RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 HNRNPDLO14979 420 aaKnown RBP13.51□□□□□ -0.25
SHMT2-214ENST00000554604 CBFA2T2O43439 604 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 TRAPPC3O43617 180 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 SPATA31D3P0C874 917 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 MYBP10242 640 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 RPL17P18621 184 aaKnown RBP13.51□□□□□ -0.25
SHMT2-214ENST00000554604 ABCD1P33897 745 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 STAT6P42226 847 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 AFMP43652 599 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 LIG4P49917 911 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 CLCNKBP51801 687 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 RTP2Q5QGT7 225 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 PDXDC1Q6P996 788 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 DCLRE1AQ6PJP8 1040 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 PRSS55Q6UWB4 352 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-214ENST00000554604 SPATA31D4Q6ZUB0 917 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 SNX27Q96L92 541 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 ZNF830Q96NB3 372 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-214ENST00000554604 GOLGA2P5Q9HBQ8 144 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 RMND1Q9NWS8 449 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 TBX20Q9UMR3 447 aa13.51□□□□□ -0.25
SHMT2-214ENST00000554604 CCDC195A0A1B0GUA6 201 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 TGM5O43548 720 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 ZNF131P52739 623 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 GSDMDP57764 484 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 FANCCQ00597 558 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 MCL1Q07820 350 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 PSMD5Q16401 504 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 UPP1Q16831 310 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 SEZ6Q53EL9 994 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 XKR4Q5GH76 650 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 ALKAL1Q6UXT8 129 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-214ENST00000554604 C15orf39Q6ZRI6 1047 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 CCDC149Q6ZUS6 474 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 SV2BQ7L1I2 683 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 DYMQ7RTS9 669 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 GPR149Q86SP6 731 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 TDRD5Q8NAT2 981 aaKnown RBP13.5□□□□□ -0.25
SHMT2-214ENST00000554604 KIAA1524Q8TCG1 905 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 PIK3R5Q8WYR1 880 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 EDAQ92838 391 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 DDX27Q96GQ7 796 aaKnown RBP13.5□□□□□ -0.25
SHMT2-214ENST00000554604 XPO4Q9C0E2 1151 aaKnown RBP13.5□□□□□ -0.25
SHMT2-214ENST00000554604 PLEKHA4Q9H4M7 779 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 IFNKQ9P0W0 207 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 HCN4Q9Y3Q4 1203 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 MUC6Q6W4X9 2439 aa13.5□□□□□ -0.25
SHMT2-214ENST00000554604 DOCK8Q8NF50 2099 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 C2CD4DB7Z1M9 353 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 TMEM189-UBE2V1I3L0A0 370 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 C1RP00736 705 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 CLTAP09496 248 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 KCNE1P15382 129 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 KYAT1Q16773 422 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 CMASQ8NFW8 434 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-214ENST00000554604 HDAC7Q8WUI4 952 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 ACSF2Q96CM8 615 aaPredicted RBP13.49□□□□□ -0.25
SHMT2-214ENST00000554604 ZMAT2Q96NC0 199 aaKnown RBP13.49□□□□□ -0.25
SHMT2-214ENST00000554604 PIDD1Q9HB75 910 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 SPTLC3Q9NUV7 552 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 CNTN3Q9P232 1028 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 RAPGEFL1Q9UHV5 662 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 USTQ9Y2C2 406 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 NUB1Q9Y5A7 615 aa13.49□□□□□ -0.25
SHMT2-214ENST00000554604 ANK1P16157 1881 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 PODXLO00592 558 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 RFPL2O75678 378 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 CXCL8P10145 99 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 ZNF18P17022 549 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 NMT1P30419 496 aaKnown RBP13.48□□□□□ -0.25
SHMT2-214ENST00000554604 RPL9P32969 192 aaKnown RBP13.48□□□□□ -0.25
SHMT2-214ENST00000554604 ZXDAP98168 799 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 SOX4Q06945 474 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-214ENST00000554604 CUL4BQ13620 913 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 KCNB1Q14721 858 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 PTPN21Q16825 1174 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 SLC10A6Q3KNW5 377 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 CYP26C1Q6V0L0 522 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 OTOP3Q7RTS5 596 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 PLCD3Q8N3E9 789 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 KREMEN2Q8NCW0 462 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 LNX1Q8TBB1 728 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-214ENST00000554604 SMG7Q92540 1137 aaKnown RBP13.48□□□□□ -0.25
SHMT2-214ENST00000554604 DDX12PQ92771 950 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 KCNN1Q92952 543 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 C18orf25Q96B23 403 aaPredicted RBP13.48□□□□□ -0.25
SHMT2-214ENST00000554604 CLSTN3Q9BQT9 956 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 PLEKHA5Q9HAU0 1116 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 KBTBD4Q9NVX7 518 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 FANCLQ9NW38 375 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 ZNF318Q5VUA4 2279 aa13.48□□□□□ -0.25
SHMT2-214ENST00000554604 PPP1R3GB7ZBB8 358 aa13.47□□□□□ -0.25
SHMT2-214ENST00000554604 I3L4J1 428 aa13.47□□□□□ -0.25
SHMT2-214ENST00000554604 OGTO15294 1046 aa13.47□□□□□ -0.25
SHMT2-214ENST00000554604 PIGRP01833 764 aa13.47□□□□□ -0.25
SHMT2-214ENST00000554604 RPN1P04843 607 aaKnown RBP13.47□□□□□ -0.25
SHMT2-214ENST00000554604 FGFR3P22607 806 aa13.47□□□□□ -0.25
SHMT2-214ENST00000554604 TKTP29401 623 aaKnown RBP13.47□□□□□ -0.25
SHMT2-214ENST00000554604 OR1D2P34982 312 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms