9H8Y1 702 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 SPC25Q9HBM1 224 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 TTC7AQ9ULT0 858 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-229ENST00000557348 STXBP5LQ9Y2K9 1186 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 DERAQ9Y315 318 aa13.5□□□□□ -0.25
SHMT2-229ENST00000557348 CEP350Q5VT06 3117 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 TTLL13PA6NNM8 815 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 CCDC188H7C350 402 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 KCNK3O14649 394 aa13.49□□□□□ -0.25
SHMT2-229ENST00000557348 ZNF185O15231 689 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms